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101.
Functional roles of seven hydrophobic residues on the interface between the actuator (A) and phosphorylation (P) domains of sarcoplasmic reticulum Ca2+-ATPase were explored by alanine and serine substitutions. The residues examined were Ile179/Leu180/Ile232 on the A domain, Val705/Val726 on the P domain, and Leu119/Tyr122 on the loop linking the A domain and M2 (the second transmembrane helix). These residues gather to form a hydrophobic cluster around Tyr122 in the crystal structures of Ca2+-ATPase in Ca2+-unbound E2 (unphosphorylated) and E2P (phosphorylated) states but are far apart in those of Ca2+-bound E1 (unphosphorylated) and E1P (phosphorylated) states. The substitution-effects were also compared with those of Ile235 on the A domain/M3 linker and those of T181GE of the A domain, since they are in the immediate vicinity of the Tyr122-cluster. All these substitutions almost completely inhibited ATPase activity without inhibiting Ca2+-activated E1P formation from ATP. Substitutions of Ile235 and T181GE blocked the E1P to E2P transition, whereas those in the Tyr122-cluster blocked the subsequent E2P hydrolysis. Substitutions of Ile235 and Glu183 also blocked EP hydrolysis. Results indicate that the Tyr122-cluster is formed during the E1P to E2P transition to configure the catalytic site and position Glu183 properly for hydrolyzing the acylphosphate. Ile235 on the A domain/M3 linker likely forms hydrophobic interactions with the A domain and thereby allowing the strain of this linker to be utilized for large motions of the A domain during these processes. The Tyr122-cluster, Ile235, and T181GE thus seem to have different roles and are critical in the successive events in processing phosphorylated intermediates to transport Ca2+. 相似文献
102.
Yan Shao Cheng Chen Honghuan Song Guoli Li Qiao Liu Yan Li Limei Zhu Leonardo Martinez Wei Lu 《PLoS neglected tropical diseases》2015,9(3)
BackgroundNontuberculous mycobacteria (NTM) have been reported to be increasing worldwide and its geographic distribution differs by region. The aim of this study was to describe the epidemiology and distribution of NTM in the eastern part of China.MethodsSputum samples were collected from 30 surveillance sites for tuberculosis drug resistance test from May 1, 2008 to December 31, 2008. Identification was performed using a biochemical test, multiplex PCR and GenoType Mycobacterium CM/AS assay.ResultsA total of 1779 smear positive clinical isolates were obtained, of which 60 (3.37%) were NTM. Five species/complex of NTM were identified; M. intracellulare was the predominated species (68.33%), followed by M. abscessus-M. immunogenum (13.33%), Mycobacterium spec. (10.00%), M. Kansasii (6.67%) and M. peregrinum-M. alvei-M. septicum (1.67%).Conclusion
M. intracellulare was the main species of NTM in the eastern part of China and clinical physicians should pay more attention to NTM induced pulmonary disease. 相似文献
103.
利用稳定氢氧同位素定量区分白刺水分来源的方法比较 总被引:6,自引:0,他引:6
水是影响植物分布的重要生态因子之一,对植物水源的研究有助于在全球变化背景下了解植物的时空分布格局.根据同位素质量守恒,利用稳定氢氧同位素可以确定植物水分来源,相关的方法也不断改进.利用三源线性混合模型、多源线性混合模型、吸水深度模型以及动态模型分别对格尔木白刺(Nitraria Tangutorum)的水分来源进行了对比研究,发现格尔木白刺主要吸收利用50-100 cm处的土壤水及地下水.在研究方法上,各模型都有自己的应用范围和局限:三源线性混合模型一般只能在植物吸收的水分来源不超过3个的情况下运行;多源线性混合模型弥补了三源线性混合模型的不足,可以同时比较多种来源水各自对白刺的贡献率及贡献范围;吸水深度模型弥补了混合模型中不能计算白刺对土壤水的平均吸水深度的缺陷;动态模型则会为未来降水格局变化对植物的时空分布的影响研究起很大作用.针对不同的适用范围,模型的选择及综合应用会更广泛.但是,该技术还存在一些不足,需要结合测定土水势,富氘水的示踪等方法来弥补. 相似文献
104.
Chaozhen Chen Zhiwei Jiang Qifeng Jiang Wei Dai Qin Shao Qianming Chen Ying Wang Guoli Yang 《生物化学与生物物理学报:疾病的分子基础》2021,1867(11):166217
Peri-implantitis could lead to progressive bone loss and implant failure; however, the mechanism of peri-implantitis remains unclear. Based on emerging evidence, pyroptosis, a novel proinflammatory programmed death, contributes to different oral infectious diseases. In the present study, we investigated the involvement of cleaved caspase-3 and gasdermin E (GSDME) in peri-implantitis and established a pyroptosis model in vitro. By collecting and examining the inflamed biopsies around peri-implantitis, we found that the pyroptosis-related markers (caspase-3, GSDME, and IL-1β) were enhanced relative to levels in control individuals. Furthermore, human gingival epithelium cells (HGECs) induced by tumor necrosis factor-α (TNF-α) exhibited pyroptosis morphological changes (cell swelling and balloon-shaped bubbles) and upregulated expression of pyroptosis-related markers. Pretreated with Ac-DEVD-CHO (a caspase-3 inhibitor) or GSDME small interference RNA (siRNA) were found to attenuate pyroptosis in HGECs. In conclusion, our findings revealed a high expression of caspase-3 and GSDME in the inflamed biopsies of peri-implantitis and confirmed that the caspase-3/GSDME pathway mediates TNF-α-triggered pyroptosis in human gingival epithelium cells, which provides a new target for peri-implantitis treatment. 相似文献
105.
Yamasaki K Wang G Daiho T Danko S Suzuki H 《The Journal of biological chemistry》2008,283(43):29144-29155
Tyr(122)-hydrophobic cluster (Y122-HC) is an interaction network formed by the top part of the second transmembrane helix and the cytoplasmic actuator and phosphorylation domains of sarcoplasmic reticulum Ca(2+)-ATPase. We have previously found that Y122-HC plays critical roles in the processing of ADP-insensitive phosphoenzyme (E2P) after its formation by the isomerization from ADP-sensitive phosphoenzyme (E1PCa(2)) (Wang, G., Yamasaki, K., Daiho, T., and Suzuki, H. (2005) J. Biol. Chem. 280, 26508-26516). Here, we further explored kinetic properties of the alanine-substitution mutants of Y122-HC to examine roles of Y122-HC for Ca(2+) release process in E2P. In the steady state, the amount of E2P decreased so that of E1PCa(2) increased with increasing lumenal Ca(2+) concentration in the mutants with K(0.5) 110-320 microm at pH 7.3. These lumenal Ca(2+) affinities in E2P agreed with those estimated from the forward and lumenal Ca(2+)-induced reverse kinetics of the E1PCa(2)-E2P isomerization. K(0.5) of the wild type in the kinetics was estimated to be 1.5 mM. Thus, E2P of the mutants possesses significantly higher affinities for lumenal Ca(2+) than that of the wild type. The kinetics further indicated that the rates of lumenal Ca(2+) access and binding to the transport sites of E2P were substantially slowed by the mutations. Therefore, the proper formation of Y122-HC and resulting compactly organized structure are critical for both decreasing Ca(2+) affinity and opening the lumenal gate, thus for Ca(2+) release from E2PCa(2). Interestingly, when K(+) was omitted from the medium of the wild type, the properties of the wild type became similar to those of Y122-HC mutants. K(+) binding likely functions via producing the compactly organized structure, in this sense, similarly to Y122-HC. 相似文献
106.
两种DNA探针杂交检测结核分支杆菌方法的研究 总被引:3,自引:0,他引:3
为改进结核杆菌DNA探针的特异性与实用性,研制了以生物素标记的两种对结核分支杆菌特异的DNA探针:一个5’端标记的20bp的寡核苷酸探针和一个采用PCR方法合成的188bp长链探针。两种探针分别与结核分支杆菌的全染色体DNA,以及基因组上IS6110序列的一段317bp的PCR扩增产物进行斑点杂交,以碱性磷酸酶(AP)催化的染色反应检测,测试了两个探针的敏感性和特异性。系统地比较研究了两种探针杂交检测条件:探针的浓度选择,杂交温度与洗膜温度的选择,以及杂交与洗膜温度对检测的敏感性与特异性的影响。寡核苷酸探针和188bp探针杂交检测纯化结核分支杆菌基因组DNA的敏感性分别为100ng与6ng,杂交检测PCR产物的敏感性分别是400pg与50pg。两探针的最佳杂交浓度均为40~160ng/ml,最佳杂交温度分别是42℃与68℃,最佳洗膜温度分别是60℃与60~68℃之间。两种探针均仅与结核分支杆菌及BCG有杂交信号,而与其它受试分支杆菌及非分支杆菌杂交结果都呈阴性。它们的特异性都很强,但188bp探针的敏感性约是寡核苷酸探针的7~16倍,而且188bp探针检测本底较低,是检测结核分支杆菌的较佳选择 相似文献
107.
The human checkpoint sensor Rad9-Rad1-Hus1 interacts with and stimulates NEIL1 glycosylase 总被引:1,自引:0,他引:1 下载免费PDF全文
The checkpoint protein Rad9/Rad1/Hus1 heterotrimer (the 9-1-1 complex) is structurally similar to the proliferating cell nuclear antigen sliding clamp and has been proposed to sense DNA damage that leads to cell cycle arrest or apoptosis. Human (h) NEIL1 DNA glycosylase, an ortholog of bacterial Nei/Fpg, is involved in repairing oxidatively damaged DNA bases. In this study, we show that hNEIL1 interacts with hRad9, hRad1 and hHus1 as individual proteins and as a complex. Residues 290–350 of hNEIL1 are important for the 9-1-1 association. A significant fraction of the hNEIL1 nuclear foci co-localize with hRad9 foci in hydrogen peroxide treated cells. Human NEIL1 DNA glycosylase activity is significantly stimulated by hHus1, hRad1, hRad9 separately and the 9-1-1 complex. Thus, the 9-1-1 complex at the lesion sites serves as both a damage sensor to activate checkpoint control and a component of base excision repair. 相似文献
108.
该研究以拟南芥抗逆基因At1g67520为探针,利用海岛棉ESTs数据库,通过电子克隆获得海岛棉RLCK家族基因GbRLCK10,解析该基因组结构,并结合qRT-PCR技术分析该基因mRNA的组织表达特征以及在不同胁迫诱导下的表达模式,为揭示RLCK家族基因在海岛棉中的表达调控及作用机制提供理论依据。结果显示:(1)获得海岛棉类受体胞质激酶(RLCK)基因,其开放阅读框(ORF)为1 179bp,编码392个氨基酸,具有典型的Serine/Threonine结构域,属于RLCK家族,与GaRLCK10(XP_017604046.1)亲缘关系较近,命名为GbRLCK10(登录号2022184),且该基因由5个外显子和4个内含子组成。(2)实时荧光定量(qRT-PCR)检测显示,GbRLCK10基因在抗病品种‘新海21’和感病品种‘新海14’的根、茎、叶中均有表达;当黄萎病菌诱导后,GbRLCK10基因在抗病品种中对于病原菌的响应时间早于感病品种,且对黄萎病菌响应更强烈,推测该基因参与棉花对黄萎病的响应;盐(NaCl)、干旱(PEG-6000)处理‘新海21’后,GbRLCK10基因在NaCl处理下响应时间要早于PEG-6000处理,但对PEG-6000处理响应更强烈;分别用4种激素处理‘新海21’后,GbRLCK10均能被诱导表达,且在水杨酸(SA)处理后表现为先增加后下降再增加趋势,在乙烯(ET)处理后表达量为持续上升趋势,在茉莉酸甲酯(MeJA)处理后呈先升高然后下降的趋势,但GbRLCK10基因对赤霉素(GA3)响应不明显。研究表明,GbRLCK10基因具有RLCK基因家族典型特征,该基因随黄萎病菌、NaCl、干旱、激素处理时间推移而发生变化,推测GbRLCK10基因可能参与了棉花对黄萎病菌、NaCl、干旱、激素胁迫的应答反应,但其功能仍需进一步研究。 相似文献
109.
110.
This paper reports a label-free electrochemical immunosensor for the determination of aflatoxin B1 (AFB1), which is based on a gold electrode modified by a biocompatible film of carbon nanotubes/poly(diallyldimethylammoniumchloride)/Pd–Au nanoparticles (CNTs/PDDA/Pd–Au). The nanocomposite was characterized by transmission electron microscopy and the electrochemical behavior of modified electrodes was investigated by cyclic voltammetry. The CNTs/PDDA/Pd–Au nanocomposites film showed good electron transfer ability, which ensured high sensitivity to detect AFB1 in a range from 0.05 to 25 ng mL−1 with a detection limit of 0.03 ng mL−1 obtained at 3σ (where σ is the standard deviation of the blank solution, n = 10). The proposed immunosensor provides a simple tool for AFB1 detection. This strategy can be extended to any other antigen detection by using the corresponding antibodies. 相似文献