Computational Design of TrkB Peptide Inhibitors and Their Biological Effects on Ovarian Cancer Cell Lines

There are large numbers of different intracellular signaling pathways regulated by Tyrosine kinases (Trk) receptors. Trk receptors, especially TrkB, are also frequently overexpressed in a variety of human malignant tumors. In this study, we have computationally designed small peptide-based inhibitors of TrkB and investigated their effects on the proliferation and apoptosis of two ovarian cancer cell lines. Molecular docking of TrkB with its ligand and antagonist, BDNF and Cyclotraxin B respectively, was carried out using HADDOCK program. A peptide library was constructed based on the critical residues involved in the TrkB binding site. After docking and optimization, two selected peptides were purchased and their effects on the viability and apoptosis of the cells were evaluated by performing MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide) test and flow cytometry assay. Subsequently, the levels of expression and phosphorylation statues of TrkB and its two downstream genes including MAPK3 and eIF4E were assessed with western blot. We found that designed peptides effectively reduced TrkB, MAPK3 and eIF4E phosphorylation, reduced cell viability and induced apoptosis in the treated cells when compared to untreated cells. In conclusion, the BDNF/TrkB signaling is shown to be attenuated substantially in the presence of peptide inhibitors suggesting a strong inhibitory potential of the designed peptides for Trk family.     

The role of endogenous opioids in the protective effects of local sublethal hyperthermia against the progression of burn injury

The aim of the present study was to evaluate the role of endogenous opioids in local sublethal hyperthermia-induced protection against burn injury.Second-degree burn wounds were induced on the back of Balb/c mice. Progression of burn injury and expression of heat shock protein (HSP)-70 were evaluated after 24 h.Both inhibition of HSP synthesis and blocking opioid receptors before applying local sublethal hyperthermia decreased the protective effects of sublethal hyperthermia against the progression of burn injury. Blocking opioid receptors attenuated induction of HSP-70 by sublethal hyperthermia.     

Effect of Fiber Geometry on Pulsatile Pumping and Energy Expenditure

Myocardial fiber orientation is a topic that has recently received much attention in connection with cardiac pumping function. The twisting motion of the cardiac base to apex can be a direct result of this geometric orientation of these fibers. One important question that has not been addressed yet is whether there is any relationship between the contractile energy expenditure and the geometric orientation of myocardial fibers. In the present work, we study the effect of contractile fiber orientation on pumping function. We particularly compare the effect of fiber geometry on ejection fraction, and on the energy required for contraction in both cylindrical and half-ellipsoid shell models. The analytical models we used signify the importance of twisting motion in minimizing the energy required to generate certain ejection fraction. Indeed, we quantified that if the angle of contractile fibers is appropriate for the shape and the size of the pump, twisting scheme can tremendously reduce the energy requirement for pumping.     

Reproduction characteristics of a stunted population of rudd, <Emphasis Type="Italic">Scardinius erythrophthalmus</Emphasis> (Linnaeus, 1758) living in the Anzali Lagoon (the southwest Caspian Sea,Iran)

A total of 486 specimens of Scardinius erythrophthalmus caught in the Anzali lagoon, a large lagoon located in the southwest Caspian Sea (Iran), between March and June 2007 were examined. Age determination showed that the maximum ages observed were 4+ in males and 5+ in females. Isometric growth was identified from length-weight relationship in males, females and pooled data. There was no significant difference from parity in the overall sex ratio of 252 males to 234 females. The fish spawn from mid April to late May, with peak spawning in mid May with the highest average GSI value of 7.12 and 13.52 for males and females respectively. The absolute fecundity ranged between 1482–59620 eggs with the mean of 9287.87 eggs while relative fecundity ranged from 127.8 to 1737.6 eggs/g with the average of 709 eggs/g of body weight. Egg diameter ranged from 0.43 to 1.23 mm with a mean of 0.73 mm. The characteristics of rudd in the stunted population from the Anzali lagoon differ markedly from those of other localities of its range.     

Podophyllotoxin: Current approaches to its biotechnological production and future challenges

Many plant‐derived agents are being used to treat cancer, including taxol, vinblastine, vincristine, or camptothecin and podophyllotoxin derivatives, among others. Plant biotechnology can provide a new tool for the production of anticancer agents but in spite of considerable efforts to produce vinblastine and vincristine in cell cultures and knowledge of the biosynthetic pathway of Catharanthus roseus alkaloids, the biotechnological production of taxol has only been achieved at an industrial level by companies such as Phyton Biotech and Cytoclonal Pharmaceutics. Podophyllotoxin was isolated as the active antitumor agent from the roots of Podophyllum species and more recently from the genus Linum and others. Etoposide, teniposide, and etophos are semi‐synthetic derivatives of podophyllotoxin and are used in the treatment of cancer. Biotechnological approaches, including the use of cell cultures, biotransformation, or metabolic engineering techniques to manipulate the biosynthetic pathway, represent an alternative for the production of podophyllotoxin and are discussed in this review.     

Novel rearranged abietane diterpenoids from the roots of Salvia sahendica

Two naphthoquinone diterpenoids, 1 and 2, one tricyclic, and one tetracyclic rearranged abietane ('4,5-seco-10,5-friedo-abietane') diterpenoids, 3 and 4, respectively, together with horminone (5) have been isolated from the roots of Salvia sahendica. Compounds 2 and 3 are new, and the 13C-NMR assignment for compound 4 was modified using ' Heteronuclear Multiple-Bond Correlation' (HMBC) spectroscopic data. The structures of the compounds have been established by using different spectral data including 1D- and 2D-NMR, IR, UV, and MS. The elemental composition for the major peaks of 3 and 4 were determined by ' High-Resolution Electron Impact Mass Spectrometry' (HR-EI-MS). The relative configurations of the new compounds were determined by 1H-NMR and 'Rotating-Frame NOES' (ROESY) spectroscopy. Compounds 1, 2, and 5 showed antifungal activities when tested on Blakeslea trispora. Lapachol, a prelynated naphthoquinone, was used as a positive control. The biological activities of the related naphthoquinones and abietane diterpenoids were discussed.     

Synchronization of two coupled pacemaker cells based on the phase response curve

In this paper, the synchronization of a pair of pacemaker cells as Sino-Atrial (SA) and Atrio-Ventricullar (AV) nodes have been studied and a new approach for synchronization, based on the concept of Phase Response Curve (PRC), has been proposed. The paper starts with presenting the necessary and sufficient conditions for synchronization in terms of the PRC parameters. Such conditions are time dependent and thus, the paper proceeds with deriving some sufficient conditions, which are not time dependent. The time-delay between the firing time of SA node and when it reaches the AV node is also considered. When the conditions for spontaneous synchronization are not valid, the synchronization is achieved by applying pulses to the AV or the SA nodes or to both of the nodes, depending on the accessibility. The subject has been investigated and sufficient conditions were achieved for all three cases. In each case, the dynamical equations of coupled pacemakers have been determined and the stability analyses of delay dynamical equations between discharges of two pacemakers were performed. The number of excitation pulses and the time intervals for applying them to accessible pacemaker(s) were obtained and eventually some numerical examples were simulated to approve the accuracy of the theoretical results and conditions.     

Essential oil composition and antimicrobial activity of Diplotaenia damavandica

Antimicrobial activity of the essential oils obtained from leaves, root and the seeds of Diplotaenia damavandica Mozaffarian, Hedge & Lamond, an endemic plant to Iran, was determined against 10 microorganisms using the disk susceptibility test as well as measuring minimum inhibitory concentrations. The results showed that all three oils had antibacterial activity against Bacillus subtilis, Staphylococcus aureus, Staphylococcus epidermidis and Escherichia coli. The essential oil from the leaves had the highest antimicrobial activity against all test microorganisms including the fungal strains. The essential oils compositions were analyzed and determined by GC and GC-MS. The oils analyses resulted in the identification of 16, 17 and 20 compounds representing 94.2%, 96.4% and 95.1% of the total oils, respectively. The main components of the leaf essential oils were (Z)-beta-ocimene (21.6%), alpha-phellandrene (21.3%) and terpinolene (20%). Dill apiol (30.1%) and gamma-terpinene (16.2%) were the main components of the root and seed essential oils, respectively.