Winter CO2 CH4 and N2O fluxes on some natural and drained boreal peatlands

CO₂ and CH₄ fluxes during the winter were measured at natural and drained bog and fen sites in eastern Finland using both the closed chamber method and calculations of gas diffusion along a concentration gradient through the snowpack. The snow diffusion results were compared with those obtained by chamber, but the winter flux estimates were derived from chamber data only. CH₄ emissions from a poor bog were lower than those from an oligotrophic fen, while both CO₂ and CH₄ fluxes were higher in theCarex rostrata- occupied marginal (lagg) area of the fen than in the slightly less fertile centre. Average estimated winter CO₂-C losses from virgin and drained forested peatlands were 41 and 68 g CO₂-C m^–2, respectively, accounting for 23 and 21% of the annual total CO₂ release from the peat. The mean release of CH₄-C was 1.0 g in natural bogs and 3.4 g m^–2 in fens, giving rise to winter emissions averaging to 22% of the annual emission from the bogs and 10% of that from the fens. These wintertime carbon gas losses in Finnish natural peatlands were even greater than reported average long-term annual C accumulation values (less than 25g C m^–2). The narrow range of 10–30% of the proportion of winter CO₂ and CH₄ emissions from annual emissions found in Finnish peatlands suggest that a wider generalization in the boreal zone is possible. Drained forested bogs emitted 0.3 g CH₄-C m^–2 on the average, while the effectively drained fens consumed an average of 0.01 g CH₄-C m^–2. Reason for the low CH₄. efflux or net oxidation in drained peatlands probably lies in low substrate supply and thus low CH₄ production in the anoxic deep peat layers. N₂O release from a fertilized grassland site in November–May was 0.7 g N₂O m^–2, accounting for 38% of the total annual emission, while a forested bog released none and two efficiently drained forested fens 0.09 (28% of annual release) and 0.04 g N₂O m^–2 (27%) during the winter, respectively.     

The effect of different preservation methods on the carbon content of megacyclops gigas

The effect of various preservation methods on the carbon content of the copepod Megacyclops gigas was studied using the carbon content of living animals as a control. No differences were found between animals dried at –20, +60, or +105°C, but in all cases the carbon content was slightly lower than that found in living animals. Chemical preservation with formaldehyde and acid Lugol's solution rapidly resulted in about 35% loss of carbon. Freezing at –20°C in water caused less marked but significant loss of carbon, whereas freezing in dilute formaldehyde yielded values agreeing with those of living animals.     

Shrinking body size and climate warming: Many freshwater salmonids do not follow the rule

Declining body size is believed to be a universal response to climate warming and has been documented in numerous studies of marine and anadromous fishes. The Salmonidae are a family of coldwater fishes considered to be among the most sensitive species to climate warming; however, whether the shrinking body size response holds true for freshwater salmonids has yet to be examined at a broad spatial scale. We compiled observations of individual fish lengths from long-term surveys across the Northern Hemisphere for 12 species of freshwater salmonids and used linear mixed models to test for spatial and temporal trends in body size (fish length) spanning recent decades. Contrary to expectations, we found a significant increase in length overall but with high variability in trends among populations and species. More than two-thirds of the populations we examined increased in length over time. Secondary regressions revealed larger-bodied populations are experiencing greater increases in length than smaller-bodied populations. Mean water temperature was weakly predictive of changes in body length but overall minimal influences of environmental variables suggest that it is difficult to predict an organism's response to changing temperatures by solely looking at climatic factors. Our results suggest that declining body size is not universal, and the response of fishes to climate change may be largely influenced by local factors. It is important to know that we cannot assume the effects of climate change are predictable and negative at a large spatial scale.     

Adherence to host extracellular matrix and serum components by Enterococcus faecium isolates of diverse origin

Enterococcus faecium has emerged as an important cause of nosocomial infections over the last two decades. We recently demonstrated collagen type I (CI) as a common adherence target for some E. faecium isolates and a significant correlation was found to exist between acm -mediated CI adherence and clinical origin. Here, we evaluated 60 diverse E. faecium isolates for their adherence to up to 15 immobilized host extracellular matrix and serum components. Adherence phenotypes were most commonly observed to fibronectin (Fn) (20% of the 60 isolates), fibrinogen (17%) and laminin (Ln) (13%), while only one or two of the isolates adhered to collagen type V (CV), transferrin or lactoferrin and none to the other host components tested. Adherence to Fn and Ln was almost exclusively restricted to clinical isolates, especially the endocarditis-enriched nosocomial genogroup clonal complex 17 (CC17). Thus, the ability to adhere to Fn and Ln, in addition to CI, may have contributed to the emergence and adaptation of E. faecium , in particular CC17, as a nosocomial pathogen.     

Cross sectional properties of the human radial tuberosity

This study examines the cross sectional shape and biomechanical properties of the radial bone shaft at mid-radial tuberosity (RT) musculoskeletal marker (MSM). This information will provide insight into factors affecting bone modelling at muscle insertions. Radial shaft cross-sectional properties at radial tuberosity area (RTA) have not been previously studied. The material consists of 54 male skeletons derived from autopsies performed during the 1920s and 1930s and housed at the Central Natural History Museum, University of Helsinki. The age, sex and occupation of these individuals are known. We applied a pQCT (peripheral quantitative computed tomography) scan on the mid-site of the radial tuberosity to investigate the cross-sectional shape, the bone mineral density (BMD) and biomechanical properties. Our results indicate that bone modelling does not produce increased wall thickness or BMD at the RT site. Additionally we noticed that aging and physical activity affect the biomechanics of the RT and that the bone distribution at mid-RT is adapted to accommodate the biceps brachii muscle pull. We also found a clear association between RTA and biomechanical properties of mid-RT cross section.     

An Epidemiological and Genetic Study on Registered Diseases in Finnish Ayrshire Cattle

The epidemiology and genetic variability of the most common dairy cow diseases were examined. This paper describes the data set, lactation incidence rates and culling during lactation. The data set consisted of the lactation records of 73,368 Finnish Ayrshire dairy cows. Each cow was under observation for 2 days before and 305 days after calving. Lactational incidence rates (%) for the most common diseases were: ovulatory dysfunction 7.0, ketosis 6.0, acute mastitis 5.4, an oestrus and suboestrus 5.2, retained placenta 4.5, parturient paresis 3.8 and teat injury 2.6. Multiple logistic regression was utilized to investigate the possible effects of certain factors on culling. The model predicted the log odds for culling as an additive function of the explanatory factors. Using the estimated odds and forming the odds ratios it was possible to investigate, relative risks between any combination of groups of the explanatory factors. The risk of culling increased with parity after the second parturition, and with increasing herd milk yield. Mastitis and parturient paresis had positive associations with culling, while ketosis and infertility had negative associations. Heritability estimates for culling in various parity groups were from 2 % to 9 % on the binomial scale corresponding from 5 % to 14 % on the normal scale. There was a neagtive genetic correlation between culling and previous milk production.     

Transitions into and out of daylight saving time compromise sleep and the rest-activity cycles

Background  

The aim of this study was to analyze the effects of transition out of and into daylight saving time on the rest-activity cycles and sleep. Rest-activity cycles of nine healthy participants aged 20 to 40 years were measured around transitions out of and into daylight saving time on fall 2005 and spring 2006 respectively. Rest-activity cycles were measured using wrist-worn accelerometers. The participants filled in the Morningness-Eveningness and Seasonal Pattern Assessment Questionnaires before starting the study and kept a sleep diary during the study.     

Cortisol decreases the cellular concentration of translatable procollagen mRNA species in cultured human skin fibroblasts

The effect of cortisol on the cellular concentration of translatable procollagen mRNAs was studied in cultured human skin fibroblasts. Cortisol selectively decreased the amount of procollagen mRNAs, in comparison to the total mRNA activity, when the cells were grown in enriched medium conditions, i.e., with 10% newborn calf serum. The selective decrease was first observed after 6 h exposure to 1 μM cortisol. In depleted medium conditions, i.e., with 2% newborn calf serum, the initial response was a stimulatory one, followed after about 12 h by a decrease in the procollagen mRNA activity. The results suggest that the selective inhibitory effect of cortisol on the cellular concentration of translatable procollagen mRNA species needs an optimal serum concentration. Furthermore, the results give support to the hypothesis that the decrease in the procollagen mRNA concentration after cortisol administration is a secondary response, preceeded by the induction of some intracellular regulation system.     

Modeling the Hydration Layer around Proteins: HyPred

Protein hydration plays an integral role in determining protein function and stability. We develop a simple method with atomic level precision for predicting the solvent density near the surface of a protein. A set of proximal radial distribution functions are defined and calculated for a series of different atom types in proteins using all-atom, explicit solvent molecular dynamic simulations for three globular proteins. A major improvement in predicting the hydration layer is found when the protein is held immobile during the simulations. The distribution functions are used to develop a model for predicting the hydration layer with sub-1-Ångstrom resolution without the need for additional simulations. The model and the distribution functions for a given protein are tested in their ability to reproduce the hydration layer from the simulations for that protein, as well as those for other proteins and for simulations in which the protein atoms are mobile. Predictions for the density of water in the hydration shells are then compared with high occupancy sites observed in crystal structures. The accuracy of both tests demonstrates that the solvation model provides a basis for quantitatively understanding protein solvation and thereby predicting the hydration layer without additional simulations.