To the 30-nm chromatin fiber and beyond

Chromatin fibers are intrinsically dynamic macromolecular complexes whose biological functions are intimately linked with their structure and interactions with chromatin-associated proteins (CAPs). Three-dimensional architectural transitions between or within the two co-existing chromatin types referred to as euchromatin and heterochromatin have been associated with activation or repression of nuclear functions. The presence of specific subsets of chromosomal proteins co-existing with the different chromatin conformations suggests a functional significance for their co-localization. The major points of emphasis of this review will assess the structure, function and recently documented exchanges amongst various members of the CAP family.     

The Influence of Agricultural Trade and Livestock Production on the Global Phosphorus Cycle

Trends of increasing agricultural trade, increased concentration of livestock production systems, and increased human consumption of livestock products influence the distribution of nutrients across the global landscape. Phosphorus (P) represents a unique management challenge as we are rapidly depleting mineable reserves of this essential and non-renewable resource. At the same time, its overuse can lead to pollution of aquatic ecosystems. We analyzed the relative contributions of food crop, feed crop, and livestock product trade to P flows through agricultural soils for 12 countries from 1961 to 2007. Due to the intensification of agricultural production, average soil surface P balances more than tripled from 6 to 21 kg P ha⁻¹ between 1961 and 2007 for the 12 study countries. Consequently, countries that are primarily agricultural exporters carried increased risks for water pollution or, for Argentina, reduced soil fertility due to soil P mining to support exports. In 2007, nations imported food and feed from regions with higher apparent P fertilizer use efficiencies than if those crops were produced domestically. However, this was largely because imports were sourced from regions depleting soil P resources to support export crop production. In addition, the pattern of regional specialization and intensification of production systems also reduced the potential to recycle P resources, with greater implications for livestock production than crop production. In a globalizing world, it will be increasingly important to integrate biophysical constraints of our natural resources and environmental impacts of agricultural systems into trade policy and agreements and to develop mechanisms that move us closer to more equitable management of non-renewable resources such as phosphorus.     

Systematic mutagenesis of the murine gammaherpesvirus 68 M2 protein identifies domains important for chronic infection

Murine gammaherpesvirus 68 (MHV68) infection of inbred mice represents a genetically tractable small-animal model for assessing the requirements for the establishment of latency, as well as reactivation from latency, within the lymphoid compartment. By day 16 postinfection, MHV68 latency in the spleen is found in B cells, dendritic cells, and macrophages. However, as with Epstein-Barr virus, by 3 months postinfection MHV68 latency is predominantly found in isotype-switched memory B cells. The MHV68 M2 gene product is a latency-associated antigen with no discernible homology to any known cellular or viral proteins. However, depending on experimental conditions, the M2 protein has been shown to play a critical role in both the efficient establishment of latency in splenic B cells and reactivation from latently infected splenic B cells. Inspection of the sequence of the M2 protein reveals several hallmarks of a signaling molecule, including multiple PXXP motifs and two potential tyrosine phosphorylation sites. Here, we report the generation of a panel of recombinant MHV68 viruses harboring mutations in the M2 gene that disrupt putative functional motifs. Subsequent analyses of the panel of M2 mutant viruses revealed a functionally important cluster of PXXP motifs in the C-terminal region of M2, which have previously been implicated in binding Vav proteins (P. A. Madureira, P. Matos, I. Soeiro, L. K. Dixon, J. P. Simas, and E. W. Lam, J. Biol. Chem. 280:37310-37318, 2005; L. Rodrigues, M. Pires de Miranda, M. J. Caloca, X. R. Bustelo, and J. P. Simas, J. Virol. 80:6123-6135, 2006). Further characterization of two adjacent PXXP motifs in the C terminus of the M2 protein revealed differences in the functions of these domains in M2-driven expansion of primary murine B cells in culture. Finally, we show that tyrosine residues 120 and 129 play a critical role in both the establishment of splenic latency and reactivation from latency upon explant of splenocytes into tissue culture. Taken together, these analyses will aide future studies for identifying M2 interacting partners and B-cell signaling pathways that are manipulated by the M2 protein.     

Solid state fluorescence of lyophilized proteins

Fluorescence spectroscopy has been used to measure changes in the tertiary structure of proteins in the solution state. The sensitivity of fluorescence to the protein tryptophan environment has made it a useful tool for studying protein conformation and stability. Using fluorescence spectroscopy to probe structural alterations in lyophilized proteins has been limited due to technical challenges and overwhelming background light scattering. We have investigated the possibility of analyzing lyophilized proteins using the Cary-Eclipse spectrofluorometer by monitoring the fluorescence of the protein therapeutic after subjecting the lyophilized cake to heat-induced accelerated degradation. We have been able to obtain reproducible fluorescence spectra, detecting possible structural changes under these conditions. Fluorescence and circular dichroism spectroscopic analyses of the reconstituted proteins indicated that changes in fluorescence intensities observed in the solid state could be correlated to that in solution and to possible tertiary structural changes. Size exclusion chromatography analysis of protein Y subject to accelerated degradation showed a correlation between decreasing fluorescence intensity and increasing protein Y tetramer in solution, consistent with long-term stability. This suggests that solid state, intrinsic protein fluorescence measurements using the Cary-Eclipse holder may be feasible for long-term stability studies and formulation development.     

PKC phosphorylates GluA1-Ser831 to enhance AMPA receptor conductance

AMPA receptors mediate fast excitatory synaptic transmission in the brain, and are dynamically regulated by phosphorylation of multiple residues within the C-terminal domain. CaMKII phosphorylates Ser831 within the AMPA receptor GluA1 subunit to increase single channel conductance, and biochemical studies show that PKC can also phosphorylate this residue. In light of the discovery of additional PKC phosphorylation sites within the GluA1 C-terminus, it remains unclear whether PKC phosphorylation of Ser831 increases GluA1 conductance in intact receptors. Here, we report that the purified, catalytic subunit of PKC significantly increases the conductance of wild-type GluA1 AMPA receptors expressed in the presence of stargazin in HEK293T cells. Furthermore, the mutation GluA1-S831A blocks the functional effect of PKC. These findings suggest that GluA1 AMPA receptor conductance can be increased by activated CaMKII or PKC, and that phosphorylation at this site provides a mechanism for channel modulation via a variety of protein signaling cascades.     

Successful captive breeding of Mitchell's water monitor,Varanus mitchelli (Mertens 1958), at Perth Zoo

Mitchell's water monitors (Varanus mitchelli) have been maintained on display at Perth Zoo since 1997. They are generally a timid species but have been maintained and bred in a mixed species water feature exhibit. In this article we describe their captive management and behavior with an insight into their reproductive biology. Between 2002 and 2005, 11 clutches were laid ranging from 13 to 27 (X? = 20) eggs from one female. Egg size ranged between 3.00 and 6.08 g (X? = 4.77 g) in weight, 22.8 and 31.9 mm (X? = 28.3 mm) in length, and 11.1 and 19.3 mm (X? = 17.1 mm) in width. Oviposition included double and triple clutches ranging between 41 and 60 days apart (X? = 48 days), events n = 6. Four clutches were incubated at three different temperatures and hatchlings emerged after 157–289 days. The weight of the hatchlings ranged between 2.60 and 4.52 g (X? = 4.34 g). Total length ranged between 140.1 and 178.0 mm (X? = 165.9 mm) and snout–vent length ranged from 53.8 to 70.0 (X? = 64.4 mm). Juvenile growth and development information is presented from hatching through to approximately 3 years of age. Zoo Biol 29:615–625, 2010. © 2009 Wiley‐Liss, Inc.