Cloning and Functional Characterization of Two BTB Genes in the Predatory Mite Metaseiulus occidentalis

Proteins containing the BTB (Bric-à-brac, tramtrack, and Broad Complex) domain typically share low sequence similarities and are involved in a wide range of cellular functions. We previously identified two putative and closely related BTB genes, BTB1 and BTB2, in the genome of the predatory mite Metaseiulus occidentalis. In the current study, full-length BTB1 and BTB2 cDNAs were cloned and sequenced. BTB1 and BTB2 encode proteins of 380 and 401 amino acids, respectively. BTB1 and BTB2 proteins each contain an N-terminal BTB domain and no other identifiable domains. Thus, they belong to a large category of BTB-domain proteins that are widely distributed in eukaryotes, yet with largely unknown function(s). BTB1 and BTB2 gene knockdowns in M. occidentalis females using RNAi reduced their fecundity by approximately 40% and 73%, respectively, whereas knockdown had no impact on their survival or the development of their offspring. These findings suggest these two proteins may be involved in processes related to egg production in this predatory mite, expanding the list of functions attributed to these diverse proteins.     

Expression of apo-aequorin during embryonic development; how much is needed for calcium imaging?

Aequorin is a bioluminescent calcium indicator consisting of a 21 kDa protein (apo-aequorin) that is covalently linked to a lipophilic cofactor (coelenterazine). The aequorin gene can be expressed in a variety of cell lines and tissues, allowing non-invasive calcium imaging of specific cell types. In the present paper, we describe the possibilities and limitations of calcium imaging with genetically introduced apo-aequorin during embryonic development. By injecting aequorin into sea urchin, Drosophila and zebrafish eggs, we found that higher aequorin concentrations are needed in smaller eggs. Our results suggest that for measuring resting levels of free cytosolic calcium, one needs aequorin concentrations of at least 40 μM in sea urchin eggs, 2 μM in Drosophila eggs, and only 0.11 μM in zebrafish eggs. A simple assay was used to determine the absolute concentrations of expressed apo-aequorin and the percentage of aequorin formation in vivo. The use of this assay is illustrated by expression of the aequorin gene in Drosophila oocytes. These oocytes form up to 1 μM apo-aequorin. In our hands, only 0.3% of this apo-aequorin combined with coelenterazine entering from the medium to form aequorin, which was not enough for calcium imaging of the oocytes, but did allow in vivo imaging of the ovaries. From these studies, we conclude that coelenterazine entry into the cell is the rate limiting step in aequorin formation. Based on the rate of coelenterazine uptake in Drosophila, we estimate that complete conversion of 1 μM apo-aequorin would take 50 days in zebrafish eggs, 19 days in Drosophila eggs, 7 days in sea urchin eggs or 18 h in a 10 gm tissue culture cell. Our results suggest that work based on genetically introduced apo-aequorin will be most successful when large amounts of small cells can be incubated in coelenterazine. During embryonic development this would involve introducing coelenterazine into the circulatory system of late stage embryos. Calcium imaging in early stage embryos may be best done by injecting aequorin, which circumvents the slow process of coelenterazine entry.     

Reproducibility of non-fasting plasma metabolomics measurements across processing delays

Introduction

Processing delays after blood collection is a common pre-analytical condition in large epidemiologic studies. It is critical to evaluate the suitability of blood samples with processing delays for metabolomics analysis as it is a potential source of variation that could attenuate associations between metabolites and disease outcomes.

Objectives

We aimed to evaluate the reproducibility of metabolites over extended processing delays up to 48 h. We also aimed to test the reproducibility of the metabolomics platform.

Methods

Blood samples were collected from 18 healthy volunteers. Blood was stored in the refrigerator and processed for plasma at 0, 15, 30, and 48 h after collection. Plasma samples were metabolically profiled using an untargeted, ultrahigh performance liquid chromatography–tandem mass spectrometry (UPLC–MS/MS) platform. Reproducibility of 1012 metabolites over processing delays and reproducibility of the platform were determined by intraclass correlation coefficients (ICCs) with variance components estimated from mixed-effects models.

Results

The majority of metabolites (approximately 70% of 1012) were highly reproducible (ICCs?≥?0.75) over 15-, 30- or 48-h processing delays. Nucleotides, energy-related metabolites, peptides, and carbohydrates were most affected by processing delays. The platform was highly reproducible with a median technical ICC of 0.84 (interquartile range 0.68–0.93).

Conclusion

Most metabolites measured by the UPLC–MS/MS platform show acceptable reproducibility up to 48-h processing delays. Metabolites of certain pathways need to be interpreted cautiously in relation to outcomes in epidemiologic studies with prolonged processing delays.

     

Why do kangaroo rats (Dipodomys spectabilis) footdrum at snakes?

We examined alternative hypotheses for the benefits of footdrummingin the presence of snakes by the banner-tailed kangaroo rat,Dipodomys spectabitis, by testing whether the target of thesignal includes conspecifics, the predator or both. Footdrummingrecorded in the field revealed that rats altered their footdrummingsignatures when drumming at snakes. In playback tests, however,neighbors failed to show any measurable change in behavior tobroadcasts of the snake drumming pattern, but mothers footdrummedsignificantly more than nonmothen in the presence of a tetheredsnake. Gopher snakes, Pituophis melanolsucus affinis, respondedto footdrumming vibrations created by a mechanical thumper.Nonhungry snakes avoided footdrumming, while hungry snakes approachedthe seismic footdrumming. Snakes decreased stalking rates asfootdrumming increased, but they spent more time stalking drummingthan nondnimming rats. We conclude that D. spectabilis footdrumsin individual defense and in parental care, rather than to warnadult conspecfics. Footdrumming deters pursuit by informingthe snake that the rat is alert and the chances of predationare low. We find little evidence that footdrumming startles,confuses, or harasses the snake. Hungry gopher snakes, however,may locate prey by eavesdropping on territorial footdrumming     

A Simplified Nissl Stain with Thionin

Recently two articles on the use of thionin as a cell stain for neurological materials have appeared. One utilizes a solution buffered in the acid range³; the other uses a “steaming” staining solution⁴. For some time we have been using thionin as a routine stain after either formalin or alcohol fixation and our method is so simple and has given such satisfactory results with a variety of brands of thionin that it seemed to be worthy of more general use. Briefly the method consists of placing the celloidin sections in a 0.05% solution of Li₂CO₃ (the percentage of Li₂CO₃ is non-critical) for about 5 minutes and then grossly overstaining in a 0.25% solution of thionin in a 0.05% solution of Li₂CO₃ in distilled water. The overstaining is necessary if all the stain is to be removed from the background. The sections are then passed through distilled water, 70 or 80% alcohol, two changes of butyl alcohol, two changes of xylene and mounted with Clarite. For most material, split mica cover-slips are quite satisfactory. The time of differentiation may be considerably lessened by the use of the differentiator recommended by Neumann (1942) except that we find the chloroform superfluous and transfer the sections to the aniline solution from 95% alcohol. Less fading seems to occur if the aniline differentiator is followed by a saturated solution of Li₂CO₃ in 95% alcohol.