Effect of phytase supplementation on phosphorus digestibility in low-phytate barley fed to finishing pigs

Forty crossbred barrows (Camborough 15 Line female×Canabred sire) weighing an average of 79.6±8.0?kg were used in a factorial design experiment (5 barleys×2 enzyme levels) conducted to determine the effects of phytase supplementation on nutrient digestibility in low-phytate barleys fed to finishing pigs. The pigs were assigned to one of 10 dietary treatments comprised of a normal 2-rowed, hulled variety of barley (CDC Fleet, 0.26% phytate) or 2 low-phytate hulled genotypes designated as LP422 (0.14% phytate) and LP635 (0.09% phytate). A normal, hulless barley (CDC Dawn, 0.26% phytate) and a hulless genotype designated as LP422H (0.14% phytate) were also included. All barleys were fed with and without phytase (Natuphos 5000 FTU/kg). The diets fed contained 98% barley, 0.5% vitamin premix, 0.5% trace mineral premix, 0.5% NaCl and 0.5% chromic oxide but no supplemental phosphorus. The marked feed was provided for a 7-day acclimatization period, followed by a 3-day faecal collection. In the absence of phytase, phosphorus digestibility increased substantially (P<0.05) as the level of phytate in the barley declined. For the hulled varieties, phosphorus digestibility increased from 12.9% for the normal barley (0.26% phytate) to 35.3 and 39.8% for the two low-phytate genotypes (0.14 and 0.09% phytate respectively). For the hulless varieties, phosphorus digestibility increased from 9.2% for the normal barley (0.26% phytate) to 34.7% for the hulless variety with 54% of the normal level of phytate (0.14% phytate). In contrast, when phytase was added to the diet, there was little difference in phosphorus digestibility between pigs fed normal barley and those fed the low-phytate genotypes (significant barley×enzyme interaction, P=0.01). For the hulled varieties, phosphorus digestibility was 50.1% for the barley with the normal level of phytate (0.26% phytate) compared with 51.1 and 52.4% for the varieties with 54 and 35% of the normal level of phytate (0.14 and 0.09% phytate respectively). For the hulless varieties, phosphorus digestibility increased from 47.1% for the normal barley (0.26% phytate) to 54.4% for the hulless variety with 54% of the normal level of phytate (0.14% phytate). In conclusion, both supplementation with phytase and selection for low-phytate genotypes of barley were successful in increasing the digestibility of phosphorus for pigs. Unfortunately, the effects did not appear to be additive. Whether or not swine producers will choose low-phytate barley or supplementation with phytase as a means to improve phosphorus utilization, will likely depend on the yield potential of low-phytate barley and the additional costs associated with supplementation with phytase.     

Membrane lipids and ethanol tolerance in the mouse. The influence of dietary fatty acid composition

Mice of the TO Swiss strain received diets containing different amounts of saturated or unsaturated fat throughout life. These diets produced characteristic changes in cardiac phospholipid fatty acid composition, but produced no significant differences in fatty acid composition of phospholipids from a crude membrane fraction of brain. When littermates of these animals were exposed to ethanol vapour in an inhalation chamber it was observed that mice which had received a diet high in saturated fat lost the righting reflex at an estimated concentration of ethanol in blood higher than that required for mice receiving a control diet, or a diet rich in polyunsaturated fat. Analysis of the brain membrane fraction from those animals which had received ethanol revealed that mice receiving the highly saturated fat diet now had a significantly greater proportion of saturated fatty acids in brain membrane phospholipids. These results are discussed in relation to the hypothesis that brain membrane lipid composition may influence the behavioural response to ethanol.     

Algorithms and software for support of gene identification experiments

MOTIVATION: Gene annotation is the final goal of gene prediction algorithms. However, these algorithms frequently make mistakes and therefore the use of gene predictions for sequence annotation is hardly possible. As a result, biologists are forced to conduct time-consuming gene identification experiments by designing appropriate PCR primers to test cDNA libraries or applying RT-PCR, exon trapping/amplification, or other techniques. This process frequently amounts to 'guessing' PCR primers on top of unreliable gene predictions and frequently leads to wasting of experimental efforts. RESULTS: The present paper proposes a simple and reliable algorithm for experimental gene identification which bypasses the unreliable gene prediction step. Studies of the performance of the algorithm on a sample of human genes indicate that an experimental protocol based on the algorithm's predictions achieves an accurate gene identification with relatively few PCR primers. Predictions of PCR primers may be used for exon amplification in preliminary mutation analysis during an attempt to identify a gene responsible for a disease. We propose a simple approach to find a short region from a genomic sequence that with high probability overlaps with some exon of the gene. The algorithm is enhanced to find one or more segments that are probably contained in the translated region of the gene and can be used as PCR primers to select appropriate clones in cDNA libraries by selective amplification. The algorithm is further extended to locate a set of PCR primers that uniformly cover all translated regions and can be used for RT-PCR and further sequencing of (unknown) mRNA.      

Recent evolutionary history of American Onchocerca volvulus, based on analysis of a tandemly repeated DNA sequence family

Polymerase chain reaction (PCR) products were characterized for a repeated sequence family (designated "O-150") of the human filarial parasite Onchocerca volvulus. In phylogenetic inferences, the O-150 sequences clustered into closely related groups, suggesting that concerted evolution maintains sequence homology in this family. Using a novel mathematical model based on a nested application of an analysis of variance, we demonstrated that African rainforest and savannah strain parasite populations are significantly different. In contrast, parasites collected in the New World are indistinguishable from African savannah strains of O. volvulus. This finding supports the hypothesis that onchocerciasis was recently introduced into the New World, possibly as a result of the slave trade.      

Intake,utilization, and composition of browses consumed by the Sumatran rhinoceros (Dicerorhinus sumatrensis harissoni) in captivity in Sabah,Malaysia

The significant threats to the fewer than 30 wild Dicerorhinus sumatrensis harrissoni, the Bornean sub‐species of the Sumatran rhinoceros, are obvious and include poaching, habitat loss, and environmental changes. Subtle effects on population survival, however, include nutritional or other diseases, which affect morbidity and reproductive success. To address these issues and focus on animals within their natural range, this feeding trial and analysis characterizes the diet fed to the only three captive D. s. harissoni in the world housed at the Sumatran Rhino Breeding Center (SRBC) in Sabah, Malaysia. The study provides an indication of the variance in nutrient composition in local browse, and a comparison with other captive feeding studies. Mean dry matter intake (DMI), comprising ∼90% native browse species, equaled 3.55% (range=2.8–4.1%) of body mass, with a dry matter digestibility averaging 82%. The mean crude protein content of native browses (n=8 spp.) averaged 11.2% (DM basis; range=5–23%, depending on plant part), with available protein measured at 7.8%. Leaves contained significantly (P<0.001) more crude protein, and less (P<0.001) fiber (neutral detergent fiber, acid detergent fiber, and lignin) than twig fractions analyzed, but animals consumed both fractions rather non‐selectively. Of minerals quantified, Na and P were potentially limiting in native browses compared to equid nutrient requirements, and Se may have been marginal. Ca, K, and Fe levels in particular were high in most native browses. Specifically, iron ranged from 45–1,400 mg/kg (mean=230 mg/kg DM), with only three preferred species containing this nutrient at <100 mg/kg. Excess dietary iron has been linked with health issues in browsing rhinos. Additionally, high levels of other minerals (for example Mn, with a mean of 382 mg/kg DM in this study), can precipitate deficiencies in crucial elements such as calcium. In view of the structural and chemical variations of the different parts of the same plants, dietary guidelines should be developed and incorporated into the basic husbandry of these animals that include increasing the number and combinations of species of browse offered daily to adjust for variance in protein, fiber, other nutritional components and food preference, to increasing the quantity of food offered per day based on desired weight gain and reproductive status. This, combined with information on the free‐ranging rhinoceros diet composition, and additional intake and digestibility trials (with concurrent serum analysis to evaluate nutritional status) should greatly assist in providing optimal diets for this highly endangered species. Zoo Biol 0:1–15, 2006. © 2006 Wiley‐Liss, Inc.     

Polymorphisms of IL-6 174 G/C, IL-10 -592 C/A and risk of HIV/AIDS among North Indian population

A growing body of evidence suggests that host genetic factors play an important role both in susceptibility to HIV infection and progression to AIDS. The present study aimed at evaluating the role of IL-6 and IL-10 gene polymorphisms on the risk of HIV susceptibility and disease progression among North Indian patients. The polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) techniques were applied to genotype IL-6 and IL-10. 300 seropositive and an equal number of age- and sex-matched seronegative control subjects were recruited for this study. There was statistically no significant variation in the frequencies of IL-6 and IL-10 genotypes among cases and controls. However, statistically non-significant association for risk of rapid disease progression was observed due to the combined effect of the IL-6 homozygous CC genotype and CC of IL-10, OR = 1.62, 95% CI = 0.38–6.91. Therefore, combined effects of the CC of IL-6 and CC of IL-10 might reduce the hosts ability to hinder viral replication after infection.     

Locomotion and habitat utilization in free-rangingTarsius bancanus: A preliminary report

Four adultTarsius bancanus were followed for a total of over 120 hrs in Sepilok Forest Reserve, Sabah, using radiotracking techniques. Seven hundred and twenty-two records of locomotor and postural behaviour were gathered.Tarsius bancanus travels a mean of 1,800 m per night, over large (4.5 to 11.25 ha) ranges. They move at a mean height of 0.89 m, utilizing primarily vertical sapling trunks of diametre 2 to 4 cm. Lateral movement is carried out largely by leaping.Tarsius were found on the ground in 5.3% of cases, but movement on the ground is very largely restricted to short investigative movements by walking. Climbing is mostly related to foraging behaviour and characteristically occurs on relatively small supports.Tarsius bancanus' locomotion is similar to, but more specialized than that ofT. spectrum, Galago alleni, andGalago senegalensis, all of which have rather similar patterns of habitat utilization. We suggest that the energetic constraints of small body size together with the need to patrol large home ranges may have lead both toTarsius bancanus extreme degree of locomotor specialization and to its exclusive animalivory.     

Reproductive traits of the freshwater oyster Etheria elliptica (Bivalvia: Etheriidae) in the Pendjari River,Benin: implications for conservation

The African freshwater oyster Etheria elliptica, which is of great economic importance throughout the continent, is facing overharvesting in many fisheries in West Africa. Its reproductive traits (sex ratio, size at sexual maturity, oocyte diameter and fecundity) were studied at four stations located along the Pendjari River, northern Benin, in April 2013. Histological techniques were implemented to identify sex and gonad development stages. Oocyte sizes were measured based on the histological images and mean oocyte diameter was 38 µm. Fecundity, estimated by counting the developing eggs, averaged 106 724 eggs and increased significantly with shell size. The average sex ratio was approximately 1:1. Hermaphrodites were rare. Males reached sexual maturity at 57.6 mm dorsoventral height, earlier than females at 64.7 mm. The majority of the oyster specimens were in ripe-spawning stages, indicating that reproductive activities partly took place towards the end of the dry season. Both mature and immature individuals were subjected to harvesting at all the investigated fishing sites. The mean size of exploited oysters was 60.6 mm, lower than the size of females at maturity. Management strategies must enforce the minimum size of 65 mm required for harvesting, particularly in open access sites where juveniles are mostly harvested.