Phosphorus in the sediment of the Loosdrecht lakes and its implications for lake restoration perspectives

In 1984 the external phosphorus load of the shallow eutrophic Loosdrecht lakes was reduced from 3.3 to 1.0 mg m^–2 d^–1. The effect of phosphorus release from the sediment on lake restoration was investigated. Diffusive release under aerobic conditions (20 °C) decreased from 1 mg m^–2 d^–1 in 1984 to 0.3 mg m^–2 d^–1 in 1990. The generation of inorganic phosphorus due to mineralization during summer equals 3 mg m^–2 d^–1, which is much higher than the measured rate of diffusive release. Despite that, the phosphorus release is hardly stimulated by anaerobic conditions, which indicates that only a small amount of phosphorus is adsorbed by ferric iron in the top sediment layer. This apparent discrepancy is probably caused by the uptake of inorganic phosphorus uptake during resuspension and the loss of inorganic phosphorus with downward seepage.The estimated removal of phosphorus due to downward seepage of 0.8 mg m^–2 d^–1 agrees well with the average phosphorus retention in the lake. This indicates that sediment burial and diagenesis are unimportant mechanisms for withdrawing phosphorus from the nutrient cycle.Between 1982 and 1991 the total phosphorus content of the upper 2 cm of the sediment decreased from 0.94 to 0.60 g kg^–1 DW. At present, about 20% of total phosphorus in this layer is potentially bioavailable, but largely incorporated in easily degradable organic matter. This pool is much smaller in deeper layers. Based on the estimated and measured rates and pool sizes, the annual average phosphorus cycle in the lakes was modelled to evaluate the effects of various restoration measures. The main predictions of the model are: 1) further reduction of the external load may cause a gradual decrease of the total phosphorus concentration in the lake water; 2) dredging and iron addition, without reduction of the external load, may give a rapid improvement followed by a slow return to the present situation; and 3) reduction of the external load, combined with a cut off of downward seepage will not improve the water quality.     

Isolation and characterization of mutants impaired in the selective degradation of peroxisomes in the yeast Hansenula polymorpha.

We have isolated a collection of peroxisome degradation-deficient (Pdd-) mutants of the yeast Hansenula polymorpha which are impaired in the selective autophagy of alcohol oxidase-containing peroxisomes. Two genes, designated PDD1 and PDD2, have been identified by complementation and linkage analyses. In both mutant strains, the glucose-induced proteolytic turnover of peroxisomes is fully prevented. The pdd1 and pdd2 mutant phenotypes were caused by recessive monogenic mutations. Mutations mapped in the PDD1 gene appeared to affect the initial step of peroxisome degradation, namely, sequestration of the organelle to be degraded by membrane multilayers. Thus, Pdd1p may be involved in the initial signalling events which determine which peroxisome will be degraded. The product of the PDD2 gene appeared to be essential for mediating the second step in selective peroxisome degradation, namely, fusion and subsequent uptake of the sequestered organelles into the vacuole. pdd1 and pdd2 mutations showed genetic interactions which suggested that the corresponding gene products may physically or functionally interact with each other.     

Chromatographic analysis of the enantiomers of ifosfamide and some of its metabolites in plasma and urine

The enantiomers of the cytostatic drug ifosfamide and the two metabolites 2- and 3-dechloroethylifosfamide were isolated from plasma and urine by liquid-liquid extraction with ethyl acetate, resolved on a Chirasil- -val gas chromatographic column and detected by a nitrogen-phosphorus-selective flame ionisation detector. Resolution of the racemic compounds for identification purposes was also accomplished with high-performance liquid chromatography on a chiral column. The validated gas chromatographic method was suitable to determine the total concentrations and the enantiomeric composition of ifosfamide and its dechloroethylated metabolites in plasma and urine samples from treated patients. Some metabolic preferences in the metabolism of ifosfamide were found.     

Conditional probability analysis for a domain model of Ca(2+)-inactivation of Ca2+ channels.

The domain model of Ca2+ inactivation of Ca2+ channels, which has been used to explain rapid inactivation of whole cell Ca2+ currents in pancreatic beta cells, is applied to single-time and conditional open probability measurements on guinea pig ventricular myocyte Ca2+ channels. These two measurements greatly constrain the choice of kinetic constants in the model. Calculations with the model provide a simple quantitative explanation of recent experimental results, including a slow increase in the inactivation rate.     

Two roles of Ca2+ in agonist stimulated Ca2+ oscillations.

We propose a mechanism for agonist-stimulated Ca2+ oscillations that involves two roles for cytosolic Ca2+: (a) inhibition of inositol-1,4,5-trisphosphate (IP3) stimulated Ca2+ release from the endoplasmic reticulum (ER) and (b) stimulation of the production of IP3 through its action on phospholipase C (PLC), via a Gq protein related mechanism. Relying on quantitative experiments by Parker, I., and I. Ivorra (1990. Proc. Natl. Acad. Sci. USA. 87:260-264) on the inhibition of Ca2+ release from the ER using caged-IP3, we develop a kinetic model of inhibition that allows us to simulate closely their experiments. The model assumes that the ER IP3 receptor is a tetramer of independent subunits that can bind both Ca2+ and IP3. Upon incorporation of the action of Ca2+ on PLC that leads to production of IP3, we observe in-phase-oscillations of Ca2+ and IP3 at intermediate values of agonist stimulation. The oscillations occur on a time scale of 10-20 s, which is comparable to the time scale for inhibition in Xenopus oocytes. Analysis of the mechanism shows that Ca(2+)-inhibition of IP3-stimulated Ca2+ release from the ER is an essential step in the mechanism. We also find that the effect of Ca2+ on PLC can lead to an indirect increase of cytosolic Ca2+, superficially resembling "Ca(2+)-induced Ca(2+)-release." The mechanism that we propose appears to be consistent with recent experiments on REF52 cells by Harootunian, A. T., J. P. Y. Kao, S. Paranjape, and R. Y. Tsien. (1991. Science [Wash. DC]. 251:75-78.) and we propose additional experiments to help test its underlying assumptions.     

Nonequilibrium chemical potentials and free energies for enzyme-catalyzed reactions

Using the statistical theory of nonequilibrium thermodynamics we explore the nature of nonequilibrium corrections to chemical potentials in simple enzyme-catalyzed reactions. The statistical definition of the chemical potential, which pertains to systems that are at stable steady states, is applied to the Michaelis-Menten reaction scheme in a cellular-sized compartment that communicates with out-side reservoirs. Calculations based on the kinetic parameters for hexokinase and triose phosphate isomerase show that substantial corrections to the chemical potential of product (the order of 25 mV) are possible if the reaction is sufficiently far from equilibrium. The dependence of the corrections to the chemical potentials on the size of the cellular compartment are explored, and the relevance of the corrections for understanding the thermodynamics of metabolites is discussed.     

Kinetics and thermodynamics of metabolite transfer between enzymes

Based on experimental evidence put forward by Bernhard and others, we explore the kinetics and thermodynamics of the proposed direct and diffusional transfer mechanisms of enzymatic catalysis. Data for transient transfer of NADH between two cognate dehydrogenases (E1 and E2) are combined with steady-state catalytic data to quantify the kinetics of the two transfer mechanisms. In order to rationalize these data we find: (1) that the rate constants for direct transfer of NADH from E1-NADH to E2 must be much larger when a reactive metabolite, M, is bound to E2, (2) that a significant amount of noncatalytic complex E1-E2-M must be formed, and (3) that dissociation constants of the order of 1 microM are required for the ternary complexes involved in direct transfer (E1-NADH-E2). Using values of rate parameters similar to those assumed in these calculations, we proceed to explore the kinetics and thermodynamics of a hypothetical two-enzyme segment of a metabolic pathway that involves direct and diffusional metabolite transfer operating in parallel. Under steady-state conditions, we conclude from our calculations: (1) that the flux through the direct transfer branch would be comparable to or greater than that through the diffusional transfer branch under physiological conditions, (2) that activity effects resulting from physiological concentrations of inert protein enhance the predominance of the direct transfer flux, (3) that significant concentrations of ternary transfer complexes are formed, (4) that changes in the catalytic mechanism involving the ternary complex have little effect, (5) that direct transfer significantly moderates the reduction in metabolic flux caused by protein complexation, and (6) that direct transfer greatly alters the thermodynamics and kinetics of our hypothetical pathways. We conclude, therefore, that direct transfer--when it exists--would have important kinetic, thermodynamic, and physiological consequences in vivo.