Genomic islands of speciation or genomic islands and speciation?

Populations of the malaria mosquito, Anopheles gambiae, are comprised of at least two reproductively isolated, sympatric populations. In this issue, White et al. (2010) use extensive sampling, high‐density tiling microarrays, and an updated reference genome to clarify and expand our knowledge of genomic differentiation between these populations. It is now clear that DNA near the centromeres of all three chromosomes are in near‐perfect disequilibrium with each other. This is in stark contrast to the remaining 97% of the assembled genome, where fixed differences between populations have not been found, and many polymorphisms are shared. This pattern, coupled with direct evidence of hybridization in nature, supports models of “mosaic” speciation, where ongoing hybridization homogenizes variation in most of the genome while loci under strong selection remain in disequilibrium with each other. However, unambiguously demonstrating that selection maintains the association of these pericentric “speciation islands” in the face of gene flow is difficult. Low recombination at all three loci complicates the issue, and increases the probability that selection unrelated to the speciation process alters patterns of variation in these loci. Here, we discuss these different scenarios in light of this new data.     

Evidence for range stasis during the latter Pleistocene for the Atlantic Coastal Plain endemic genus,Pyxidanthera Michaux

The general phylogeographical paradigm for eastern North America (ENA) is that many plant and animal species retreated into southern refugia during the last glacial period, then expanded northward after the last glacial maximum (LGM). However, some taxa of the Gulf and Atlantic Coastal Plain (GACP) demonstrate complex yet recurrent distributional patterns that cannot be explained by this model. For example, eight co‐occurring endemic plant taxa with ranges from New York to South Carolina exhibit a large disjunction separating northern and southern populations by >300 km. Pyxidanthera (Diapensiaceae), a plant genus that exhibits this pattern, consists of two taxa recognized as either species or varieties. We investigated the taxonomy and phylogeography of Pyxidanthera using morphological data, cpDNA sequences, and amplified fragment length polymorphism markers. Morphological characters thought to be important in distinguishing Pyxidanthera barbulata and P. brevifolia demonstrate substantial overlap with no clear discontinuities. Genetic differentiation is minimal and diversity estimates for northern and southern populations of Pxyidanthera are similar, with no decrease in rare alleles in northern populations. In addition, the northern populations harbour several unique cpDNA haplotypes. Pyxidanthera appears to consist of one morphologically variable species that persisted in or near its present range at least through the latter Pleistocene, while the vicariance of the northern and southern populations may be comparatively recent. This work demonstrates that the refugial paradigm is not always appropriate and GACP endemic plants, in particular, may exhibit phylogeographical patterns qualitatively different from those of other ENA plant species.     

An integrated biogeochemical and economic analysis of bioenergy crops in the Midwestern United States

This study integrates a biophysical model with a county‐specific economic analysis of breakeven prices of bioenergy crop production to assess the biophysical and economic potential of biofuel production in the Midwestern United States. The bioenergy crops considered in this study include a genotype of Miscanthus, Miscanthus×giganteus, and the Cave‐in‐Rock breed of switchgrass (Panicum virgatum). The estimated average peak biomass yield for miscanthus in the Midwestern states ranges between 7 and 48 metric tons dry matter per hectare per year ( t DM ha^?1 yr^?1), while that for switchgrass is between 10 and 16 t DM ha^?1 yr^?1. With the exception of Minnesota and Wisconsin, where miscanthus yields are likely to be low due to cold soil temperatures, the yield of miscanthus is on average more than two times higher than yield of switchgrass. We find that the breakeven price, which includes the cost of producing the crop and the opportunity cost of land, of producing miscanthus ranges from $53 t^?1 DM in Missouri to $153 t^?1 DM in Minnesota in the low‐cost scenario. Corresponding costs for switchgrass are $88 t^?1 DM in Missouri to $144 t^?1 DM in Minnesota. In the high‐cost scenario, the lowest cost for miscanthus is $85 t^?1 DM and for switchgrass is $118 t^?1 DM, both in Missouri. These two scenarios differ in their assumptions about ease of establishing the perennial crops, nutrient requirements and harvesting costs and losses. The differences in the breakeven prices across states and across crops are mainly driven by bioenergy and row crop yields per hectare. Our results suggest that while high yields per unit of land of bioenergy crops are critical for the competitiveness of bioenergy feedstocks, the yields of the row crops they seek to displace are also an important consideration. Even high yielding crops, such as miscanthus, are likely to be economically attractive only in some locations in the Midwest given the high yields of corn and soybean in the region.     

Phylogenetic relationships of the lower Caenogastropoda (Mollusca, Gastropoda, Architaenioglossa, Campaniloidea, Cerithioidea) as determined by partial 18s rDNA sequences

Phylogenetic analyses of partial sequences spanning approximately 450 nucleotides near the 5'end of the 18s rDNA strongly support the monophyly of Apogastropoda and its constituent clades, Caenogastropoda and Heterobranchia. Representatives of the architaenioglossan groups Cyclophoroidea, Ampullariidae and Viviparidae invariably emerge within Caenogastropoda in all analyses. While the Cyclophoroidea and Ampullariidae are monophyletic, the varying position of Viviparidae in all outcomes contradicts its hypothesized sister group relationship with Ampullariidae, and thus the monophyly of Ampullarioidea. Because of the position of Viviparidae, Architaenioglossa does not emerge as a clade in any of our analyses. Campanile consistently emerges between Cyclophoroidea and Cerithioidea, or in a clade with Cyclophoroidea and Ampullariidae, a position not predicted by previous morphological studies. Maximum parsimony analyses of sequence data show Caenogastropoda to comprise a series of sequentially diverging higher taxa. However, maximum likelihood analyses as well as maximum parsimony analyses using only trans-versions divide Caenogastropoda into two clades, one containing the architaenioglossan taxa, Campaniloidea and Cerithioidea, the other containing the higher caenogastropod taxa included in Eucaenogastropoda (Haszprunar, 1988) [= Hypsogastropoda (Ponder & Lindberg 1997)l. Denser taxon sampling revealed insertions to be present in the 18s rDNA gene of several caenogastropod taxa. Earlier reports (Harasewych et al. 1997b) of reduced sequence divergence levels in Caenogastropoda are shown to be restricted to Hypsogastropoda. Based on a broader taxonomic sampling, divergence levels within Caenogastropoda are comparable to those found within Heterobranchia.     

Behavioural fever in the Senegalese grasshopper, Oedaleus senegalensis, and its implications for biological control using pathogens

1. Thermoregulatory behaviour of the Senegalese grasshopper, Oedaleus senegalensis (Krauss), was investigated in the field following a spray application of an oil-based formulation of Metarhizium flavoviride Gams and Rozsypal in Niger, West Africa.
2. Measurements of environmental temperature, wind speed and solar radiation were made in conjunction with measurements of internal body temperatures of grasshoppers from a control (unsprayed) and treated plot using microthermocouples and hand-held thermometers. Grasshoppers were monitored for 4 days from the third day after application.
3. Oedaleus senegalensis utilized a range of thermoregulatory behaviours to maximize body temperatures during periods of low insolation and ambient temperature, and to minimize excessive heat loading during the hottest periods. Preferred body temperature of uninfected grasshoppers was 39 °C, with a range from 24 °C in the early morning to a high of 46 °C during periods of high insolation and ambient temperature.
4. Infected grasshoppers altered their thermoregulatory behaviour and showed a behavioural fever response to the pathogen. Preferred body temperatures of infected individuals were raised to a new set point of ≈ 42 °C. This is believed to be the first evidence for a behavioural fever in response to a microbial infection for any natural population. In the present study, its effects appeared to provide little therapeutic advantage to hosts infected following application. Preliminary evidence from other studies, however, indicates that modifications to host thermoregulation could be a significant constraint to the pathogen and may limit its impact under certain conditions.     

The Challenge of Pneumocystis carinii Culture1

ABSTRACT. Published and unpublished data on the cultivation of P. carinii were reviewed by a panel of investigators convened by the National Institutes of Health. Although several cell culture systems allow propagation of P. carinii for a limited time with modest rates of replication, these have not proved adequate for isolation of P. carinii in sufficient quantity to explore important basic biological investigation. Attempts at cell-free culture have yielded only transient proliferation. Because much of the unsuccessful work on cultivation of the organism has been unpublished, the panel agreed that these data may be useful to other investigators in designing experimental strategies for cultivation. Therefore, the purpose of this report is to make available this information to researchers, lest others unknowingly repeat unsuccessful methods. It is hoped that by documenting the history and the complexities of Pneumocystis culture, renewed interest and efforts will be directed toward this fundamental scientific challenge.     

Responses of the blister beetle Hycleus apicicornis to visual stimuli

Insect attraction to host plants may be partly mediated by visual stimuli. In the present study, the responses of adult Hycleus apicicornis (Guér.) (Coleoptera: Meloidae) to plant models of different colours, different combinations of two colours, or three hues of blue of different shapes are compared. Single‐colour models comprised the colours sky blue, bright green, yellow, red, white and black. Sky blue (reflecting light in the 440–500 nm region) is the most attractive, followed by white, which reflects light over a broader range (400–700 nm). On landing on sky blue targets, beetles exhibit feeding behaviour immediately. When different hues of blue (of different shapes) are compared, sky blue is preferred over turquoise, followed by dark blue, indicating that H. apicicornis is more attracted to lighter hues of blue than to darker ones. No significant differences are found between the three shapes (circle, square and triangle) tested, suggesting that reflectance associated with colour could be a more important visual cue than shape for host location by H. apicicornis. The preference of H. apicicornis for sky blue can be exploited in designing an attractive trap for its management.     

Predicting mistletoe seed shadow and patterns of seed rain from movements of the mistletoebird,Dicaeum hirundinaceum

Abstract At the scale of an individual host, mistletoes are aggregated in space, resulting from the preferential perching of mistletoe dispersers on previously infected plants. We hypothesized that the landscape scale movement patterns of mistletoe dispersers will also promote the aggregation of mistletoes. This hypothesis was tested by predicting the seed shadow for box mistletoe Amyema miquelii (Loranthaceae) and patterns of seed rain, by combining radiotelemetry data of mistletoebird Dicaeum hirundinaceum (Dicaeidae) movements with existing gut passage time data. Thirteen adult mistletoebirds had a mean home range of 20 ha, with core activity areas of approximately 1 ha, and birds more often used areas with high levels of mistletoe infestation. The predicted seed shadow of box mistletoe was leptokurtic, with a 12%, 35% and 23% probability of mistletoe seed being deposited 0 m (same host tree), 1–50 m and 51–100 m from the host tree, respectively. Although rare (3% probability), long distance dispersal of mistletoe (>500 m) can occur. The predicted patterns of seed rain were strongly aggregated, with birds dispersing large amounts of seed (>66 000 per ha) in areas with higher mistletoe infestation levels. The movements of mistletoe dispersers will therefore promote mistletoe aggregation at a landscape scale.     

Climate change,chytridiomycosis or condition: an experimental test of amphibian survival

Variation in climatic temperature is frequently cited as playing a powerful role in driving host/pathogen dynamics, and as a consequence future patterns of disease are predicted to change owing to global warming. However, the preponderance of data is correlative and few quantitative tests exist that dissect the relative effects of changing temperature on host and pathogen responses. In this study, we experimentally tested the effect overwintering temperature had on the susceptibility of a vertebrate ectothermic host, the common toad Bufo bufo, to infection and mortality caused by Batrachochytrium dendrobatidis (Bd). We show that a ‘poor’ (warmer) overwintering regime increases the probability of infection, supporting the concept that the dynamics of infection are altered by changing environmental temperature profiles. We also show once established, the proliferation of Bd in the host was better in toadlets that experienced a ‘good’ (colder) winter. We find no relationship between survival and the different overwintering regimes or any consistent deleterious influence of disease on survival. Instead, survival is overwhelmingly predicted by measurements of condition (mass, mass lost over winter) that were not determined by overwintering temperature. We conclude that the survival of a cohort of overwintering toadlets is primarily driven by patterns of growth during the larval period rather than winter temperature or infectious disease.