Phylogenetic Constraints Do Not Explain the Rarity of Nitrogen-Fixing Trees in Late-Successional Temperate Forests

Background

Symbiotic nitrogen (N)-fixing trees are rare in late-successional temperate forests, even though these forests are often N limited. Two hypotheses could explain this paradox. The ‘phylogenetic constraints hypothesis’ states that no late-successional tree taxa in temperate forests belong to clades that are predisposed to N fixation. Conversely, the ‘selective constraints hypothesis’ states that such taxa are present, but N-fixing symbioses would lower their fitness. Here we test the phylogenetic constraints hypothesis.

Methodology/Principal Findings

Using U.S. forest inventory data, we derived successional indices related to shade tolerance and stand age for N-fixing trees, non-fixing trees in the ‘potentially N-fixing clade’ (smallest angiosperm clade that includes all N fixers), and non-fixing trees outside this clade. We then used phylogenetically independent contrasts (PICs) to test for associations between these successional indices and N fixation. Four results stand out from our analysis of U.S. trees. First, N fixers are less shade-tolerant than non-fixers both inside and outside of the potentially N-fixing clade. Second, N fixers tend to occur in younger stands in a given geographical region than non-fixers both inside and outside of the potentially N-fixing clade. Third, the potentially N-fixing clade contains numerous late-successional non-fixers. Fourth, although the N fixation trait is evolutionarily conserved, the successional traits are relatively labile.

Conclusions/Significance

These results suggest that selective constraints, not phylogenetic constraints, explain the rarity of late-successional N-fixing trees in temperate forests. Because N-fixing trees could overcome N limitation to net primary production if they were abundant, this study helps to understand the maintenance of N limitation in temperate forests, and therefore the capacity of this biome to sequester carbon.     

Feedbacks between plant N demand and rhizosphere priming depend on type of mycorrhizal association

Ecosystem carbon (C) balance is hypothesised to be sensitive to the mycorrhizal strategies that plants use to acquire nutrients. To test this idea, we coupled an optimality‐based plant nitrogen (N) acquisition model with a microbe‐focused soil organic matter (SOM) model. The model accurately predicted rhizosphere processes and C–N dynamics across a gradient of stands varying in their relative abundance of arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) trees. When mycorrhizal dominance was switched – ECM trees dominating plots previously occupied by AM trees, and vice versa – legacy effects were apparent, with consequences for both C and N stocks in soil. Under elevated productivity, ECM trees enhanced decomposition more than AM trees via microbial priming of unprotected SOM. Collectively, our results show that ecosystem responses to global change may hinge on the balance between rhizosphere priming and SOM protection, and highlight the importance of dynamically linking plants and microbes in terrestrial biosphere models.     

Declining foliar and litter δ¹⁵N diverge from soil, epiphyte and input δ¹⁵N along a 120,000 yr temperate rainforest chronosequence

Patterns in the natural abundance of nitrogen (N) isotopes (1?N and 1?N) can help in the understanding of ecosystem processes along environmental gradients, because some processes fractionate against the heavier isotope. We measured δ1?N in many components of the Franz Josef soil chronosequence in New Zealand to see how each component varied along the sequence and within sites, and to see what this variation can tell us about how ecosystem processes such as N losses change with soil age. We analyzed δ1?N in foliage from 18 woody species, abscised leaves from seven woody species, three soil horizons, bryophytes, lichens, bulk deposition, and nodules from the N-fixing tree Coriaria arborea (Coriariaceae). Foliar δ1?N varied significantly across plant species. Foliage and bulk litter became 1?N-depleted as soil age increased. Soil N from organic and mineral horizons was significantly more 1?N-enriched than bulk litter N at each site. Increasing precipitation also decreased foliar and soil δ1?N. Comparing input and whole ecosystem δ1?N revealed limited evidence for net fractionation during N losses. These trends are consistent with some combination of increasing fractionation during plant N uptake, mycorrhizal transfer, within-plant processing, and soil decomposition as soils age.     

Isocitrate dehydrogenase 1 R132C mutation occurs exclusively in microsatellite stable colorectal cancers with the CpG island methylator phenotype

The CpG Island Methylator Phenotype (CIMP) is fundamental to an important subset of colorectal cancer; however, its cause is unknown. CIMP is associated with microsatellite instability but is also found in BRAF mutant microsatellite stable cancers that are associated with poor prognosis. The isocitrate dehydrogenase 1 (IDH1) gene causes CIMP in glioma due to an activating mutation that produces the 2-hydroxyglutarate oncometabolite. We therefore examined IDH1 alteration as a potential cause of CIMP in colorectal cancer. The IDH1 mutational hotspot was screened in 86 CIMP-positive and 80 CIMP-negative cancers. The entire coding sequence was examined in 81 CIMP-positive colorectal cancers. Forty-seven cancers varying by CIMP-status and IDH1 mutation status were examined using Illumina 450K DNA methylation microarrays. The R132C IDH1 mutation was detected in 4/166 cancers. All IDH1 mutations were in CIMP cancers that were BRAF mutant and microsatellite stable (4/45, 8.9%). Unsupervised hierarchical cluster analysis identified an IDH1 mutation-like methylation signature in approximately half of the CIMP-positive cancers. IDH1 mutation appears to cause CIMP in a small proportion of BRAF mutant, microsatellite stable colorectal cancers. This study provides a precedent that a single gene mutation may cause CIMP in colorectal cancer, and that this will be associated with a specific epigenetic signature and clinicopathological features.     

Nest predation increases with parental activity: separating nest site and parental activity effects.

Alexander Skutch hypothesized that increased parental activity can increase the risk of nest predation. We tested this hypothesis using ten open-nesting bird species in Arizona, USA. Parental activity was greater during the nestling than incubation stage because parents visited the nest frequently to feed their young during the nestling stage. However, nest predation did not generally increase with parental activity between nesting stages across the ten study species. Previous investigators have found similar results. We tested whether nest site effects might yield higher predation during incubation because the most obvious sites are depredated most rapidly. We conducted experiments using nest sites from the previous year to remove parental activity. Our results showed that nest sites have highly repeatable effects on nest predation risk; poor nest sites incurred rapid predation and caused predation rates to be greater during the incubation than nestling stage. This pattern also was exhibited in a bird species with similar (i.e. controlled) parental activity between nesting stages. Once nest site effects are taken into account, nest predation shows a strong proximate increase with parental activity during the nestling stage within and across species. Parental activity and nest sites exert antagonistic influences on current estimates of nest predation between nesting stages and both must be considered in order to understand current patterns of nest predation, which is an important source of natural selection.     

Diversity,heterogeneity and consumer pressure in a tropical rocky intertidal community

Summary Previous studies indicated that at Taboguilla Island (Gulf of Panama), persistence of many intertidal organisms depended on holes and crevices in the rock as refuges from both vertebrate (fishes) and invertebrate (crabs, gastropods, chitons) consumers. Here, we evaluate the influences of substratum heterogeneity and consumers on patterns of diversity of sessile organisms in this habitat. Local substratum topography is highly variable, ranging from smooth to irregular surfaces. Algal crusts typically dominate all low zone rock surfaces, and most other sessile spegies (invertebrates and foliose algae) occur in holes and crevices. Number (S) and diversity (H) of sessile species is lower on homogeneous surfaces than on heterogeneous surfaces. Rate of increase in S with area sampled is positively correlated with substratum heterogeneity; number of species sampled per transect at a homogeneous site would be about 10 vs 30 to 60 on a heterogeneous site. Large fishes and crabs forage intensively over both substratum types, but cannot enter holes and crevices to eat prey. Gastropods, chitons, limpets, and small crabs feed on both substrata but vary in abundance from hole to hole. Prey mortality is thus intense and constant on open surfaces, but variable in space and time in holes and crevices. When consumers are excluded from the general rock surface, algal crusts are settled upon and overgrown by foliose algae, hydrozoans, and sessile invertebrates, particularly bivalves. Both S and H first increase, as sessile species invade and become more abundant, and then decrease as the rock oyster Chama echinata begins to outcompete other species and dominate primary space. Hence, consumers normally keep local diversity low by removing most sessile prey from open surfaces.In these experiments, a consumer pressure gradient was established by removing 0, 1, 2, 3, and all of 4 distinct groups of consumers. As predicted by the intermediate disturbance hypothesis, lowest diversity occurred at lowest (total exclusion) and highest consumer pressure (normal condition). Highest diversity occurred at intermediate consumer pressure. Unexplained variation in this relationship is probably due to quantitative and qualitative differences in consumer regime, variation among plots in substratum heterogeneity, and insufficient time for competitive dominance by Chama to be fully expressed. On a small (0.25 m²) spatial scale, consumers maintain low diversity by keeping prey scarce and causing local extinctions. On larger spatial scales, they may maintain and even produce high diversity through their interaction with substratum heterogeneity and possibly low dispersal rates of sessile species.     

Histamine as a marker for hydroxyl radicals

During inflammation an influx of neutrophils and release of mediators from mast cells (such as histamine) take place. The stimulated neutrophils can produce reactive oxygen species (ROS). One of these ROS is the highly reactive hydroxyl radical (OH(.)). It would be interesting to be able to quantify the extent of ROS formation. We investigated if histamine which is present at the inflammation site can serve as an endogenous marker for the formation of OH(.). We found that histamine after incubation with OH(.) gave two distinct products in our HPLC system. One of the products gave the same characteristics as the synthesized 2-imidazolone derivative of histamine. This suggests that this derivative will be formed when histamine is incubated with OH(.).