The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins

SARS Coronavirus 2 (SARS-CoV-2) emerged in late 2019, leading to the Coronavirus Disease 2019 (COVID-19) pandemic that continues to cause significant global mortality in human populations. Given its sequence similarity to SARS-CoV, as well as related coronaviruses circulating in bats, SARS-CoV-2 is thought to have originated in Chiroptera species in China. However, whether the virus spread directly to humans or through an intermediate host is currently unclear, as is the potential for this virus to infect companion animals, livestock, and wildlife that could act as viral reservoirs. Using a combination of surrogate entry assays and live virus, we demonstrate that, in addition to human angiotensin-converting enzyme 2 (ACE2), the Spike glycoprotein of SARS-CoV-2 has a broad host tropism for mammalian ACE2 receptors, despite divergence in the amino acids at the Spike receptor binding site on these proteins. Of the 22 different hosts we investigated, ACE2 proteins from dog, cat, and cattle were the most permissive to SARS-CoV-2, while bat and bird ACE2 proteins were the least efficiently used receptors. The absence of a significant tropism for any of the 3 genetically distinct bat ACE2 proteins we examined indicates that SARS-CoV-2 receptor usage likely shifted during zoonotic transmission from bats into people, possibly in an intermediate reservoir. Comparison of SARS-CoV-2 receptor usage to the related coronaviruses SARS-CoV and RaTG13 identified distinct tropisms, with the 2 human viruses being more closely aligned. Finally, using bioinformatics, structural data, and targeted mutagenesis, we identified amino acid residues within the Spike–ACE2 interface, which may have played a pivotal role in the emergence of SARS-CoV-2 in humans. The apparently broad tropism of SARS-CoV-2 at the point of viral entry confirms the potential risk of infection to a wide range of companion animals, livestock, and wildlife.

A study using a combination of surrogate entry assays and live virus suggests that SARS-CoV-2 may have a broad host-range, revealing that the virus''s spike protein can use a broad range of host ACE2 receptors to enter cells and that the sequence of this protein might have changed during the zoonotic jump into humans.     

The nature of three ancient woodland soils in southern England

Abstract. Despite a wealth of published research on the nature of woodland soils, little is known about the nature of soils on sites that have supported woodland for many hundreds of years, namely ancient woodland. The properties and variability of soils in three ancient woods; one in the New Forest, Hampshire and two in Berkshire, were compared with those under recent woods. The acidity of ancient and recent woodland soils was high and remarkably similar. Only where cultivation of soils had preceded woodland establishment was soil acidity lower. The quantity of carbon in the soils studied was inversely related to soil acidity and the ancient woods had accumulated larger quantities of carbon than their recent counterparts. The quantities of Ca²⁺, Mg²⁺ and K⁺ were larger in the ancient woods except where prior cultivation had taken place. Total and organic phosphate contents of the ancient woodland soils were also consistently larger. The nature and pattern of soil variability in ancient woodland soils was quite distinct from that found in recent woods. Overall, the variability of soil acidity, carbon content and organic phosphate was larger in the ancient woodland soils but the pattern of variability differed between the soil properties. No clear association existed between the pattern of soil acidity and individual trees. At the surface of some of the woodland soils, however, carbon distribution appeared to be associated with individual trees. At depth in the ancient woodland soils, the association with the existing vegetation cover was not so clear. It is probable that the ancient woodland soils retained relict features of previous vegetation cover. Organic phosphate distribution was very strongly associated with the present vegetation cover. The pattern of distribution of organic phosphate appeared to be stronger than that of soil acidity and carbon content.