Comparison of indirect and direct in-situ polymerase chain reaction in cell preparations and tissue sections

Different approaches to the in-situ polymerase chain reaction (in-situ PCR) were compared in the detection and in-situ localization of chromosomal translocations (t14; 18) immunoglobulin gene rearrangements and viral DNA (cytomegalovirus, hepatitis B-virus) in cell suspensions, cytospins and tissue sections. Single and multiple primer pairs were compared in the amplification step of indirect in-situ PCR and long genomic probes or internal oligonucleotide probes in the subsequent in-situ hybridization (ISH). For direct in-situ PCR, in which amplification products were directly labeled with digoxigen-in-11-dUTP during PCR and detected immunohistochemically, only single primer pairs were used for amplification. In-situ PCR yielded best results in the cell suspensions and worked less efficiently in cytospins or tissue sections. Quantification of the results obtained in artificial cell mixtures yielded only an approximate correlation between the number of expected and observed positive cells. The specificity of the results was greater with indirect in-situ PCR than direct in-situ PCR, where false positive results were frequent. Successful indirect in-situ PCR in tissue sections required the use of multiple primer pairs for amplification and genomic probes for detection by ISH. False positive results in direct in-situ PCR were caused by primer-independent, but DNA polymeraseand cycling-dependent incorporation of digoxigenin-labeled nucleotides into cellular DNA, possibly related to DNA repair and/or internal priming. Non-specific results were most marked in tissue sections and were much less frequent in cell suspensions. In-situ PCR includes a number of different techniques, which are not equally applicable to different starting materials. Accurate interpretation of the results requires vigorous controls.     

Preparation of radiolabeled GM2 and GA2 gangliosides.

GM2 and GA2 gangliosides from the brain of a patient who died of Sandhoff's disease were purified by solvent partition, silicic acid and silica gel column chromatography, and silica gel preparative thin-layer chromatography. They were tritiated in the terminal N-acetylgalactosamine residue using galactose oxidase and sodium [3H]borohydride with the inclusion of catalase and peroxidase into the oxidation reaction. The specific activities were 4.62 X 10(8) dpm/mumol of GM2 ganglioside and 5.54 X 40(7) dpm/mumol of GA2 ganglioside. The addition of catalase and peroxidase to the tritiation procedure is recommended.     

Effects of cold on activity and exploration by wild house mice in a residential maze

Summary Wild house mice,Mus musculus, were bred in environments kept at 23 °C (warm-reared) or 3 °C (cold-reared). Males of the fourth generation in each condition were observed for 4 days in a residential maze with a central nest box and four arms radiating from it. One maze arm contained food, one contained water, and two were empty until Day 4, when one had soft (balsa) wood. Mice of each type were run in a maze at each temperature.Mice of all classes responded to the novel environment of the maze with a high rate of visiting the arms on Day 1. The novel presence of balsa wood also provoked extra visits to the arm that contained it, and a longer stay in that arm on Day 4 than on Day 3. Visits to the arms were fewer in the cold than in the warm, and time spent in the arms was less.Cold-reared mice in the cold environment spent more time outside the nest on Day 1, that is, were more responsive to novelty than were the warmreared. Hence for the cold-reared mice the competitive balance between exploring and energy conservation was altered. This difference, we suggest, is an aspect of cold-adaptation.These experiments were done in part while JLW held an award from the National Science Foundation under the US/Australia Agreement for Scientific Cooperation. We are also grateful to Rhondda G. Dickson for help with the statistical analysis.     

Auffällige ER-Konfigurationen in Protein-Polysaccharidschleim-sezernierenden pflanzlichen Drüsen

In the ovary of Aptenia cordifolia and Platythyra haeckeliana placentary papillae produce a slime containing polysaccharides and proteins. These papillae show two types of conspicuous vacuoles enclosed by rough ER cisternae and complexes of concentrically arranged rough ER. The enclosed vacuoles probably play an important role in the accumulation of the polysaccharide-protein slime. In the case of storage vesicles (first vacuole type) derivates of the Golgi apparatus are enclosed by ER. In other instances (second vacuole type) ER cisternae which have lost their membrane-bound ribosomes seem to delimit protoplasmic regions free of organelles.

     

Influence of cationic triphenylmethane dyes upon DNA polymerization and product hydrolysis by Escherichia coli polymerase I.

The cationic triphenylmethane dyes crystal violet, methyl green, and malachite green inhibited DNA synthesis catalyzed by Escherichia coli B polymerase I (polymerase I). Lower concentrations of the dyes inhibited DNA replication as a direct function of the proportion of AT to GC in the DNA of Clostridium perfringens, Escherichia coli, and Micrococcus lysodeikticus. When the intercalant proflavin was employed, the GC-rich micrococcal DNA was most severely inhibited. In addition, both the triphenylmethanes and proflavin inhibited product hydrolysis catalyzed by polymerase I.     

Nutritional and biochemical characterization of Methanospirillum hungatii.

To ascertain its physiological similarity to other methanogenic bacteria, Methanospirillum hungatii, the type species of the genus, was characterized nutritionally and biochemically. Good growth occurred in a medium consisting of mineral salts, cysteine sulfide reducing buffer, and an H2-CO2 (80:20) atmosphere. Addition of amino acids and B vitamins stimulated growth. Cell-free extracts contained methylcobalamin-coenzyme M methyltransferase, methylreductase, and formate hydrogenlyase. Cells contained coenzyme M and coenzyme F420. Coenzyme F420 was required for formate hydrogenlyase activity. Coenzyme F420 purified from M. hungatii had identical properties to that purified from species of Methanobacterium. The physiological basis of the family Methanobacteriaceae is strengthened by these findings.     

Malate dehydrogenase: a higher molecular weight form produced by freeze-thaw treatment of pig heart supernatant enzyme.

Attempts to produce hybrids of pig heart supernatant and mitochondrial malate dehydrogenase with the use of guanidine hydrochloride, acid treatment, and freezethaw techniques have been unsuccessful. However, the freeze-thaw technique produced a catalytically active higher molecular weight form of supernatant malate dehydrogenase in the absence or presence of mitochondrial enzyme. The higher molecular weight of this artifact was established by gel filtration and gel electrophoresis criteria. The specific activity of the artifactual form of the enzyme appears to be close to that of native supernatant malate dehydrogenase.     

Spontaneous neurite outgrowth and vasoactive intestinal peptide-Iike immunoreactivity of cultures of human paraganglioma cells from the glomus jugulare

Summary The chief cells of paraganglionic tissues have morphological and functional similarities to adrenal chromaffin cells, and both cell types are derived from the neural crest. In the present investigation cells from two glomus jugulare paragangliomas were studied in culture. Approximately 50% of the cells from one tumor, and 7% from the other spontaneously formed neurite-like processes. Numerous granular and agranular synaptic-like vesicles also appeared in the process-forming cells. In contrast to findings with normal and neoplastic adrenal chromaffin cells, addition of nerve growth factor (NGF) to the culture medium had no major effects on proportion of cells with processes. Dexamethasone caused only a small decrease in process length. Culturing of the tumors also appeared to promote production of material with VIP-like immunoreactivity. It is concluded that the phenotype of paraganglioma as well as pheochromocytoma cells may be altered in vitro. Responsiveness to specific factors such as NGF or steroids, however, may vary for related tumor cell types in different anatomic locations.     

New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere.

The sensitivity of the requirement of Methanobacterium ruminantium strain M1 to a new coenzyme, 2-mercaptoethanesulfonic acid (HS-CoM) was examined by use of new techniques that were developed for rapid and efficient handling of large numbers of cultures of methanogenic bacteria. The system uses sealed tubes that contain a gas mixture of 80% hydrogen and 20% carbon dioxide under a pressure of 2 to 3 atm. This modification of the Hungate technique reduces variability among replicate cultures and simplifies the dispensing, sterilization, and storage of liquid media as well as the transfer and maintenance of methanogenic bacteria. Results indicate a limit of sensitivity of the assay at 5 nM HS-CoM, with half-maximal growth at 25 nM HS-CoM. Coenzyme activity could be replaced by 2,2'-dithiodiethanesulfonic acid at a half-molar equivalent of the HS-CoM concentration, or by 2-(methylthio)ethanesulfonic acid on an equimolar basis. These data reveal a very sensitive and precise requirement for HS-CoM in the nutrition of this fastidious anaerobe.