An integrative approach to characterize cryptic species in the Thoracostoma trachygaster Hope, 1967 complex (Nematoda: Leptosomatidae)

Nematode diversity may seriously be underestimated when taking into account cryptic speciation. Thoracostoma trachygaster is commonly found in kelp holdfasts along the California coastline and was recently shown to consist of at least two distinct molecular clades (I and II). Here, we provide detailed morphological analysis of both clades, based on measurements taken from video vouchers of respectively eight and 16 individuals from the previous study, as well as 80 newly collected specimens from four Californian beaches. The latter were vouchered, measured, and then subjected to molecular analyses of the mitochondrial cytochrome oxidase c subunit I (COI) gene, and the ribosomal D2D3 and internal transcribed spacer (ITS) regions. This integrative approach shows that the three molecular clades are phylogenetically and morphologically distinct species, but a combination of morphological characters is needed to distinguish them. Two new species, Thoracostoma fatimae sp. nov. and Thoracostoma igniferum sp. nov. , are identified and described. The spicule length of T. fatimae sp. nov. is significantly shorter than that of T. trachygaster. Thoracostoma igniferum sp. nov. can be distinguished by the irregular posterior edge of the cephalic capsule and the two internal subdorsal tropis‐like projections in the wall of the cephalic capsule, which are lacking in T. fatimae sp. nov. and T. trachygaster. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 18–35.     

Effects of winter conditions on Daphnia dynamics and genetic diversity in a dimictic temperate reservoir

1. Winter conditions shape plankton dynamics and community composition in temperate regions, but their effect on dynamics and genetic composition of cyclical parthenogens like Daphnia is largely unclear. 2. For 5 years, we studied the dynamics, hatching from resting eggs and genetic structure of a D. galeata × longispina hybrid complex in a dimictic, temperate reservoir. Our main hypothesis was that higher spring densities and an earlier population peak will be observed after warmer winters, with a lower genetic diversity because of a lower contribution of resting eggs to population growth. 3. The study period could clearly be categorised into cold‐winter years (n = 3) and warm‐winter years (n = 2). Daphnia densities at the end of spring overturn were ～10‐fold lower after cold winters than after warm ones, but no pattern emerged concerning the timing and the height of the population peak in early summer. 4. Hatching intensity from resting eggs was higher and contributed up to 8.5% to Daphnia abundance in a cold‐winter year compared to a negligible contribution in a warm‐winter year. Consistent with this finding, new multilocus genotypes (MLGs) adding to the overwintering stock after the end of spring overturn and presumably originating from resting eggs increased genetic diversity and attained high frequencies within the population only after a cold winter. New MLGs were recorded also after warm winters, but they never gained dominance and no shift in genetic diversity was observed. However, genetic diversity was not generally reduced after warm winters. 5. Our results confirm earlier findings that winter conditions have only a limited effect on the main growth phase and the peak of Daphnia during late spring and early summer. However, winter conditions determine the contribution of resting eggs to the population development, which may profoundly alter the genetic composition of the population compared to the previous season.     

Algal biochar: effects and applications

Algae represent a promising target for the generation of bioenergy through slow pyrolysis, leading to the production of biochar. This study reports experiments conducted on the production of freshwater and saltwater macroalgal biochar in pilot‐scale quantities, the physical and chemical characteristics of the biochars, and their impact on plant growth. The biochars are low in carbon (C) content, surface area and cation exchange capacity, while being high in ash and nutrients. Trace element analysis demonstrates that macroalgal biochar produced from unpolluted water does not contain toxic trace elements in excess of levels mandated for unrestricted use as a biosolids amendment to soils. Pot trials conducted using a C and nutrient‐poor soil, without and with additional fertilizer, demonstrate dramatic increases between 15 and 32 times, respectively, in plant growth rate for biochar treatments compared with the no biochar controls, with additional smaller increases when fertilizer was added. Pot trials conducted using a relatively fertile agricultural soil showed smaller but significant impacts of biochar amendment over the controls.     

Evaluating Dependence Among Mule Deer Siblings in Fetal and Neonatal Survival Analyses

Abstract: The assumption of independent sample units is potentially violated in survival analyses where siblings comprise a high proportion of the sample. Violation of the independence assumption causes sample data to be overdispersed relative to a binomial model, which leads to underestimates of sampling variances. A variance inflation factor, c, is therefore required to obtain appropriate estimates of variances. We evaluated overdispersion in fetal and neonatal mule deer (Odocoileus hemionus) datasets where more than half of the sample units were comprised of siblings. We developed a likelihood function for estimating fetal survival when the fates of some fetuses are unknown, and we used several variations of the binomial model to estimate neonatal survival. We compared theoretical variance estimates obtained from these analyses with empirical variance estimates obtained from data-bootstrap analyses to estimate the overdispersion parameter, c. Our estimates of c for fetal survival ranged from 0.678 to 1.118, which indicate little to no evidence of overdispersion. For neonatal survival, 3 different models indicated that ĉ ranged from 1.1 to 1.4 and averaged 1.24–1.26, providing evidence of limited overdispersion (i.e., limited sibling dependence). Our results indicate that fates of sibling mule deer fetuses and neonates may often be independent even though they have the same dam. Predation tends to act independently on sibling neonates because of dam-neonate behavioral adaptations. The effect of maternal characteristics on sibling fate dependence is less straightforward and may vary by circumstance. We recommend that future neonatal survival studies incorporate additional sampling intensity to accommodate modest overdispersion (i.e., ĉ = 1.25), which would facilitate a corresponding ĉ adjustment in a model selection analysis using quasi-likelihood without a reduction in power. Our computational approach could be used to evaluate sample unit dependence in other studies where fates of individually marked siblings are monitored.     

Waterfowl Nesting in Fall-Seeded and Spring-Seeded Cropland in Saskatchewan

Abstract: Waterfowl nesting in annual croplands has remained a little-known aspect of waterfowl nesting ecology because of the inability of many studies to systematically search this habitat through the nesting season. Where searches have been conducted, they are generally restricted to the period prior to seeding, and many nests found are destroyed by the seeding operation. Consequently, fall-seeded crops have been promoted as an alternative cropping practice that could increase nest survival of waterfowl nesting in croplands. During 1996–1999, we conducted 3–4 complete nest searches on 4,274 ha of cropland, including spring-seeded wheat and barley, winter wheat, and fall rye in southern Saskatchewan, Canada. Using suites of predictive models, we tested hypotheses regarding relative nest abundance and nest survival among crop types and tested the influence of several landscape-scale covariates on these metrics. Apparent nest densities were higher in fall-seeded crops (winter wheat: 0.39 nests/ha, fall rye: 0.25 nests/ha) than in spring-seeded crops (0.03 nests/ha), and nest density in spring-seeded croplands increased with percent cropland and percent wetland habitat in the surrounding landscape. Nest survival was higher in winter wheat (38%) than in either fall rye (18%) or spring-seeded crops (12%), and nest survival in spring-seeded crops increased with relative nest initiation date. Nest survival was unaffected by surrounding landscape characteristics but tended to be higher in years of average wetness. Based on our findings, winter wheat and fall rye have the potential to provide productive nesting habitat for ≥7 species of upland nesting ducks and fall-seeded crops are a conservation tool well suited to highly cropped landscapes.     

Flow-related patterns in abundance and composition of the fish fauna of a degraded Australian lowland river

1. A 7‐year study was conducted in three hydrologically distinct sections within the highly regulated, lowland Campaspe River to investigate the influence of hydrology on temporal and spatial patterns in fish composition, abundance and recruitment. One section had 6 months, one section 2 months and one section no months of increased flow due to storage releases. The fish fauna of the less regulated, nearby Broken River served as a reference to which that of the Campaspe River was compared for the last 3 years of the study to allow insight into the relative effects of hydrology, barriers to movement and other environmental characteristics. The study included one high‐flow year, a moderate‐flow year and five low‐flow years. 2. A total of 16 fish species – 10 native and six alien – were caught in the Campaspe River, although of the native species, only three are considered to have self‐sustaining populations. The remaining species are either itinerants or a result of stocking. Alien species comprised approximately 64% of the total biomass of all fish caught. 3. Overall composition of the fish fauna did not differ significantly by year, but did by section of river. Species richness and the abundance of most of the dominant species also differed significantly by river section, but there was little inter‐annual variation in the abundance of any species, except for European perch and for common carp; the latter showing an increase in abundance following a high‐flow event during the spring of 2000 as a result of recruitment. 4. Overall faunal composition was not influenced by hydrology. However, multiple regression indicated that species richness, abundance of the dominant species and abundance of young‐of‐year (YOY) of golden perch, European perch and common carp all were influenced significantly by hydrological variables. The nature of the relationships was dependent on river section and hydrological season (‘winter’ or ‘spring/summer’). Of note was the result that the total abundance of fish and that of YOY common carp were significantly positively related to the number of spells above the threshold for movement upstream through the lower two weirs in the Campaspe River. Only one significant relationship between hydrological and fish‐related variables was found for the upper river section, whereas seven and five were found for the lower and middle sections respectively. 5. Comparisons with fish collected in the Broken River over 3 years suggest that the fauna of the Broken River is in a more natural state than that of the Campaspe River. Since the two rivers do not differ substantially in water quality, and since both contain significant weirs, which act as barriers to movement of fish, flow regulation is most likely to be the major reason for the poor state of the fauna in the Campaspe River.     

Genetic homogeneity among breeding grounds and nursery areas of an exploited Lake Malawi cichlid fish

1. Nursery areas are commonly recognized as important habitats for the management and conservation of fish stocks. Here we report the use of nursery areas by an exploited offshore cichlid in Lake Malawi, Rhamphochromis longiceps .
2. Like all haplochromine cichlids that have been studied, the species is a maternal mouthbrooder that broods eggs for several weeks following spawning. We found evidence that during this brooding period females migrate from open water to release juveniles in three shallow peripheral waterbodies (Chia Lagoon, Unaka Lagoon, Lake Malombe). However, it was unclear whether there is geographical population structuring within the species, which could indicate stock differences in their use of these nursery habitats, or if the lake contains a genetically panmictic population that employs nursery habitats opportunistically.
3. To investigate spatial and temporal population structuring within the lake we genotyped populations at seven microsatellite DNA loci. Overall, we found no significant spatial structuring among juveniles from the peripheral lagoons or among breeding males within the main lake body. Moreover, we found no evidence of temporal structuring among males on the breeding grounds within Lake Malawi or females entering Chia lagoon. Together, these results suggest that Lake Malawi contains a genetically homogeneous population of R. longiceps .
4. At present we know little of the distribution of juvenile R. longiceps elsewhere in the Lake Malawi basin, but their absence from surveyed rocky and sandy littoral habitats makes it possible that the species is dependent upon a small number of nearshore nursery areas, including these lagoons. As such, conservation of lagoon habitats and monitoring of exploited fish stocks within them may be important for effective preservation of biodiversity within the catchment.     

Terrestrial detritus supports the food webs in lowland intermittent streams of south‐eastern Australia: a stable isotope study

• 1 Large amounts of terrestrial detritus enter many low‐order forested streams, and this organic material is often the major basal resource in the metazoan food webs of such systems. However, despite their apparently low biomass, algae are the dominant food of organisms in a number of aquatic communities which conventionally would have been presumed to be dependent on allochthonous detritus, particularly those in the tropics and also in lowland intermittent streams in arid Australia.
• 2 The dual stable isotope signatures (δ¹³C and δ¹⁵N) of potential primary food sources were compared with the isotopic signatures of common aquatic animals in lowland intermittent streams in south‐eastern Australia, in both spring and summer, to determine whether allochthonous detritus was an important nutritional resource in these systems. The isotopic signatures of the major potential allochthonous plant food sources (Eucalyptus, Phalaris and Juncus) overlapped, but were distinct from algae and the dominant macrophytes growing in the study reaches. The isotopic signatures of biofilm were more spatially and temporally variable than those of the other basal resources.
• 3 Despite allochthonous detritus having relatively high C : N ratios compared to other potential basal resources, results from isosource mixing model calculations demonstrated that this detritus, and the associated biofilm, were the major energy sources assimilated by macroinvertebrate primary consumers in both spring and summer. The importance of these energy sources was also reflected in animals higher in the food web, including predatory macroinvertebrates and fish. These resources were supplemented by autochthonous sources of higher nutritional value (i.e. filamentous algae and macrophytes, which had relatively low C : N ratios) when they became more prolific as the streams dried to disconnected pools in summer.
• 4 The results highlight the importance of allochthonous detritus (particularly from Eucalyptus) as a dependable energy source for benthic macroinvertebrates and fish in lowland intermittent streams of south‐eastern Australia. This contrasts with previous stable isotope studies conducted in lowland intermittent streams in arid Australia, which have reported that the fauna are primarily dependent on autochthonous algae.

     

Making the biodiversity monitoring system sustainable: Design issues for large‐scale monitoring systems

Abstract There is strong demand for information about the status of, and trends in, Australia's biodiversity. Almost inevitably, this demand for information has led to demand for a broad‐scale monitoring system. However, the decision to embark on a monitoring system should only be made once it has been established that a monitoring system is the optimal way to inform management. We stress the need to invest resources in assessing whether a monitoring system is necessary before committing resources to the design and implementation of the system. Current debate associated with the design of a biodiversity monitoring system has similarities to the debate within the range management profession in the early 1970s. The experience with range monitoring shows that large‐scale monitoring systems such as those being proposed will require considerable resources, recurrently expended into the distant future, but with only a limited ability to adapt to new demands. Those involved in any biodiversity monitoring system will need to understand the implications of investing in a long‐term monitoring programme. Monitoring sustainability will only be possible if the monitoring system is itself sustainable. We discuss a number of issues that need to be addressed before the system is at all sustainable. These attributes are a mix of biophysical, social and institutional attributes and highlight the view that monitoring systems of the type being suggested comprise an unusual mixture of attributes not found in typical scientific activity. The present paper is not a technical manual, but rather considers some of the design issues associated with designing and implementing large‐scale monitoring systems.