A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis

Chitin, a polymer of N-acetyl-d-glucosamine, is found in fungal cell walls but not in plants. Plant cells can perceive chitin fragments (chitooligosaccharides) leading to gene induction and defense responses. We identified a LysM receptor-like protein (LysM RLK1) required for chitin signaling in Arabidopsis thaliana. The mutation in this gene blocked the induction of almost all chitooligosaccharide-responsive genes and led to more susceptibility to fungal pathogens but had no effect on infection by a bacterial pathogen. Additionally, exogenously applied chitooligosaccharides enhanced resistance against both fungal and bacterial pathogens in the wild-type plants but not in the mutant. Together, our data indicate that LysM RLK1 is essential for chitin signaling in plants (likely as part of the receptor complex) and is involved in chitin-mediated plant innate immunity. The LysM RLK1-mediated chitin signaling pathway is unique, but it may share a conserved downstream pathway with the FLS2/flagellin- and EFR/EF-Tu-mediated signaling pathways. Additionally, our work suggests a possible evolutionary relationship between the chitin and Nod factor perception mechanisms due to the similarities between their potential receptors and between the signal molecules perceived by them.     

衡阳盆地土壤动物多样性研究

对衡阳盆地紫色页岩土壤 9种生境中的土壤动物进行了调查研究 ,共获得土壤动物35 85只 ,隶属于 4门 8纲 39目 ,其中线虫类、蜱螨类为优势类群 ,占总捕量的 5 0 2 4 % ;常见类群 1 2类 ,占总捕量的 4 4 0 1 %。从土壤动物水平分布上看 ,9种生境相似程度较大 ,其中尤以芦竹林和桃树林、阔叶林和桉树林、芦竹林和桉树林之间相似程度更突出。从土壤动物垂直分布上看 ,9种生境中只有桃树林、柑桔林垂直分布较为明显 ,而各种生境中土壤动物具有明显的表聚性。芦竹林、柑桔林、桉树林、菜地、阔叶林和桃树林 6种生境土壤动物群落的多样性及均匀度呈基本一致的趋势 ,且各生境间差别不大     

Effect of combination of high-intensity ultrasound treatment and dextran glycosylation on structural and interfacial properties of buckwheat protein isolates

This study investigated the effects of high-intensity ultrasound and glycosylation on the structural and interfacial properties of the Maillard reaction conjugates of buckwheat protein isolate (BPI). The covalent attachment of dextran to BPI was confirmed by examination of the Fourier-transform infrared spectra. Emulsifying properties of the conjugates obtained by ultrasound treatment were improved as compared to those obtained by classical heating. Structural feature analyses suggested that conjugates obtained by ultrasound treatment had less α-helix and more random coil, higher surface hydrophobicity and less compact tertiary structure as compared to those obtained by classical heating. The surface activity measurement revealed that the BPI–dextran conjugates obtained by ultrasound treatment were closely packed and that each molecule occupied a small area of the interface. Combination of ultrasonic treatment and glycosylation was proved to be an efficient way to develop new stabilizers and thickening agents for food in this study.     

Building CT Radiomics Based Nomogram for Preoperative Esophageal Cancer Patients Lymph Node Metastasis Prediction

PURPOSE: To build and validate a radiomics-based nomogram for the prediction of pre-operation lymph node (LN) metastasis in esophageal cancer. PATIENTS AND METHODS: A total of 197 esophageal cancer patients were enrolled in this study, and their LN metastases have been pathologically confirmed. The data were collected from January 2016 to May 2016; patients in the first three months were set in the training cohort, and patients in April 2016 were set in the validation cohort. About 788 radiomics features were extracted from computed tomography (CT) images of the patients. The elastic-net approach was exploited for dimension reduction and selection of the feature space. The multivariable logistic regression analysis was adopted to build the radiomics signature and another predictive nomogram model. The predictive nomogram model was composed of three factors with the radiomics signature, where CT reported the LN number and position risk level. The performance and usefulness of the built model were assessed by the calibration and decision curve analysis. RESULTS: Thirteen radiomics features were selected to build the radiomics signature. The radiomics signature was significantly associated with the LN metastasis (P<0.001). The area under the curve (AUC) of the radiomics signature performance in the training cohort was 0.806 (95% CI: 0.732-0.881), and in the validation cohort it was 0.771 (95% CI: 0.632-0.910). The model showed good discrimination, with a Harrell’s Concordance Index of 0.768 (0.672 to 0.864, 95% CI) in the training cohort and 0.754 (0.603 to 0.895, 95% CI) in the validation cohort. Decision curve analysis showed our model will receive benefit when the threshold probability was larger than 0.15. CONCLUSION: The present study proposed a radiomics-based nomogram involving the radiomics signature, so the CT reported the status of the suspected LN and the dummy variable of the tumor position. It can be potentially applied in the individual preoperative prediction of the LN metastasis status in esophageal cancer patients.     

不同放牧强度下短花针茅荒漠草原植被-土壤系统有机碳组分储量特征

草地生态系统作为陆地生态系统的重要组成部分,在全球碳循环中发挥着重要作用。以内蒙古短花针茅荒漠草原不同放牧强度样地为研究对象,通过分析地上植物、凋落物、根系、土壤中有机碳和土壤轻组有机碳,研究草原植被-土壤系统有机碳组分储量的变化特征,从碳储量角度为合理利用草原提供指导。研究结果表明:(1)不同放牧强度荒漠草原地上植物碳储量为11.98—44.51 g/m~2,凋落物碳储量10.43—36.12 g/m~2,根系(0—40cm)碳储量502.30—804.31 g/m~2,且对照区(CK)均显著高于中度放牧区(MG)、重度放牧区(HG);(2)0—40cm土壤碳储量为7817.43—9694.16 g/m~2,其中轻度放牧区(LG)碳储量为9694.16 g/m~2,显著高于CK、HG(P0.05);(3)植被—土壤系统的碳储量为8342.14—10494.80 g/m~2,LGMGCKHG,有机碳主要储存于土壤当中,占比约90.54%—93.71%,适度放牧利用有利于发挥草地生态系统的碳汇功能;(4)土壤轻组有机碳储量为484.20—654.62 g/m~2,LG储量最高,表明适度放牧有助于草原土壤营养物质的循环和积累。     

A SPOT on the chromatin landscape? Histone peptide arrays as a tool for epigenetic research

Post-translational modifications of histones serve as docking sites and signals for effector proteins and chromatin-remodeling enzymes, thereby influencing many fundamental cellular processes. Nevertheless, there are huge gaps in the knowledge of which proteins read and write the 'histone code'. Several techniques have been used to decipher complex histone-modification patterns. However, none is entirely satisfactory owing to the inherent limitations of in vitro studies of histones, such as deficits in the knowledge of the proteins involved, and the associated difficulties in the consistent and quantitative generation of histone marks. An alternative technique that could prove to be a useful tool in the study of the histone code is the use of synthetic peptide arrays (SPOT blot analysis) as a screening approach to characterize macromolecules that interact with specific covalent modifications of histone tails.     

Gibberellin Acts through Jasmonate to Control the Expression of MYB21, MYB24, and MYB57 to Promote Stamen Filament Growth in Arabidopsis

Precise coordination between stamen and pistil development is essential to make a fertile flower. Mutations impairing stamen filament elongation, pollen maturation, or anther dehiscence will cause male sterility. Deficiency in plant hormone gibberellin (GA) causes male sterility due to accumulation of DELLA proteins, and GA triggers DELLA degradation to promote stamen development. Deficiency in plant hormone jasmonate (JA) also causes male sterility. However, little is known about the relationship between GA and JA in controlling stamen development. Here, we show that MYB21, MYB24, and MYB57 are GA-dependent stamen-enriched genes. Loss-of-function of two DELLAs RGA and RGL2 restores the expression of these three MYB genes together with restoration of stamen filament growth in GA-deficient plants. Genetic analysis showed that the myb21-t1 myb24-t1 myb57-t1 triple mutant confers a short stamen phenotype leading to male sterility. Further genetic and molecular studies demonstrate that GA suppresses DELLAs to mobilize the expression of the key JA biosynthesis gene DAD1, and this is consistent with the observation that the JA content in the young flower buds of the GA-deficient quadruple mutant ga1-3 gai-t6 rga-t2 rgl1-1 is much lower than that in the WT. We conclude that GA promotes JA biosynthesis to control the expression of MYB21, MYB24, and MYB57. Therefore, we have established a hierarchical relationship between GA and JA in that modulation of JA pathway by GA is one of the prerequisites for GA to regulate the normal stamen development in Arabidopsis.     

湖南永州地区不同生境条件下钙质土土壤动物多样性

对湖南永州5种不同生境条件的钙质土土壤动物多样性进行了调查。共获得土壤动物2 024只,隶属于4门10纲30目,其中线虫类、蜱螨类、弹尾类为优势类群,占总捕量的66.10%;常见类群9类,占总捕量的27.17%。从水平分布上看,5种生境相似程度较大,其中尤以苗圃和杉木林、苗圃和柏树林、苗圃和荒地之间的相似程度较高。从垂直分布上看,5种生境中只有苗圃地较为明显,而各种生境中土壤动物具有明显的表聚性。苗圃、杉木林、柏树林3种生境土壤动物群落的多样性及均匀度呈基本一致趋势,且各生境间差别不大。