Isolation and characterization of microsatellite markers in Pterocarpus officinalis Jacq.

The leguminous Pterocarpus officinalis Jacq. is one of the dominant freshwater wetland tree species in the Caribbean basin. Anthromorphic factors threaten to reduce its population. In order to investigate the genetic diversity and structure of this species, we developed eight pairs of primers for nuclear microsatellites. One hundred ninety‐one individuals were analysed within nine Caribbean and continental populations. These loci were polymorphic in all the populations, with four to 20 alleles per locus. Significant Hardy–Weinberg deviation was detected and was interpreted as a result of Wahlund effect. These loci constitute a powerful tool to investigate the genetic patterns within populations of the swamp species P. officinalis.     

Total metal burdens in the freshwater amphipod Gammarus fasciatus: contribution of various body parts and influence of gut contents

1. The distribution of trace metals among body parts of the freshwater amphipod Gammarus fasciatus was investigated and the effect of depuration on the total body burden was assessed.
2. Concentrations of Cr, Fe, Mn and Ni were one order of magnitude higher in the gut contents than in the various body parts, accounting for 40–72% of the total body burdens of amphipods. Depuration caused a decrease of total metal concentrations of 35–88%.
3. Levels of Cd and Cu were higher in the hepatopancreas than in other body parts, whereas levels of Zn were relatively constant throughout the body. For Cd, Cu and Zn, depuration had no effect on mean body concentrations.
4. For Pb, an important fraction of the total body burden was associated with the exoskeleton; depuration caused a decrease in Pb body concentrations.
5. Regression between amphipod metal concentrations before and after depuration is a potential tool for correcting for the effect of gut contents. This correcting method was found to be promising for Cd, Cu, Mn and Zn, with R ² varying between 0.66 and 0.98. It was less efficient for Cr, Fe and Pb, and was useless for Ni.     

Russian Arctic warming and ‘greening’ are closely tracked by tundra shrub willows

Growth in arctic vegetation is generally expected to increase under a warming climate, particularly among deciduous shrubs. We analyzed annual ring growth for an abundant and nearly circumpolar erect willow (Salix lanata L.) from the coastal zone of the northwest Russian Arctic (Nenets Autonomous Okrug). The resulting chronology is strongly related to summer temperature for the period 1942–2005. Remarkably high correlations occur at long distances (>1600 km) across the tundra and taiga zones of West Siberia and Eastern Europe. We also found a clear relationship with photosynthetic activity for upland vegetation at a regional scale for the period 1981–2005, confirming a parallel ‘greening’ trend reported for similarly warming North American portions of the tundra biome. The standardized growth curve suggests a significant increase in shrub willow growth over the last six decades. These findings are in line with field and remote sensing studies that have assigned a strong shrub component to the reported greening signal since the early 1980s. Furthermore, the growth trend agrees with qualitative observations by nomadic Nenets reindeer herders of recent increases in willow size in the region. The quality of the chronology as a climate proxy is exceptional. Given its wide geographic distribution and the ready preservation of wood in permafrost, S. lanata L. has great potential for extended temperature reconstructions in remote areas across the Arctic.     

Functional changes in the control of carbon fluxes after 3 years of increased drought in a Mediterranean evergreen forest?

Our objective was to test how a long‐term increased water limitation affects structural and functional properties of a Mediterranean ecosystem, and how these changes modify the response of the main carbon fluxes to climatic controls. In 2003, a 27% throughfall exclusion experiment was installed in a Quercus ilex L. forest in France. Gross primary production (GPP), ecosystem respiration (R_ECO) and net ecosystem exchange (NEE) were estimated in a control and a dry treatment. Decreasing throughfall decreased GPP by 14% and had a smaller effect on R_ECO (?12%), especially soil respiration R_S (?11%). Interannual variability of GPP (29%) was higher than for R_ECO (12%). Error propagation was used to estimates uncertainties in the NEE fluxes, which ranged from 3% to 10% in the control treatment but up to 167% for NEE in the dry treatment because more steps and data types were involved in the scaling. After 3 years of throughfall exclusion, we found no acclimation of R_S to climatic drivers. Functional properties of the response of R_S to soil water, temperature and rain pulse remained similar in the control and the dry treatments. A diurnal clockwise hysteresis in R_S was probably controlled by canopy photosynthesis with a 3 h lag. The proportion of diurnal variation of respiration due to photosynthesis was similar in all treatments (4–5%). Because of the characteristic of rain in Mediterranean climates, a continuous decrease of water input in these environments have an effect on topsoil water and consequently on R_S only during short periods when rainfall is characterized by infrequent and small events that does not allow the topsoil to reach field capacity and does not allow to dry completely. However, in the longer term, we expect a stronger decrease in R_S in the dry treatment driven by the decrease in GPP.     

El Niño Southern Oscillation and climate trends impact reservoir water quality

Low dissolved oxygen concentration in bottom layers of lakes and reservoirs usually indicates low water quality. In lakes, empirical models predicting anoxia are almost entirely based on the decay of plankton biomass, while in reservoirs recent findings suggest a prominent role of streamflow and load of organic carbon. This suggests a potential link between water quality in reservoirs and climate processes affecting streamflow. Here we support this hypothesis presenting evidence that both interannual climate variability and recent climate change, mainly consisting in a significant increase in potential evapotranspiration in the upstream basin, affected the oxygen content in a Mediterranean reservoir (Sau Reservoir, Spain). Using a 44‐year monthly record, we found strong and consistent signatures of El Niño Southern Oscillation in the inflow and reservoir oxygen content. Spectral and wavelet techniques showed that the El Niño, streamflow, and reservoir oxygen content series oscillated in common periods, which coincided with the main El Niño variability modes. An empirical model explaining the annual oxygen content in the reservoir suggested that a decreasing streamflow trend reduced the oxygen content of the reservoir by about 20%, counteracting remediation measures implemented at the basin upstream the reservoir. Our results provide the first quantitative evidence of climate change effects on reservoir water quality using long‐term instrumental data, and indicate that streamflow should be considered as a key variable in assessing climate change impact on reservoir water quality. These results are especially relevant in regions of the world where reservoirs are abundant and most climate models predict a decrease in runoff during the next decades. Both the expected trends and the sensitivity of reservoir water quality to global interannual climate variability should be considered for a correct management of water resources in the present and to design adaptation policies in the future.     

Characterization of microsatellite markers in the shea tree (Vitellaria paradoxa C. F Gaertn) in Mali

In order to study the genetic diversity and structure in the population of Vitellaria paradoxa, we characterized eight polymorphic microsatellite loci. Primers to amplify these loci were tested on 169 individual trees representing a sample of the population of shea tree in Mali. The loci were all polymorphic with a number of alleles between three to nine and with observed level of heterozygosity ranging from 0.035 to 0.507. These markers will be useful for genetic and ecological studies of this species.     

Isolation and characterization of microsatellite loci in Santalum insulare,Santalaceae

The forest tree Santalum insulare is endemic to the archipelagos of eastern Polynesia and is threatened by important anthropic pressures. In order to investigate the genetic diversity and structure of this species, we developed eight pairs of primers for nuclear microsatellites. One hundred and sixty‐two individuals distributed in 10 islands were analysed. These loci were all polymorphic and displayed three to 15 alleles per locus. Significant Hardy–Weinberg deviation was detected and interpreted as a result of Wahlund effect. These markers constitute an efficient tool in investigating the genetic patterns of S. insulare populations.     

Geological history and oceanography of the Indo‐Malay Archipelago shape the genetic population structure in the false clown anemonefish (Amphiprion ocellaris)

Like many fishes on coral reefs, the false clown anemonefish, Amphiprion ocellaris, has a life history with two different phases: adults are strongly site attached, whereas larvae are planktonic. Therefore, the larvae have the potential to disperse, but the degree of dispersal potential depends primarily on the period of the larval stage, which is only 8–12 days in A. ocellaris. In this study, we investigated the genetic population structure and gene flow in A. ocellaris across the Indo‐Malay Archipelago by analysing a fragment of the mitochondrial control region. Population genetic analysis, using amova , revealed a significant and high overall Φ_ST‐value of 0.241 (P < 0.001), clearly showing limited gene flow. Haplotype network analysis detected eight distinct clades corresponding mainly to different geographical areas, which were most probably separated during sea level low stands in the Pleistocene. The distribution of the clades among the different populations indicated slow partial re‐mixing mainly in the central region of the archipelago. Major surface currents seem to facilitate larval dispersal, indicated by higher connectivity along major surface currents in the region (e.g. Indonesian Throughflow). Four main groups were found by the hierarchical amova within the archipelago. These different genetic lineages should be managed and protected as separate ornamental fishery stocks and resource contributing to the genetic diversity of the area. Regarding the high diversity and the differentiation among areas within the Indo‐Malay Archipelago of A. ocellaris populations, the centre‐of‐origin theory is supported to be the main mechanism by which the high biodiversity evolved in this area.