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91.
Lars Ola Nilsson Håkan Wallander Erland Bååth Ursula Falkengren-Grerup 《Biogeochemistry》2006,80(1):43-55
Anthropogenic N deposition may change soil conditions in forest ecosystems as demonstrated in many studies of coniferous forests,
whereas results from deciduous forests are relatively scarce. Therefore the influence of N deposition on several variables
was studied in situ in 45 oak-dominated deciduous forests along a N deposition gradient in southern Sweden, where the deposition ranged from
10 to 20 kg N ha−1 year−1. Locally estimated NO
−
3
deposition, as measured with ion-exchange resins (IER) on the soil surface, and grass N concentration (%) were positively
correlated with earlier modelled regional N deposition. Furthermore, the δ15N values of grass and uppermost soil layers were negatively correlated with earlier modelled N deposition. The data on soil
NO
−
3
, measured with IER in the soil, and grass N concentration suggest increased soil N availability as a result of N deposition.
The δ15N values of grass and uppermost soil layers indicate increased nitrification rates in high N deposition sites, but no large
downward movements of NO
−
3
in these soils. Only a few sites had NO
−
3
concentrations exceeding 1 mg N l−1 in soil solution at 50 cm depth, which showed that N deposition to these acid oak-dominated forests has not yet resulted
in extensive leaching of N. The δ15N enrichment factor was the variable best correlated with NO
−
3
concentrations at 50 cm and is thus a variable that potentially may be used to predict leaching of NO
−
3
from forest soils. 相似文献
92.
Olapade OA Depas MM Jensen ET McLellan SL 《Applied and environmental microbiology》2006,72(3):1932-1938
A high biomasses of Cladophora, a filamentous green alga, is found mainly during the summer along the shores of Lake Michigan. In this study, the abundance and persistence of the fecal indicator bacterium Escherichia coli and sulfate-reducing bacteria (SRB) on Cladophora mats collected at Lake Michigan beaches were evaluated using both culture-based and molecular analyses. Additionally, 16S rRNA gene cloning and sequencing were used to examine the bacterial community composition. Overall, E. coli was detected in all 63 samples obtained from 11 sites, and the average levels at most beaches ranged from 2,700 CFU/100 g (wet weight) of Cladophora to 7,500 CFU/100 g of Cladophora. However, three beaches were found to have site average E. coli densities of 12,800, 21,130, and 27,950 CFU/100 g of Cladophora. The E. coli levels in the lake water collected at the same time from these three sites were less than the recommended U.S. Environmental Protection Agency limit, 235 CFU/100 ml. E. coli also persisted on Cladophora mats in microcosms at room temperature for more than 7 days, and in some experiments it persisted for as long as 28 days. The SRB densities on Cladophora mats were relatively high, ranging from 4.4x10(6) cells/g (6.64 log CFU/g) to 5.73x10(6) cells/g (6.76 log CFU/g) and accounting for between 20% and 27% of the total bacterial counts. Partial sequences of the 16S rRNA gene clones revealed a phylogenetically diverse community, in which the Cytophaga-Flavobacterium-Bacteroides cluster and the low-G+C-content gram-positive bacteria were the dominant organisms, accounting for 40% and 12.8%, respectively, of the total clone library. These results further reveal the potential public health and ecological significance of Cladophora mats that are commonly found along the shoreline of Lake Michigan, especially with regard to the potential to harbor microorganisms associated with fecal pollution and odor-causing bacteria. 相似文献
93.
BOX elements modulate gene expression in Streptococcus pneumoniae: impact on the fine-tuning of competence development 下载免费PDF全文
Knutsen E Johnsborg O Quentin Y Claverys JP Håvarstein LS 《Journal of bacteriology》2006,188(23):8307-8312
More than 100 BOX elements are randomly distributed in intergenic regions of the pneumococcal genome. Here we demonstrate that these elements can affect expression of neighboring genes and present evidence that they are mobile. Together, our findings show that BOX elements enhance genetic diversity and genomic plasticity in Streptococcus pneumoniae. 相似文献
94.
Vasiliu D Razi N Zhang Y Jacobsen N Allin K Liu X Hoffmann J Bohorov O Blixt O 《Carbohydrate research》2006,341(10):1447-1457
Poly-N-acetyllactosamines (pLNs) are common terminal sugars of many N- and O-linked glycan structures present in glycoproteins and glycolipids. Utilizing various glycosyltransferases, we developed new and efficient chemoenzymatic methods for the synthesis of pLNs in gram-scale. Specifically, the use of sialyltransferases and fucosyltransferases enabled us to synthesize and purify 24 blood group and tumor-associated pLN derivatives with alpha-(2-->3)- and alpha-(2-->6)-linked sialic acid, as well as with alpha-(1-->2)- and alpha-(1-->3)-linked fucose. All synthesized derivatives were linked to a short 2-azidoethyl spacer for further modification. 相似文献
95.
96.
In this study, we continuously monitored, second-by-second, concentration changes of two different carbohydrates (maltose and panose) by using monoclonal antibodies in an optical immunosensor based on total internal reflection fluorescence. Earlier studies have demonstrated that these antibodies increase their intrinsic tryptophan fluorescence upon binding of carbohydrate antigens. Using the four immobilized monoclonal antibodies with low affinities (K(d)>10(-6)M), fast kinetics (k(off)>1s(-1)), and high reversibility gave opportunities for developing a continuous immunosensor without any need for regeneration. Since intrinsic fluorescence was used, no extrinsic labeling was necessary. Sensitivity was in the range of 1-5 microM for panose, and 10-15 microM for maltose and the loss of intensity was as low as 3.5% per hour during measurements. Calculations of DeltaH degrees and DeltaS degrees from the temperature dependence of K(d) indicated an enthalpic driven antigen-antibody binding event that is diminished upon antibody immobilization. We feel certain that weakly interacting antibodies can be used in future applications for continuous monitoring where there is a need to achieve instantaneous information on the concentration of an analyte. 相似文献
97.
98.
Background
Low-level processing and normalization of microarray data are most important steps in microarray analysis, which have profound impact on downstream analysis. Multiple methods have been suggested to date, but it is not clear which is the best. It is therefore important to further study the different normalization methods in detail and the nature of microarray data in general. 相似文献99.
Deciduous forests may respond differently from coniferous forests to the anthropogenic deposition of nitrogen (N). Since fungi,
especially ectomycorrhizal (EM) fungi, are known to be negatively affected by N deposition, the effects of N deposition on
the soil microbial community, total fungal biomass and mycelial growth of EM fungi were studied in oak-dominated deciduous
forests along a nitrogen deposition gradient in southern Sweden. In-growth mesh bags were used to estimate the production
of mycelia by EM fungi in 19 oak stands in the N deposition gradient, and the results were compared with nitrate leaching
data obtained previously. Soil samples from 154 oak forest sites were analysed regarding the content of phospholipid fatty
acids (PLFAs). Thirty PLFAs associated with microbes were analysed and the PLFA 18:2ω6,9 was used as an indicator to estimate
the total fungal biomass. Higher N deposition (20 kg N ha−1 y−1 compared with 10 kg N ha−1 y−1) tended to reduce EM mycelial growth. The total soil fungal biomass was not affected by N deposition or soil pH, while the
PLFA 16:1ω5, a biomarker for arbuscular mycorrhizal (AM) fungi, was negatively affected by N deposition, but also positively
correlated to soil pH. Other PLFAs positively affected by soil pH were, e.g., i14:0, a15:0, 16:1ω9, a17:0 and 18:1ω7, while
some were negatively affected by pH, such as i15:0, 16:1ω7t, 10Me17:0 and cy19:0. In addition, N deposition had an effect
on the PLFAs 16:1ω7c and 16:1ω9 (negatively) and cy19:0 (positively). The production of EM mycelia is probably more sensitive
to N deposition than total fungal biomass according to the fungal biomarker PLFA 18:2ω6,9. Low amounts of EM mycelia covaried
with increased nitrate leaching, suggesting that EM mycelia possibly play an important role in forest soil N retention at
increased N input. 相似文献
100.
Cló E Kracun SK Nudelman AS Jensen KJ Liljeqvist JÅ Olofsson S Bergström T Blixt O 《Journal of virology》2012,86(11):6268-6278
Viral envelope proteins mediate interactions with host cells, leading to internalization and intracellular propagation. Envelope proteins are glycosylated and are known to serve important functions in masking host immunity to viral glycoproteins. However, the viral infectious cycle in cells may also lead to aberrant glycosylation that may elicit immunity. Our knowledge of immunity to aberrant viral glycans and glycoproteins is limited, potentially due to technical limitations in identifying immunogenic glycans and glycopeptide epitopes. This work describes three different complementary methods for high-throughput screening and identification of potential immunodominant O-glycopeptide epitopes on viral envelope glycoproteins: (i) on-chip enzymatic glycosylation of scan peptides, (ii) chemical glycopeptide microarray synthesis, and (iii) a one-bead-one-compound random glycopeptide library. We used herpes simplex virus type 2 (HSV-2) as a model system and identified a simple O-glycopeptide pan-epitope, (501)PPA(GalNAc)TAPG(507), on the mature gG-2 glycoprotein that was broadly recognized by IgG antibodies in HSV-2-infected individuals but not in HSV-1-infected or noninfected individuals. Serum reactivity to the extended sialyl-T glycoform was tolerated, suggesting that self glycans can participate in immune responses. The methods presented provide new insight into viral immunity and new targets for immunodiagnostic and therapeutic measures. 相似文献