Sampling strategies for the assessment of tree species diversity

Abstract. This paper aims at proposing efficient vegetation sampling strategies. It describes how the estimation of species richness and diversity of moist evergreen forest is affected by (1) sampling design (simple random sampling, random cluster sampling, systematic cluster sampling, stratified cluster sampling); (2) choice of species richness estimators (number of observed species vs. non-parametric estimators) and (3) choice of diversity index (Simpson vs. Shannon). Two sites are studied: a 28-ha area situated in the Western Ghats of India and a 25-ha area located at Pasoh in Peninsular Malaysia. The results show that: (1) whatever the sampling strategy, estimates of species richness depend on sample size in these very diverse forest ecosystems which contain many rare species; (2) Simpson's diversity index reaches a stable value at low sample sizes while Shannon's index is affected more by the addition of rare species with increasing sample size; (3) cluster sampling strategies provide a good compromise between cost and statistical efficiency; (4) 300 - 400 sample trees grouped in small clusters (10–50 individuals) are enough to obtain unbiased and precise estimates of Simpson's index; (5) the local topography of the Western Ghats has a major influence on forest composition, the steep slopes being richer and more diverse than the ridges and gentle slopes; (6) stratified cluster sampling is thus an interesting alternative to systematic cluster sampling.     

Relating species density to environmental variables in presence of spatial autocorrelation: a study case on soil nematodes distribution

The relationships between soil nematodes and soil texture, carbon content and depth were assessed in both a cultivated and uncultivated plots. Simple correlation coefficient analyses indicated a negative linear correlation between the plant-parasitic species Helicotylenchus retnsus Siddiqui and Brown and soil clay content in the uncultivated site. However, Mantel Lests showed this correlation to be spurious and only due to the presence of a common spatial pattern in the variables distribution. Both H. retusus density and soil clay content appeared to be independently driven by a common, unknown cause. The use of suitable statistical methods to analyse spatially dependent variables proved to be particularly fruitful in that they prevent spurious correlations and allow us to test different causal models involving the set of variables at hand.     

The phytoplankton community of the River Meuse,Belgium: seasonal dynamics (year 1992) and the possible incidence of zooplankton grazing

Qualitative and quantitative aspects of the phytoplankton of the River Meuse were studied during 1992, at a point 537 km from the source. The phytoplankton was dominated by diatoms and green algae. The Stephanodiscus hantzschii-group was especially prominent. Other important taxa were Cyclotella meneghiniana, small Cyclotella and Thalassiosira, Aulacoseira ambigua and Nitzschia acicularis. Cell abundances varied from less than 1000 units ml^–1 to about 25 000 – 30 000 units ml^–1 during the blooms. The Stephanodiscus hantzchii-group constituted almost entirely the first spring bloom. During the summer period, small Thalassiosiraceae developed markedly and large Thalassiosira weissflogii appeared. During this period, green algae dominated diatoms as expressed in cell abundances. The main Chlorococcales were Scenedesmus quadricauda, Scenedesmus div. sp., Dictyosphaerium ehrenbergianum and Pediastrum duplex. Dinophyceae contributed a significant biomass during the summer period. Total biomass varied between 100 and 3 650 µg Cl^–1. As previously observed (Descy, 1987), the factors regulating the phytoplankton growth were clearly physical variables: discharge, temperature and irradiance. However, in the summer period, low abundances might indicate a regulation by biotic factors. The impact of grazing by zooplankton is discussed, on the basis of observations of zooplankton development in the River Meuse and on the basis of simulation by a mathematical model. A comparison is carried out with recent data of phytoplankton in large European rivers.     

Development and ecological importance of phytoplankton in a large lowland river (River Meuse,Belgium)

The ecological importance of the River Meuse phytoplankton with regard to carbon and nutrient transport has been examined in two reaches of the Belgian course of the river.Field measurements of total particulate organic carbon (POC), particulate organic nitrogen (PON) and particulate phosphorus (PP) show that the large autochtonous production of organic matter strongly affects the carbon and nutrient budget of the aquatic system. During the growing season, phytoplankton accounts for nearly 60% of the POC and dominates the PON. Calculations of the carbon and oxygen budget in the upper reach of the Belgian Meuse demonstrates that the ecosystem is autotrophic, i.e. that autochtonous FPOM (fine particulate organic matter) production is the major carbon input. This suggests that in large lowland rivers, primary production (P) may exceed community respiration (R), i.e. P:R>1, whereas they are assumed to be heterotrophic (P:R<1) in the River Continuum concept.The question of maintenance of phytoplankton in turbid mixed water columns is also addressed, and the case of the River Meuse is treated on the basis of studies of photosynthesis and respiration (ETS measurements). The results suggest that the potamoplankton may show some low-light acclimation, through an increase of chlorophyll a relative to biomass, when it comes to deep downstream reaches, and that algal respiration rate may be reduced. A simulation of the longitudinal development of the algal biomass shows the different phases of algal growth and decline along the river and brings support to the importation hypothesis for explaining maintenance of potamoplankton in the downstream reaches.     

Waterfowl-wetland relationships in the Aspen Parkland of British Columbia: comparison of analytical methods

We explored the relationships between aquatic bird abundance and various pond features (physical and chemical) using data from 112 ponds located in the Aspen Parkland of British Columbia. As expected, pond size was the most important factor influencing the number of aquatic birds present. Total dissolved nitrogen, conductivity and calcium were positively associated with the abundance of several species whereas chloride tended to be negatively associated. The abundance of dabbling ducks was positively associated with turbidity and total dissolved nitrogen and negatively with percent of forested shoreline, percent of marsh and chloride. The abundance of diving ducks was associated positively with pond depth, conductivity and total dissolved nitrogen and negatively with percent of marsh and phosphorus levels. Pond area influenced more the abundance of diving ducks than dabbling ducks. Relationships between bird density and pond features were affected significantly by the area unit used to calculate density. For example, the density of Bufehead (Bucephala albeola) was correlated positively with pH and conductivity when expressed per area of water 0–2 m deep but negatively when expressed per total area of pond. Results highlight the problems associated with interpreting correlative type studies especially the difficulties in assessing the biological significance of the observed correlations. It underscores the urgent need for experimental approaches to bird-habitat studies.     

Unaffected nodulation and nitrogen fixation in carbohydrate pleiotropic mutants ofRhizobium meliloti

Pleiotropic mutants were isolated fromRhizobium meliloti M5N1 with the resistance transposon Tn5. They failed to use carbohydrates as carbon source, but not dicarboxylic acids. Diauxic growth properties of the wild type and uptake assays in both M5N1 and a mutant strain 2.10 showed that the mutant was affected in the active transport of sugars. Exogenous cyclic AMP failed to affect the phenotype of the mutant, and a relatively high frequency of reversion was observed. This suggests that the mutant 2.10 was probably altered in acrp-like gene. However, its symbiotic properties remained unaffected. Thus, symbiosis does not depend on sugar utilization.     

Crystal structure of Escherichia coli TEM1 β-lactamase at 1.8 Å resolution

The X-ray structure of Escherichia coli TEM1β-lactamase has been refined to a crystallorgphic R-factor of 16.4% for 22,510 reflections between 5.0 and 1.8 Å resolution; 199 water molecules and 1 sulphate ion were included in refinement. Except for the tips of a few solvent-exposed side chains, all protein atoms have clear electron density and refined to an average atomic temperature factor of 11 Ų. The estimated coordinates error is 0.17 Å. The substrate binding site is located at the interface of the two domains of the protein and contains 4 water molecules and the sulphate anion. One of these solvent molecules is found at hydrogen bond distance from S70 and E166. S70 and S130 are hydrogen bonded to K73 and K234, respectively. It was found that the E. coli TEM1 and Staphylococcus aureus PC1 β-lactamases crystal structures differ in the relative orientations of the two domains composing the enzymes, which result in a narrowed substrate binding cavity in the TEM1 enzyme. Local but significant differences in the vicinity of this site may explain the occurrence of TEM1 natural mutants with extended substrate specificities. © 1993 Wiley-Liss, Inc.     

Age-related changes in linoleic acid bioconversion by isolated hepatocytes from spontaneously hypertensive and normotensive rats

This study points out the hepatocyte interconversion of the linoleic acid family during hypertension. Hepatocyte 6 desaturase activity was higher in 1 month-old spontaneously hypertensive rats than in normotensive controls. A similar tendency was observed in 6 month-old SHR. 5 desaturase activity was higher only in 1 month-old spontaneously hypertensive rats as compared to controls. Desaturase activities were particularly high at the age of 6 months. The hepatocyte fatty acid composition showed an impairment of n-6 polyunsaturated fatty acid metabolism in spontaneously hypertensive animals. Changes were greater in the young prehypertensive rats than in adults. A storage of n-3 long chain fatty acids is remarkable in adult hypertensive rats, suggesting an alteration in peroxisomal oxidation. Such modifications may be related to the prostaglandin precursors availability to peripheral tissues such as kidney.     

A Third Locus for Autosomal Dominant Cerebellar Ataxia Type 1 Maps to Chromosome 14q24.3-qter: Evidence for the Existence of a Fourth Locus

The autosomal dominant cerebellar ataxias (ADCA) type I are a group of neurological disorders that are clinically and genetically heterogeneous. Two genes implicated in the disease, SCA1 (spinal cerebellar ataxia 1) and SCA2, are already localized. We have mapped a third locus to chromosome 14q24.3-qter, by linkage analysis in a non-SCA1/non-SCA2 family and have confirmed its existence in a second such family. We suggest designating this new locus “SCA3.” Combined analysis of the two families restricted the SCA3 locus to a 15-cM interval between markers D14S67 and D14S81. The gene for Machado-Joseph disease (MJD), a clinically different form of ADCA type I, has been recently assigned to chromosome 14q24.3-q32. Although the SCA3 locus is within the MJD region, linkage analyses cannot yet demonstrate whether they result from mutations of the same gene. Linkage to all three loci (SCA1, SCA2, and SCA3) was excluded in another family, which indicates the existence of a fourth ADCA type I locus.