Colletotrichum gloeosporioides s.l. associated with Theobroma cacao and other plants in Panama: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes

Colletotrichum interacts with numerous plant species overtly as symptomatic pathogens and cryptically as asymptomatic endophytes. It is not known whether these contrasting ecological modes are optional strategies expressed by individual Colletotrichum species or whether a species' ecology is explicitly pathogenic or endophytic. We explored this question by inferring relationships among 77 C. gloeosporioides s.l. strains isolated from asymptomatic leaves and from anthracnose lesions on leaves and fruits of Theobroma cacao (cacao) and other plants from Panamá. ITS and 5'-tef1 were used to assess diversity and to delineate operational taxonomic units for multilocus phylogenetic analysis. The ITS and 5'-tef1 screens concordantly resolved four strongly supported lineages, clades A-D: Clade A includes the ex type of C. gloeosporioides, clade B includes the ex type ITS sequence of C. boninense, and clades C and D are unidentified. The ITS yielded limited resolution and support within all clades, in particular the C. gloeosporioides clade (A), the focal lineage dealt with in this study. In contrast the 5'-tef1 screen differentiated nine distinctive haplotype subgroups within the C. gloeosporioides clade that were concordant with phylogenetic terminals resolved in a five-locus nuclear phylogeny. Among these were two phylogenetic species associated with symptomatic infections specific to either cacao or mango and five phylogenetic species isolated principally as asymptomatic infections from cacao and other plant hosts. We formally describe two new species, C. tropicale and C. ignotum, that are frequent asymptomatic associates of cacao and other Neotropical plant species, and epitypify C. theobromicola, which is associated with foliar and fruit anthracnose lesions of cacao. Asymptomatic Colletotrichum strains isolated from cacao plants grown in China included six distinct C. gloeosporioides clade taxa, only one of which is known to occur in the Neotropics.     

HO-1 modified mesenchymal stem cells modulate MMPs/TIMPs system and adverse remodeling in infarcted myocardium

The present study was to determine the effects of the heme oxygenase-1 (HO-1) modified mesenchymal stem cells (MSCs) transplantation into acute MI hearts on normalizing the ratio of MMPs/TIMPs and remodeling in infarcted myocardium. HO-1 was transfected into cultured MSCs using an adenoviral vector. 1 × 10⁶ Ad-HO-1-transfected MSCs (HO-1-MSCs) or Ad-Null-transfected MSCs (Null-MSCs) or PBS was respectively injected into rat hearts 1 h intramyocardially after myocardial infarction. The cardiac performance was significantly improved and left ventricular dilatation was significantly attenuated in HO-1-MSCs transplanted hearts. Moreover, a significant increase in microvessel density was observed in HO-1-MSCs transplanted hearts. TIMP2,3 expression in HO-1-MSCs transplanted hearts was significantly increased, and MMP2,9 expression in HO-1-MSCs transplanted hearts was significantly lower than Null-MSCs transplanted and PBS-treated hearts. TIMP1 expression did not vary significantly. Null-MSCs transplantation did not decrease the expression of MMP2,9 significantly compared with PBS-treated hearts. The ratio of TIMP2 to MMP2, and TIMP3 to MMP9 in cell-grafted hearts was increased significantly. HO-1-MSCs transplantation normalize the ratio of MMPs/TIMPs, contributing to the reversion of myocardial extracellular remodeling.     

Open-label add-on treatment trial of minocycline in fragile X syndrome

Background  

Fragile X syndrome (FXS) is a disorder characterized by a variety of disabilities, including cognitive deficits, attention-deficit/hyperactivity disorder, autism, and other socio-emotional problems. It is hypothesized that the absence of the fragile X mental retardation protein (FMRP) leads to higher levels of matrix metallo-proteinase-9 activity (MMP-9) in the brain. Minocycline inhibits MMP-9 activity, and alleviates behavioural and synapse abnormalities in fmr1 knockout mice, an established model for FXS. This open-label add-on pilot trial was conducted to evaluate safety and efficacy of minocycline in treating behavioural abnormalities that occur in humans with FXS.     

Modeling the effects of nitrogen deposition on carbon budget in two temperate forests

The NO_x input terrestrial ecosystems are increasing significantly induced by human activities, yet the understanding of the responses of carbon cycle to nitrogen deposition is still poor. The northern temperate forest ecosystems have seen the greatest changes in nitrogen inputs from atmosphere. It is necessary for us to understand how the carbon cycle would change under the nitrogen addition in temperate forests, as an important carbon sink. In this study, we present a biogeochemical process model, CEVSA2, and use this model to elucidate the key processes that may strongly influence the carbon budget response to anthropogenic nitrogen addition. The CEVSA2 model has included the effect of nitrogen on photosynthesis, carbon allocation, soil organic matter decomposition, etc. Our simulations show nitrogen addition stimulates the photosynthesis, net carbon sequestration, carbon accumulation in vegetation and soil, by contrary, the low level of nitrogen addition decreases the heterotrophical and total respiration. The long-term chronic nitrogen addition experiments show that the low and high level nitrogen addition would reduce the carbon sequestration and accumulation. The model failed to simulate the effect of nitrogen addition on plant mortality, the de-coupling of nitrogen and photosynthesis when nitrogen saturates. In addition, the responses of soil respiration to nitrogen deposition involve so many complex biochemical processes; however, we have little knowledge about them. Sequentially, there is large uncertainty of model simulation on the effect of nitrogen deposition on soil respiration. With increasing rates of anthropogenic nitrogen deposition, there is a strong need to understand links between nitrogen inputs and carbon cycle.     

Characterization and In Vivo Pharmacological Rescue of a Wnt2-Gata6 Pathway Required for Cardiac Inflow Tract Development

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Highlights? Wnt2 is required for atrial and inflow tract morphogenesis ? Wnt2 regulates expansion of secondary heart field progenitors ? Defects in Wnt2^?/? mutants can be rescued using Wnt signaling agonists ? Wnt2 cooperates with Gata6 to regulate cardiac inflow tract development     

Prediction of tyrosine sulfation with mRMR feature selection and analysis

Protein tyrosine sulfation is a ubiquitous post-translational modification (PTM) of secreted and transmembrane proteins that pass through the Golgi apparatus. In this study, we developed a new method for protein tyrosine sulfation prediction based on a nearest neighbor algorithm with the maximum relevance minimum redundancy (mRMR) method followed by incremental feature selection (IFS). We incorporated features of sequence conservation, residual disorder, and amino acid factor, 229 features in total, to predict tyrosine sulfation sites. From these 229 features, 145 features were selected and deemed as the optimized features for the prediction. The prediction model achieved a prediction accuracy of 90.01% using the optimal 145-feature set. Feature analysis showed that conservation, disorder, and physicochemical/biochemical properties of amino acids all contributed to the sulfation process. Site-specific feature analysis showed that the features derived from its surrounding sites contributed profoundly to sulfation site determination in addition to features derived from the sulfation site itself. The detailed feature analysis in this paper might help understand more of the sulfation mechanism and guide the related experimental validation.     

Identification of novel 14-3-3ζ interacting proteins by quantitative immunoprecipitation combined with knockdown (QUICK)

The family of 14-3-3 proteins has emerged as critical regulators of diverse cellular responses under both physiological and pathological conditions. To gain insight into the molecular action of 14-3-3ζ in multiple myeloma (MM), we performed a systematic proteomic analysis of 14-3-3ζ-associated proteins. This analysis, recently developed by Matthias Mann, termed quantitative immunoprecipitation combined with knockdown (QUICK), integrates RNAi, SILAC, immunoprecipitation, and quantitative MS technologies. Quantitative mass spectrometry analysis allowed us to distinguish 14-3-3ζ-interacting proteins from background proteins, resulting in the identification of 292 proteins in total with 95 novel interactions. Three 14-3-3ζ-interacting proteins-BAX, HSP70, and BAG3-were further confirmed by reciprocal coimmunoprecipitations and colocalization analysis. Our results therefore not only uncover a large number of novel 14-3-3ζ-associated proteins that possess a variety of cellular functions, but also provide new research directions for the study of the functions of 14-3-3ζ. This study also demonstrated that QUICK is a useful approach to detect specific protein-protein interactions with very high confidence and may have a wide range of applications in the investigation of protein complex interaction networks.     

硅藻鼠科(哺乳纲,啮齿目)与亚洲中始新世啮齿类的双脊齿(英文)

亚洲特有的啮齿类硅藻鼠科自渐新世以来分布于东亚和南亚。现生硅藻鼠类的分布只限于老挝的喀斯特地区。就目前所知,这些具有豪猪型头骨-松鼠型下颌的啮齿类的颊齿都是不同程度的横向双脊齿。时代最早的硅藻鼠类产于巴基斯坦渐新世地层中,其颊齿的双脊齿构造上仍保留齿尖残迹,基本符合双脊齿型牙齿结构。至渐新世末期,硅藻鼠科的牙齿出现分化。中新世及以后硅藻鼠类的化石记录相对较少。分子生物学证据将硅藻鼠类归入Ctenohystrica,这种归属也从始新世梳趾鼠类的臼齿形态上得到一定的支持。除此之外,有关硅藻鼠类的起源问题几乎一无所知。亚洲中始新世的Hydentomys臼齿表现出轻微的双脊型,然而其他方面却与硅藻鼠类不同。另一个具双脊齿的啮齿类Dolosimus(新属)产于江苏中始新世,其具有更为发育的双脊齿,特别是臼齿型下牙。新属的不完整记录及其形态不能解决如下问题:它是否与后来出现的像硅藻鼠类和跃兔类这些具有明显双脊齿型颊齿的啮齿类有亲缘关系,或者只是这种形态发育中没有留下后继者的早期试验品。     

人类巨细胞病毒编码US28受体拮抗性多肽的筛选鉴定及体外活性研究

立足US28的广谱趋化因子结合活性,寻找拮抗剂多肽的先导物．通过预测US28的结合模拟位设计多肽序列,合成相关多肽,再利用自建的25种趋化因子随机构成的噬菌体12肽库筛选结合模拟位,竞争性ELISA方法验证,从而获得30个阳性克隆,测序并推导氨基酸序列,得到7种序列：GSESLNAHCALW、EIDGFNAHCALL、VIARLNAHCALR、ATECLNAHCALW、VIESLNAHCALW、DNGSINAHCALL及VKKTLNAHCALR．所有序列富含疏水氨基酸,其中8个克隆有LNAHCAL保守序列．采用趋化抑制实验检测多肽对生理性趋化因子引起的细胞迁移活性的影响,流式细胞仪检测细胞内钙离子浓度变化．结果表明,利用人源趋化因子序列构建肽库并筛选有效序列的方法取得成功,筛选出的阳性克隆保守序列LNAHCAL可以模拟Human MIP-1β与US28 N端的结合位,从而与合成多肽H22结合,多肽H22可以阻断受体结合生理性趋化因子形成的趋化作用,本身不引起趋化运动,不影响胞内信号转导和细胞自然活性,具有广谱趋化因子拮抗剂的可能性．     

渤海淡水存留时间分析

利用渤海蒸发量、降水量、入海径流量、渤海及黄海盐度数据,基于淡水比例方法估算了渤海的淡水存留时间,并设计敏感性实验,定量分析了渤海淡水通量对渤海淡水存留时间的影响。结果表明,渤海年平均(1965—1980、1986—1992、1994、1996年)淡水存留时间为2.6年,并呈现弱上升的趋势。20世纪80年代的淡水存留时间(4.6年)与20世纪60年代(3.0年)相比,增加了近50%。渤海淡水存留时间随淡水输入的增加而缩短。与净降水量(降水量与蒸发量之差)相比,渤海淡水存留时间对入海径流量变化更敏感,因而流域调水的环境规划应予以充分关注。