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31.
2'',3''-Dideoxy-3'' aminonucleoside 5''-triphosphates are the terminators of DNA synthesis catalyzed by DNA polymerases. 总被引:3,自引:2,他引:1 下载免费PDF全文
Z G Chidgeavadze R S Beabealashvilli A M Atrazhev M K Kukhanova A V Azhayev A A Krayevsky 《Nucleic acids research》1984,12(3):1671-1686
It is shown that 2',3'-dideoxy-3'-aminonucleoside 5'-triphosphates with adenine, guanine, cytosine and thymine bases are effective inhibitors of DNA polymerase I, calf thymus DNA polymerase alpha and rat liver DNA polymerase beta. The effect of the above-mentioned compounds is markedly higher than corresponding action of the well-known DNA synthesis inhibitors arabinonucleoside 5'-triphosphates and 2',3'-dideoxynucleoside 5'-triphosphates. 2',3'-dideoxy-3'-aminonucleoside 5'-monophosphate residues incorporate into the 3'-terminus of the primer and terminate the DNA chain elongation. The possibility of using 2',3'-dideoxy-3'-aminonucleoside 5'-triphosphates as terminators for DNA sequencing by the polymerization method is demonstrated. 相似文献
32.
Maxim Jasko Anastasiya Khandazhinskaya Ludmila Alexandrova Elena Shirokova Alexander Ivanov Marina Kukhanova 《Nucleosides, nucleotides & nucleic acids》2013,32(4):323-334
Novel triphosphate derivatives bearing bulky or small groups at α-position attached to the triphosphate residue through linkers of different structures and lengths were synthesized and studied as substrates toward terminal deoxynucleotidyltransferase. The substrate efficacy depends on the structure of substituents, linker length, and nature of metal activator. The replacement of hydrophobic groups by small substituents decreased the substrate efficacy by about 20 times in respect to hydrophobic residues. The dependence on metal activator is the following: Co2+ > Mn2+ >> Mg2+. The model of interaction of alkyl triphosphates with linkers of different lengths bearing TdT active site is presented. 相似文献
33.
A Sghaier-Ayadi M Feki I Bezrati-Ben Ayed O Abene MK Ben Fredj K Kaabachi A Chaouachi 《Biology of sport / Institute of Sport》2015,32(4):281-287
Recent reports suggest that hypovitaminosis D in athletes is as common as in the general population. This study was devised to examine vitamin D status and determinants of deficiency in athletes living in a sunny country (Tunisia). One hundred and fifty national elite athletes, training outdoors (n = 83) or indoors (n = 67), were enrolled from January to February 2012. Plasma 25-hydroxyvitamin D was measured by radioimmunoassay. Concentrations were between 50 and 75 nmol · l-1 in 21.3% of participants, between 25 and 50 nmol · l-1 in 55.3% of participants and <25 nmol · l-1 in 14.7% of participants. The concentrations were significantly lower in indoor athletes than outdoor athletes (36.2±19.0 nmol · l-1 vs. 49.1±19.2 nmol · l-1; p < 0.001). In multivariate analysis, vitamin D deficiency (25-hydroxyvitamin D <50 nmol · l-1) was associated with indoor sports [multi-adjusted odds ratio (95% confidence interval), 5.03 (1.64-15.4); p = 0.005], female gender [3.72 (1.44-9.65); p = 0.007] and age < 18 years [2.40 (1.01-5.85); p = 0.05]. Athletes living in sun-rich environments are exposed to a high risk of vitamin D inadequacy. Given the importance of vitamin D in health and athletic ability, targeting sufficient levels of plasma 25-hydroxyvitamin D in athletes is well justified. 相似文献
34.
35.
Yanvarev DV Shirokova EA Astapova MV Shram VI Kukhanova MK Skoblov YS 《Nucleosides, nucleotides & nucleic acids》2007,26(8-9):897-900
An effective synthesis of 5'-carbamoylphosphonyl-[6-3H]-AZT was developed from [6-3H]-AZT.For the synthesized compound, chemical and enzymatic stability were determined and its penetration across HL-60 cell membranes was studied. 相似文献
36.
Deev SL Yasko MV Karpenko IL Korovina AN Khandazhinskaya AL Andronova VL Galegov GA Shestakova TS Ulomskii EN Rusinov VL Chupakhin ON Kukhanova MK 《Bioorganic chemistry》2010,38(6):265-270
A new class of inhibitors of herpes simplex virus replication was found. The compounds under study are derived from condensed 1,2,4-triazolo[5,1-c][1,2,4]triazines and 1,2,4-triazolo[1,5-a]pyrimidines, structural analogues of natural nucleic bases. Antiherpetic activity and cytotoxicity of the compounds were studied. The corresponding triphosphates of several active compounds were prepared and tested as inhibitors of DNA synthesis catalyzed by herpes simplex virus polymerase. The potential mechanism of their action is blocking of DNA dependent DNA polymerase, a key enzyme of viral replication. 相似文献
37.
Guma MK Abdeldaim Kristoffer Strålin Jens Korsgaard Jonas Blomberg Christina Welinder-Olsson Björn Herrmann 《BMC microbiology》2010,10(1):310
Background
Streptococcus pneumoniae and Haemophilus influenzae cause pneumonia and as Neisseria meningitidis they are important agents of meningitis. Although several PCR methods have been described for these bacteria the specificity is an underestimated problem. Here we present a quantitative multiplex real-time PCR (qmPCR) for detection of S. pneumoniae (9802 gene fragment), H. influenzae (omp P6 gene) and N. meningitidis (ctrA gene). The method was evaluated on bronchoalveolar lavage (BAL) samples from 156 adults with lower respiratory tract infection (LRTI) and 31 controls, and on 87 cerebrospinal fluid (CSF) samples from meningitis patients. 相似文献38.
Ivanov AV Korovina AN Tunitskaya VL Kostyuk DA Rechinsky VO Kukhanova MK Kochetkov SN 《Protein expression and purification》2006,48(1):14-23
The plasmid pET-21d-2c-5BDelta55 effectively expressing a C-terminally truncated form (NS5BDelta55) of the hepatitis C virus (HCV) RNA-dependent RNA polymerase (RdRp) was constructed. It was derived from pET-21d-5BDelta55 plasmid and contained six mutations in the ATG-start codon region and an additional cistron upstream the target gene. The C-terminally His-tagged NS5BDelta55 protein was expressed in Rosetta(DE3) Escherichia coli strain bearing an additional pRARE plasmid encoding extra copies of rare tRNAs. The yield of the target enzyme exceeded by a factor of 29 the yield of NS5BDelta55 protein expressed from the parental pET-21d-5BDelta55 plasmid (5 mg/L). The increase in the protein yield could be explained by facilitated protein translation initiation, resulted from disruption of the stable secondary mRNA structure. The pET-21d-2c-5BDelta55 plasmid yielded one third amount of the protein when expressed in BL-21(DE3) strain, indicating that the pRARE plasmid is required for a high-level expression of NS5BDelta55 protein. The 29-fold enhancement of the protein yield was accompanied by only a 2.5-fold increase of the corresponding mRNA level. The expression of another HCV NS5A protein His-tagged at the C-terminus in the developed system yielded a similar amount of the protein (4 mg/L), whereas its N-terminally His-tagged counterpart was obtained in a 30 mg/L yield. The NS5A protein purified under denaturing conditions and renatured in solution inhibited the HCV RdRp and was a substrate for human casein kinase II. 相似文献
39.
Ias'ko MV Ulanova NIu Andronova VL Ivanov AV Karpenko IL Kukhanova MK Galegov GA Skoblov IuS 《Bioorganicheskaia khimiia》2004,30(6):599-606
Alkyl esters of acyclovir phosphite, alkoxycarbonylphosphonate, ethoxycarbonylmethylphosphonate, and aminocarbonylphosphonate were synthesized. Most of them were shown to inhibit the replication of type 1 herpes simplex virus in Vero cell culture. The stability in phosphate buffer and human blood serum was studied for several of the derivatives. A correlation between the stability and antiviral activity of the synthesized compounds is discussed. The English version of the paper: Russian Journal of Bioorganic Chemistry, 2004, vol. 30, no. 6; see also http://www.maik.ru. 相似文献
40.
Using simulated data, we compared five methods of phylogenetic tree
estimation: parsimony, compatibility, maximum likelihood, Fitch-
Margoliash, and neighbor joining. For each combination of substitution
rates and sequence length, 100 data sets were generated for each of 50
trees, for a total of 5,000 replications per condition. Accuracy was
measured by two measures of the distance between the true tree and the
estimate of the tree, one measure sensitive to accuracy of branch lengths
and the other not. The distance-matrix methods (Fitch- Margoliash and
neighbor joining) performed best when they were constrained from estimating
negative branch lengths; all comparisons with other methods used this
constraint. Parsimony and compatibility had similar results, with
compatibility generally inferior; Fitch- Margoliash and neighbor joining
had similar results, with neighbor joining generally slightly inferior.
Maximum likelihood was the most successful method overall, although for
short sequences Fitch- Margoliash and neighbor joining were sometimes
better. Bias of the estimates was inferred by measuring whether the
independent estimates of a tree for different data sets were closer to the
true tree than to each other. Parsimony and compatibility had particular
difficulty with inaccuracy and bias when substitution rates varied among
different branches. When rates of evolution varied among different sites,
all methods showed signs of inaccuracy and bias.
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