Assessing the implications of the loss of set‐aside for farmland birds

Between 1988 and 2007, set‐aside, a European Commission production control measure, took an average of 10% of arable farmland in the EU out of production each year. In 2007, the set‐aside rate was set to 0% and the scheme was later abandoned altogether. By assessing associations of farmland birds with set‐aside and quantifying the extent of set‐aside loss, this study aims to assess the implications of set‐aside loss for farmland bird conservation. During the lifespan of set‐aside, a large number of studies assessed the biodiversity value of set‐aside and other agricultural crops and habitats. Where possible we considered measurable benefits of set‐aside. However, some studies did not specify the type of set‐aside and in some cases set‐aside fields were grouped with cereal stubble fields. In these cases, we took the pragmatic approach of assessing the value of generic stubble fields as a conservative minimum estimate of the value of set‐aside fields. A re‐analysis of data from 30 intensive studies demonstrates that farmland bird densities tended to be higher on set‐aside than on either cereal or oilseed rape crops. Without mitigation, these are the two crops likely to replace most set‐aside fields. We estimate that 26–52% of the farmland populations of key granivorous passerines were present on stubble fields, giving an indication of the proportion of birds likely to be present on set‐aside fields within this broader category. An extensive survey of lowland farmland during winters 1999/2000, 2000/2001 and 2002/2003, repeated in February 2008, showed a doubling of the number of 1‐km squares with no stubble and a halving of the number of squares with more than 10 ha of stubble. After set‐aside abandonment, 72% of squares had no stubble in the important late winter period, confirming that many of the former stubble fields were retained as set‐aside. A simple correlative model suggests that this could cause a small increase in the rate of decline of Skylark Alauda arvensis and Yellowhammer Emberiza citrinella populations, assuming causal links between stubble area and demography. However, even if this assumption cannot be supported, these results clearly indicate that a significant proportion of some farmland bird populations will need to find alternative breeding and foraging habitats.     

Assessment of long-term changes in habitat availability for Arctic charr (Salvelinus alpinus) in a temperate lake using oxygen profiles and hydroacoustic surveys

1. Hydroacoustics (2002–04) and long‐term oxygen data (1969–2004) have been used in conjunction to examine the habitat of Arctic charr in the north and south basins of Windermere, U.K., a temperate lake subjected to cultural eutrophication and subsequent nutrient management. 2. Since 1969 there has been a gradual decline in the oxygen concentration in the bottom waters of both basins of 0.03–0.04 mg L^?1year^?1, resulting in up to 43% of the volume of the south basin having an oxygen concentration <5 mg L^?1 in the early autumn. 3. Hydroacoustic data indicate that most Arctic charr routinely avoid the upper 10 m of the water column irrespective of temperature, with the implication that an observed gradual warming of the lake has not yet directly impacted upon their habitat. 4. In recent years there has been a behavioural response of the Arctic charr population to migrate vertically to avoid oxygen concentrations <2.3–3.1 mg L^?1. Further, the depth of the lower bound of the Arctic charr population is shown to be highly correlated with the deep water oxygen concentration throughout the year prior to autumnal overturn.     

Making the biodiversity monitoring system sustainable: Design issues for large‐scale monitoring systems

Abstract There is strong demand for information about the status of, and trends in, Australia's biodiversity. Almost inevitably, this demand for information has led to demand for a broad‐scale monitoring system. However, the decision to embark on a monitoring system should only be made once it has been established that a monitoring system is the optimal way to inform management. We stress the need to invest resources in assessing whether a monitoring system is necessary before committing resources to the design and implementation of the system. Current debate associated with the design of a biodiversity monitoring system has similarities to the debate within the range management profession in the early 1970s. The experience with range monitoring shows that large‐scale monitoring systems such as those being proposed will require considerable resources, recurrently expended into the distant future, but with only a limited ability to adapt to new demands. Those involved in any biodiversity monitoring system will need to understand the implications of investing in a long‐term monitoring programme. Monitoring sustainability will only be possible if the monitoring system is itself sustainable. We discuss a number of issues that need to be addressed before the system is at all sustainable. These attributes are a mix of biophysical, social and institutional attributes and highlight the view that monitoring systems of the type being suggested comprise an unusual mixture of attributes not found in typical scientific activity. The present paper is not a technical manual, but rather considers some of the design issues associated with designing and implementing large‐scale monitoring systems.     

Phylogeny and classification of Aedini (Diptera: Culicidae), based on morphological characters of all life stages

Higher‐level relationships within Aedini, the largest tribe of Culicidae, are explored using morphological characters of eggs, fourth‐instar larvae, pupae, and adult females and males. In total, 172 characters were examined for 119 exemplar species representing the existing 12 genera and 56 subgenera recognized within the tribe. The data for immature and adult stages were analysed separately and in combination using equal (EW) and implied weighting (IW). Since the classification of Aedini is based mainly on adult morphology, we first tested whether adult data alone would support the existing classification. Overall, the results of these analyses did not reflect the generic classification of the tribe. The tribe as a whole was portrayed as a polyphyletic assemblage of Aedes and Ochlerotatus within which eight (EW) or seven (IW) other genera were embedded. Strict consensus trees (SCTs) derived from analyses of the immature stages data were almost completely unresolved. Combining the adult and immature stages data resulted in fewer most parsimonious cladograms (MPCs) and a more resolved SCT than was found when either of the two data subsets was analysed separately. However, the recovered relationships were still unsatisfactory. Except for the additional recovery of Armigeres as a monophyletic genus, the groups recovered in the EW analysis of the combined data were those found in the EW analysis of adult data. The IW analysis of the total data yielded eight MPCs consisting of three sets of two mutually exclusive topologies that occurred in all possible combinations. We carefully studied the different hypotheses of character transformation responsible for each of the alternative patterns of relationship but were unable to select one of the eight MPCs as a preferred cladogram. Overall, the relationships within the SCT of the eight MPCs were a significant improvement over those found by equal weighting. Aedini and all existing genera except Ochlerotatus and Aedes were recovered as monophyletic. Ochlerotatus formed a polyphyletic assemblage basal to Aedes. This group included Haemagogus and Psorophora, and also Opifex in a sister‐group relationship with Oc. (Not.) chathamicus. Aedes was polyphyletic relative to seven other genera, Armigeres, Ayurakitia, Eretmapodites, Heizmannia, Udaya, Verrallina and Zeugnomyia. With the exception of Ae. (Aedimorphus), Oc. (Finlaya), Oc. (Ochlerotatus) and Oc. (Protomacleaya), all subgenera with two or more species included in the analysis were recovered as monophyletic. Rather than leave the generic classification of Aedini in its current chaotic state, we decided a reasonable and conservative compromise classification would be to recognize as genera those groups that are ‘weighting independent’, i.e. those that are common to the results of both the EW and IW analyses of the total data. The SCT of these combined analyses resulted in a topology of 29 clades, each comprising between two and nine taxa, and 30 taxa (including Mansonia) in an unresolved basal polytomy. In addition to ten genera (Armigeres, Ayurakitia, Eretmapodites, Haemagogus, Heizmannia, Opifex, Psorophora, Udaya, Verrallina and Zeugnomyia), generic status is proposed for the following: (i) 32 existing subgenera of Aedes and Ochlerotatus, including nine monobasic subgenera within the basal polytomy, i.e. Ae. (Belkinius), Ae. (Fredwardsius), Ae. (Indusius), Ae. (Isoaedes), Ae. (Leptosomatomyia), Oc. (Abraedes), Oc. (Aztecaedes), Oc. (Gymnometopa) and Oc. (Kompia); (ii) three small subgenera within the basal polytomy that are undoubtedly monophyletic, i.e. Ae. (Huaedes), Ae. (Skusea) and Oc. (Levua), and (iii) another 20 subgenera that fall within the resolved part of the SCT, i.e. Ae. (Aedes), Ae. (Alanstonea), Ae. (Albuginosus), Ae. (Bothaella), Ae. (Christophersiomyia), Ae. (Diceromyia), Ae. (Edwardsaedes), Ae. (Lorrainea), Ae. (Neomelaniconion), Ae. (Paraedes), Ae. (Pseudarmigeres), Ae. (Scutomyia), Ae. (Stegomyia), Oc. (Geoskusea), Oc. (Halaedes), Oc. (Howardina), Oc. (Kenknightia), Oc. (Mucidus), Oc. (Rhinoskusea) and Oc. (Zavortinkius). A clade consisting of Oc. (Fin.) kochi, Oc. (Fin.) poicilius and relatives is raised to generic rank as Finlaya, and Downsiomyia Vargas is reinstated from synonymy with Finlaya as the generic name for the clade comprising Oc. (Fin.) leonis, Oc. (Fin.) niveus and their relatives. Three other species of Finlaya?Oc. (Fin.) chrysolineatus, Oc. (Fin.) geniculatus and Oc. (Fin.) macfarlanei? fall within the basal polytomy and are treated as Oc. (Finlaya) incertae sedis. Ochlerotatus (Ochlerotatus) is divided into three lineages, two of which, Oc. (Och.) atropalpus and Oc. (Och.) muelleri, are part of the basal polytomy. The remaining seven taxa of Oc. (Ochlerotatus) analysed, including the type species, form a reasonably well‐supported group that is regarded as Ochlerotatus s.s. Ochlerotatus (Rusticoidus) is retained as a subgenus within Ochlerotatus s.s. Ochlerotatus (Nothoskusea) is recognized as a subgenus of Opifex based on two unique features that support their sister‐group relationship. A new genus, Tanakaius gen. nov. , is proposed for Oc. (Fin.) togoi and the related species Oc. (Fin.) savoryi. The taxonomic status and generic placement of all currently valid species of Aedini are listed in an appendix. © 2004 The Linnean Society of London, Zoological Journal of the Linnean Society, 2004, 142 , 289?368.     

The role of nitric oxide in cancer

Nitric oxide (NO) is a pleiotropic regulator, critical to numerous biological processes, including va-sodilatation, neurotransmission and macrophage-mediated immunity. The family of nitric oxide synthases (NOS) comprises inducible NOS (iNOS), endothelial NOS (eNOS), and neuronal NOS (nNOS). Interestingly, various studies have shown that all three isoforms can be involved in promoting or inhibiting the etiology of cancer. NOS activity has been detected in tumour cells of various histogenetic origins and has been associated with tumour grade, proliferation rate and expression of important signaling components associated with cancer development such as the oestrogen receptor. It appears that high levels of NOS expression (for example, generated by activated macrophages) may be cytostatic or cytotoxic for tumor cells, whereas low level activity can have the opposite effect and promote tumour growth. Paradoxically therefore, NO (and related reactive nitrogen species) may have both genotoxic and angiogenic pro     

The Effects of Temperature and Daylength on the Rate of Development of Pigeonpea

Eleven cultivars of pigeonpea, representing five different maturitygroups, were grown under controlled conditions to determinehow the rate of development from sowing to flower bud initiation(FBI) and sowing to flowering was affected by temperature anddaylength, the two environmental variables thought to have mostinfluence on reproductive development. Both temperature and daylength had substantial effects overthe range 16–32 C and 10–14 h respectively. Comparisonswithin the 12 h daylength treatment showed no consistent patternwith mean temperature. A discrete-rate analysis was used todetermine the effect on development of each of the temperaturesmaking up the various treatment combinations of day and nighttemperature. The rate of development from sowing to FBI varied among cultivars.The responses to temperature were all strongly curvilinear withoptima between 20 and 24 C. The rate of development from sowingto flowering showed a similar pattern. The effect of daylengthon the rate of development was the greatest between sowing andFBI, with the greatest sensitivity between 12 and 14 h. For the range of conditions considered, temperature had at leastas great an influence as daylength on the rates of developmentfrom sowing to FBI and from sowing to flowering. Some of theresponses to time of planting that have previously been attributedto daylength effects may, in fact, have been due to temperature.The responses to temperature of reproductive and vegetativedevelopment are very different. Phenology, Cajanus cajan     

Barlow's Lark: a new species in the Karoo Lark Certhilauda albescens complex of southwest Africa

The Karoo Lark Certhilauda albescens complex, endemic to southwest Africa, is characterized by regional phenotypic variation. Recent consensus has been to recognize two species, Dune Lark Certhilauda erythrochlamys and Karoo Lark Certhilauda albescens, but intermediate forms around the mouth of the Orange River have resulted in some authors treating it as a single polytypic species complex. We reexamined the status of taxa in this group by sequencing a segment of the mitochondrial DNA cytochrome b gene. Most samples were from the area around the mouth of the Orange River, where there is considerable local phenotypic variation. Our results indicate that the complex comprises three species, Karoo Lark, Dune Lark and Barlow's Lark Certhilauda barlowi, separated by 1.9-5.5% sequence divergence. There were no sequence differences among described subspecies, but there was limited variation among Dune Lark individuals (sequence divergence values 0.2-0.4%). The Red Lark Certhilauda burra is closely related to the Karoo Lark complex; indeed, it may be that Karoo Lark is the ancestral form. There was morphological (biometrics and plumage) and behavioural (male display song structure) support for the recognition of Barlow's Lark as a separate species. Species ranges within the complex are allopatric or narrowly parapatric, and they occur in different habitats and climatic conditions. Discriminant function analysis correctly identified 99% of skins assigned to taxa based on range, but a few individuals collected in the contact zone between Karoo and Barlow's Larks exhibited intermediate phenotypes, and further investigations are warranted to search for evidence of hybridization. The newly recognized Barlow's Lark has a maximum range of 18,000 km². It appears to have disappeared from heavily grazed farms around Aus, southern Namibia, and occurs almost exclusively in diamond mining areas, where domestic livestock are excluded. Changes to land use practices which reduce vegetation cover could seriously impact this species.