Taxon interactions control the distributions of cryoconite bacteria colonizing a High Arctic ice cap

Microbial colonization of glacial ice surfaces incurs feedbacks which affect the melting rate of the ice surface. Ecosystems formed as microbe–mineral aggregates termed cryoconite locally reduce ice surface albedo and represent foci of biodiversity and biogeochemical cycling. Consequently, greater understanding the ecological processes in the formation of functional cryoconite ecosystems upon glacier surfaces is sought. Here, we present the first bacterial biogeography of an ice cap, evaluating the respective roles of dispersal, environmental and biotic filtration occurring at local scales in the assembly of cryoconite microbiota. 16S rRNA gene amplicon semiconductor sequencing of cryoconite colonizing a Svalbard ice cap coupled with digital elevation modelling of physical parameters reveals the bacterial community is dominated by a ubiquitous core of generalist taxa, with evidence for a moderate pairwise distance–decay relationship. While geographic position and melt season duration are prominent among environmental predictors of community structure, the core population of taxa appears highly influential in structuring the bacterial community. Taxon co‐occurrence network analysis reveals a highly modular community structured by positive interactions with bottleneck taxa, predominantly Actinobacteria affiliated to isolates from soil humus. In contrast, the filamentous cyanobacterial taxon (assigned to Leptolyngbya/Phormidesmis pristleyi) which dominates the community and binds together granular cryoconite are poorly connected to other taxa. While our study targeted one ice cap, the prominent role of generalist core taxa with close environmental relatives across the global cryosphere indicate discrete roles for cosmopolitan Actinobacteria and Cyanobacteria as respective keystone taxa and ecosystem engineers of cryoconite ecosystems colonizing ice caps.     

Utilizing the Dog Genome in the Search for Novel Candidate Genes Involved in Glioma Development—Genome Wide Association Mapping followed by Targeted Massive Parallel Sequencing Identifies a Strongly Associated Locus

Gliomas are the most common form of malignant primary brain tumors in humans and second most common in dogs, occurring with similar frequencies in both species. Dogs are valuable spontaneous models of human complex diseases including cancers and may provide insight into disease susceptibility and oncogenesis. Several brachycephalic breeds such as Boxer, Bulldog and Boston Terrier have an elevated risk of developing glioma, but others, including Pug and Pekingese, are not at higher risk. To identify glioma-associated genetic susceptibility factors, an across-breed genome-wide association study (GWAS) was performed on 39 dog glioma cases and 141 controls from 25 dog breeds, identifying a genome-wide significant locus on canine chromosome (CFA) 26 (p = 2.8 x 10⁻⁸). Targeted re-sequencing of the 3.4 Mb candidate region was performed, followed by genotyping of the 56 SNVs that best fit the association pattern between the re-sequenced cases and controls. We identified three candidate genes that were highly associated with glioma susceptibility: CAMKK2, P2RX7 and DENR. CAMKK2 showed reduced expression in both canine and human brain tumors, and a non-synonymous variant in P2RX7, previously demonstrated to have a 50% decrease in receptor function, was also associated with disease. Thus, one or more of these genes appear to affect glioma susceptibility.     

The role of water retaining substrata on the photosynthetic response of three drought tolerant phototrophic micro-organisms isolated from a terrestrial habitat

The water prerequisites of two drought tolerant Oscillatoria type cyanobacteria and one green alga were estimated by their ability to accomplish photosynthesis (carbon dioxide fixation) at conditions of subsaturating water supply. Fixation was zero in desiccated samples. Equilibration with solely water-saturated air did not enable any photosynthesis. However, granted properties of the physical environment of the samples could re-establish photosynthesis activity. These properties were elected by chosing membrane filters with different water retention characteristics as supporting substrata for the test samples in the de-and rehydration steps. Rehydration enabled the recovery of photosynthesis of desiccated samples only on the filters with good water retention, the filters with bad water retention were found ineffective. The Oscillatoria strains showed photosynthesis instantaneously and revealed nearly 100% viability. In contrast, rewetted cells of the green alga showed only 35% viability and the recovery of photosynthesis occurred only after 5 h. These differences reflect the natural environmental conditions: cyanobacteria are the first colonizers in the barren sand, whereas green algae can only start to colonize after progressing improvement of the water retention properties brought about by the pioneering cyanobacteria. The results will be discussed in the light of different specific mechanisms available to organisms which endeavour osmotic and matric water stress.Abbreviations DCMU 3(3,4-dichlorophenyl)-1,1-dimethyl-urea - DMF dimethylformamide - PFD photon flux density - TAPS N-tris[hydroxymethyl]methyl-3-amino-propanesulfonic acid     

Effects of light on nitrate-limited Oscillatoria agardhii in chemostat cultures

The effects of the average light irradiance (I) on growth and nitrate uptake kinetics of the cyanobacterium Oscillatoria agardhii, in nitrate-limited chemostat cultures, were studied. Light was nonsaturating for I <9.4 Wm^–2, for all growth rates () studied. However, was throughout limited by the availability of nitrate. Under light-saturating conditions the kinetics of nitrate-limited growth could be adequately described by both the Monod and Droop equations. Under light-non-saturating conditions the internal nitrogen content (Q) was a function of both and I, for which new formulas were derived. The high uptake capacity (V _max) of nitrate-limited cells was independent of , but was significantly increased for cells growing at I <9.4 Wm^–2. The half-saturation constant for nitrate uptake (K _s ^u ) increased with increasing , but was independent of the prevailing light conditions. The effects of light during nitrate-limited growth were associated with the regulation in the nitrogen-containing pigments.The results reported herein have important consequences for the use of Q, K _s ^u and V _max values as indicators of nutrient-deficiency of natural populations.     

Buoyancy regulation in Microcystis aeruginosa grown at different temperatures

Abstract The buoyancy regulation in light-limited cultures of the gas vacuolate cyanobacterium Microcystis aeruginosa AK1 was studied at three temperatures, 15, 20 and 28°C. At the two highest temperatures the organism remained buoyant during the entire light period, whereas at the lowest temperature the buoyancy was reduced at the start of the light period. With this temperature the buoyancy was lost during the light period. This reduced buoyancy was caused by an increase in ballast and a decrease in the gas vesicle volume. Buoyancy changes during a transient state with slow changes in temperatures, i.e., 1°C per day, were caused by changes in polysaccharide ballast. The gas vesicle volume showed no significant change during the transient state.
The maximal photosynthetic rate was dependent upon the growth and incubation temperature, whereas the light harvesting efficiency was independent of the temperature. The results are discussed in an ecological context.     

Pollen- and anther-specific chi promoters from petunia: tandem promoter regulation of the chiA gene.

We have analyzed the spatial and temporal activities of chalcone flavanone isomerase (chi) A and B gene promoters from petunia. To study the tandem promoter regulation of chiA, various chiA promoter fragments were fused with the beta-glucuronidase (GUS) reporter gene. Analysis of transgenic plants containing these chimeric genes provided definitive proof that the chiA coding region is regulated by two distinct promoters (designated PA1 and PA2). We also showed that both promoters can function independently and that the chiA PA1 promoter is expressed in limb (epidermal and parenchyma cells), tube (inner epidermal and parenchyma cells), seed (seed coat, endosperm, and embryo), sepal, leaf, and stem. The use of chiA and chiB promoters in the regulation of anther- and pollen-specific gene expression has been studied. By analyzing transgenic plants containing chimeric genes consisting of chiA and B promoter fragments and the GUS reporter gene, we were able to identify a 0.44-kilobase chiA PA2 promoter fragment that drives pollen-specific gene expression and a 1.75-kilobase chiB PB promoter fragment that confers anther-specific (pollen and tapetum cells) expression to the GUS gene.     

Regulation of phosphate uptake kinetics inOscillatoria agardhii

In order to study phosphate uptake kinetics the cyanobacteriumOscillatoria agardhii was grown in continuous culture under a phosphorus limitation. The affinity of the uptake system reflected in the initial slope of the uptake rate versus external substrate concentration curve (dV/ds) was found to be unaffected by the growth wate.The maximum phosphate uptake rate (V _m ) decreased as the growth rate was increased. Attempts were made to relate the decrease ofV _m to the increase in phosphorus content of the cells that occurred a higher growth rates. Accumulation of phosphate during pulse experiments indeed resulted in a decrease ofV _m . However feedback regulation ofV _m by accumulated phosphorus was found to occur only to a small extent in steady state growing cells. The main part of the regulation of the activity of the phosphate uptake system seemingly is determined by a long term process that is, at least longer than 2 h. The presence of short term feedback inhibition by accumulated phosphorus on the activity of the uptake system provides an explanation of the phenomenon thatOscillatoria agardhii is not able to grow at near _max growth rates under a phosphorus limitation.     

Theoretical considerations on growth kinetics and physiological adaptation of nutrient-limited phytoplankton

In many experimental ecological studies on phytoplankton species the growth response of an organism to the prevailing environmental conditions have been studied. Curves relating specific growth rate () to the external nutrient concentration (S) have been constructed to compare nutrient-limited growth of different species under steady state conditions. Microorganisms adapt their physiology to a certain limitation in order to optimize growth. Therefore the shape of the /S curve is closely related to the way a micoorganism adapts its physiology. To see how physiological adaptation and growth rate are interconnected to each other, both can be related to the internal concentration of the growth-limiting nutrient. How the growth rate is related to the internal nutrient concentration is presented in a mathematical equation.Many phytoplankton species during growth under different nutrient limitations show a linear relationship between and the reciprocal value of the internal nutrient content (= Yield). This was originally observed by Droop. The model presented here gives a theoretical explanation of this phenomenon.     

An algal cyclostat with computer-controlled dynamic light regime

Platycnemis pennipes deposits eggs into plant tissue at or just below the water surface. On a number of different plant species egg deposition rate was found to be similar, while oviposition duration varied. Eggs were not always to be found in the substrate after a female had probed the substrate with her ovipositor. Actual oviposition took place only during longer stays.