Pairwise Measures of Causal Direction in the Epidemiology of Sleep Problems and Depression

Depressive mood is often preceded by sleep problems, suggesting that they increase the risk of depression. Sleep problems can also reflect prodromal symptom of depression, thus temporal precedence alone is insufficient to confirm causality. The authors applied recently introduced statistical causal-discovery algorithms that can estimate causality from cross-sectional samples in order to infer the direction of causality between the two sets of symptoms from a novel perspective. Two common-population samples were used; one from the Young Finns study (690 men and 997 women, average age 37.7 years, range 30–45), and another from the Wisconsin Longitudinal study (3101 men and 3539 women, average age 53.1 years, range 52–55). These included three depression questionnaires (two in Young Finns data) and two sleep problem questionnaires. Three different causality estimates were constructed for each data set, tested in a benchmark data with a (practically) known causality, and tested for assumption violations using simulated data. Causality algorithms performed well in the benchmark data and simulations, and a prediction was drawn for future empirical studies to confirm: for minor depression/dysphoria, sleep problems cause significantly more dysphoria than dysphoria causes sleep problems. The situation may change as depression becomes more severe, or more severe levels of symptoms are evaluated; also, artefacts due to severe depression being less well presented in the population data than minor depression may intervene the estimation for depression scales that emphasize severe symptoms. The findings are consistent with other emerging epidemiological and biological evidence.     

Unexpected Role of the Steroid-Deficiency Protein Ecdysoneless in Pre-mRNA Splicing

The steroid hormone ecdysone coordinates insect growth and development, directing the major postembryonic transition of forms, metamorphosis. The steroid-deficient ecdysoneless¹ (ecd¹) strain of Drosophila melanogaster has long served to assess the impact of ecdysone on gene regulation, morphogenesis, or reproduction. However, ecd also exerts cell-autonomous effects independently of the hormone, and mammalian Ecd homologs have been implicated in cell cycle regulation and cancer. Why the Drosophila ecd¹ mutants lack ecdysone has not been resolved. Here, we show that in Drosophila cells, Ecd directly interacts with core components of the U5 snRNP spliceosomal complex, including the conserved Prp8 protein. In accord with a function in pre-mRNA splicing, Ecd and Prp8 are cell-autonomously required for survival of proliferating cells within the larval imaginal discs. In the steroidogenic prothoracic gland, loss of Ecd or Prp8 prevents splicing of a large intron from CYP307A2/spookier (spok) pre-mRNA, thus eliminating this essential ecdysone-biosynthetic enzyme and blocking the entry to metamorphosis. Human Ecd (hEcd) can substitute for its missing fly ortholog. When expressed in the Ecd-deficient prothoracic gland, hEcd re-establishes spok pre-mRNA splicing and protein expression, restoring ecdysone synthesis and normal development. Our work identifies Ecd as a novel pre-mRNA splicing factor whose function has been conserved in its human counterpart. Whether the role of mammalian Ecd in cancer involves pre-mRNA splicing remains to be discovered.     

Spatial Restriction of FGF Signaling by a Matrix Metalloprotease Controls Branching Morphogenesis

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Highlights? Drosophila Matrix Metalloprotease (Mmp) inhibits FGF signaling ? An FGF – MMP feedback loop regulates branching morphogenesis ? Mmp2 spatially regulates FGF signaling in epithelia     

An adaptive system identification model of the biomechanical response of the human trunk during sudden loading

Sudden loading injuries to the low back are a concern. Current models are limited in their ability to quantify the time-varying nature of the sudden loading event. The method of approach used six males who were subjected to sudden loads. Response data (EMG and kinematics) were input into a system identification model to yield time-varying torso stiffness estimates. The results show estimates of system stiffness in good agreement with values in the literature. The average root mean square error of the model's predictions of sagittal motion was equal to 0.1 deg. In conclusion, system identification can be implemented with minimal error and used to gain more insight into the time-dependent trunk response to sudden loads.     

Magnetic techniques for the isolation and purification of proteins and peptides

Isolation and separation of specific molecules is used in almost all areas of biosciences and biotechnology. Diverse procedures can be used to achieve this goal. Recently, increased attention has been paid to the development and application of magnetic separation techniques, which employ small magnetic particles. The purpose of this review paper is to summarize various methodologies, strategies and materials which can be used for the isolation and purification of target proteins and peptides with the help of magnetic field. An extensive list of realised purification procedures documents the efficiency of magnetic separation techniques.     

Spent Rooibos (Aspalathus linearis) Tea Biomass as an Adsorbent for Organic Dye Removal

Spent rooibos (Aspalathus linearis) tea biomass can be used as an inexpensive biosorbent for xenobiotic removal. Seventeen dyes have been tested for their affinity to spent rooibos tea biomass. Eight dyes were used to study the adsorption process in detail. The dye adsorption has been described with the Langmuir isotherm. The calculated maximum adsorption capacities reached the value of over 200 mg of dye per gram of dried rooibos biomass for Bismarck brown Y. Spent rooibos tea biomass was also magnetically modified by contact with microwave-synthesized magnetic iron oxide nano- and microparticles. This new type of magnetically responsive biocomposite material can be easily separated by means of strong permanent magnets. Both native and magnetically modified spent rooibos biomass have shown excellent adsorption capacities for various types of organic dyes, so they are highly promising adsorbents in environmental technologies for selected xenobiotic removal.     

The effect of a repetitive, fatiguing lifting task on horizontal ground reaction forces

There are many outdoor work environments that involve the combination of repetitive, fatiguing lifting tasks and less-than-optimal footing (muddy/slippery ground surfaces). The focus of the current research was to evaluate the effects of lifting-induced fatigue of the low back extensors on lifting kinematics and ground reaction forces. Ten participants performed a repetitive lifting task over a period of 8 minutes. As they performed this task, the ground reaction forces and whole body kinematics were captured using a force platform and magnetic motion tracking system, respectively. Fatigue was verified in this experiment by documenting a decrease in the median frequency of the bilateral erector spinae muscles (pretest-posttest). Results indicate significant (p < 0.05) increases in the magnitude of the peak anterior/posterior (increased by an average of 18.3%) and peak lateral shear forces (increased by an average of 24.3%) with increasing time into the lifting bout. These results have implications for work environments such as agriculture and construction, where poor footing conditions and requirements for considerable manual materials handling may interact to create an occupational scenario with an exceptionally high risk of a slip and fall.     

Elucidating the role of conserved glutamates in H+-pyrophosphatase of Rhodospirillum rubrum

H(+)-pyrophosphatase (H(+)-PPase) catalyzes pyrophosphate-driven proton transport against the electrochemical potential gradient in various biological membranes. All 50 of the known H(+)-PPase amino acid sequences contain four invariant glutamate residues. In this study, we use site-directed mutagenesis in conjunction with functional studies to determine the roles of the glutamate residues Glu(197), Glu(202), Glu(550), and Glu(649) in the H(+)-PPase of Rhodospirillum rubrum (R-PPase). All residues were replaced with Asp and Ala. The resulting eight variant R-PPases were expressed in Escherichia coli and isolated as inner membrane vesicles. All substitutions, except E202A, generated enzymes capable of PP(i) hydrolysis and PP(i)-energized proton translocation, indicating that the negative charge of Glu(202) is essential for R-PPase function. The hydrolytic activities of all other PPase variants were impaired at low Mg(2+) concentrations but were only slightly affected at high Mg(2+) concentrations, signifying that catalysis proceeds through a three-metal pathway in contrast to wild-type R-PPase, which employs both two- and three-metal pathways. Substitution of Glu(197), Glu(202), and Glu(649) resulted in decreased binding affinity for the substrate analogues aminomethylenediphosphonate and methylenediphosphonate, indicating that these residues are involved in substrate binding as ligands for bridging metal ions. Following the substitutions of Glu(550) and Glu(649), R-PPase was more susceptible to inactivation by the sulfhydryl reagent mersalyl, highlighting a role of these residues in maintaining enzyme tertiary structure. None of the substitutions affected the coupling of PP(i) hydrolysis to proton transport.