A Synchronous Co-Allocation Mechanism for Grid Computing Systems

Grid computing systems are emerging as a computing infrastructure that will enable the use of wide-area network computing systems for a variety of challenging applications. One of these is the ever increasing demand for multimedia from users engaging in a wide range of activities such as scientific research, education, commerce, and entertainment. To provide an adequate level of service to multimedia applications, it is often necessary to simultaneously allocate resources including predetermined capacities from interconnecting networks to the applications. The simultaneous allocation of resources is often referred to as co-allocation in the Grid literature. In this paper, we formally define the co-allocation problem and propose a novel scheme called synchronous queuing (SQ) for implementing co-allocation with quality of service (QoS) assurances in Grids. Unlike existing approaches, SQ does not require advance reservation capabilities at the resources. This enables an SQ-based approach to over subscribe the resources and hence improve resource utilization. The simulation studies performed to evaluate SQ indicate that it outperforms an QoS-based scheme with strict admission control by a significant margin.     

Effect of temperature on stability of marker constituents in Echinacea purpurea root formulations.

Stability of an alkamide and a phenolic phytochemical marker in a hydro-alcoholic extract of Echinacea purpurea root and a dried powder prepared by evaporation of the extract was assessed in storage for 7 months at three temperature regimes: -20, 25 and 40 degrees Celsius. In the extract, the major alkamide, dodeca-2E, 4E, 8Z, 10E/Z-tetraenoic acid isobutyl amide, was not significantly affected by storage at any of the temperatures, but cichoric acid content declined as significantly (P = 0.05) at both 25 degrees C and 40 degrees C as compared to low-temperature storage. In the powder, the major alkamide showed a significantly reduced level at 25 degrees C and 40 degrees C while cichoric acid did not decline significantly. These results suggest that more attention should be given to the effect of formulation and temperature on storage of Echinacea products.     

Cetacean mitochondrial DNA control region: sequences of all extant baleen whales and two sperm whale species

The sequence of the mitochondrial control region was determined in all 10 extant species commonly assigned to the suborder Mysticeti (baleen or whalebone whales) and to two odontocete (toothed whale) species (the sperm and the pygmy sperm whale). In the mysticetes, both the length and the sequence of the control region were very similar, with differences occurring primarily in the first approximately 160 bp of the 5' end of the L-strand of the region. There were marked differences between the mysticete and sperm whale sequences and also between the two sperm whales. The control region, less its variable portion, was used in a comparison including the 10 mysticete sequences plus the same region of an Antarctic minke whale specimen and the two sperm whales. The difference between the minke whales from the North Atlantic and the Antarctic was greater than that between any acknowledged species belonging to the same genus (Balaenoptera). The difference was similar to that between the families Balaenopteridae (rorquals) and Eschrichtiidae (gray whales). The findings suggest that the Antarctic minke whale should have a full species status, B. bonaerensis. Parsimony analysis separated the bowhead and the right whale (family Balaenidae) from all remaining mysticetes, including the pygmy right whale. The pygmy right whale is usually included in family Balaenidae. The analysis revealed a close relationship between the gray whale (family Eschrichtiidae) sequence and those of the rorquals (family Balaenopteridae). The gray whale was included in a clade together with the sei, Bryde's, fin, blue, and humpback whales. This clade was separated from the two minke whale types, which branched together.      

Cerebrospinal fluid and serum oligoclonal IgG bands in rabbits with experimental allergic encephalomyelitis

Rabbits sensitized with whole nervous tissue or myelin basic protein (MBP) plus adjuvant and developing experimental allergic encephalomyelitis (EAE) were studied for the presence of oligoclonal immunoglobulin (Ig) bands in spinal fluid and serum. Samples obtained prior to sensitization and at the time of sacrifice were concentrated and subjected to agar gel electrophoresis. Of 11 rabbits receiving whole nervous tissue and developing severe clinical signs of EAE, 7 showed new oligoclonal Ig bands in spinal fluid and in serum obtained 19 days or more after sensitization. With MBP sensitization, 2 of 6 rabbits exhibited new spinal fluid bands, while all 6 rabbits studied demonstrated serum banding. The bands were identified as IgG by immunochemical studies using peroxidase-labeled antisera and byStaph. protein A absorption. The majority of animals showed no banding in presensitization samples. The finding of oligoclonal IgG in EAE reveals yet another immunologic correlation between EAE and the human demyelinating disease, multiple sclerosis.     

Leaf-litter and changing nutrient levels in a seasonally dry tropical hardwood forest,Belize, C.A.

Summary Total above ground plant biomass in a 45 year old seasonally dry tropical hardwood forest was estimated to be approximately 56,000 kg/ha oven dry weight. Nutrients immobilized in the standing vegetation were: N, 203 kg/ha; P, 24 kg/ha; K, 234 kg/ha; Ca, 195 kg/ha; Mg, 47 kg/ha; Na, 9 kg/ha; Mn, 1 kg/ha; Cu, 0.5 kg/ha; Zn, 3 kg/ha; Fe, 4 kg/ha. Total nutrients returned each year through the litter were: N, 156 kg/ha; P, 9 kg/ha; K, 59 kg/ha; Ca, 373 kg/ha; Mg, 32 kg/ha; Na, 5 kg/ha; Mn, 1 kg/ha; Al, 21 kg/ha; Zn, 0.3 kg/ha; Fe, 9 kg/ha. Half of the nutrients immobilized in the standing vegetation were found in the leaves and are returned annually to the soil. Although litter fall is interrupted during the year, the mean nutrient content of the litter was high –5.2%.A decomposition rate of 0.48 percent per day was considered high for a seasonally dry tropical hardwood forest. Fluctuations in soil nutrient levels showed a sharp increase at the start of the rainy season. Later during the dry season nutrient levels decreased to concentrations similar to what they were just prior to the rainy season. Soil organic matter levels were very high –20% in the top 12 cm.     

Limonoids from the Meliaceae and Rutaceae reduce feeding, growth and development of Ostrinia nubilalis

Six limonoids from the Rutaceae and Meliaceae were evaluated for their effect on the European corn borer, Ostrinia nubilalis Hübner (Lepidoptera: Pyralidae). Antifeedant activity increased in the order gedunin, bussein, entandrophragmin, nomilin, cedrelone, anthothecol. When incorporated into artifical diets of neonates at 50 ppm all compounds either cuased larval mortality or growth reduction of survivors. However in a study with naive third instar larvae, only cedrelone and anthothecol were effective in reducing efficiency of conversion of ingested food at concentrations of 100 ppm or less. In sublethal trials at 10 ppm in diet, these two substances led to growth reduction of larvae and reduced female, but not male pupal weights, percent pupation, adult emergence and number of eggs per female. The results are discussed in terms of structure-activity relationships.

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Résumé On a évalué l'effet de six limonoides provenent des Rutaceae et des Meliaceae sur la pyrale du mais, Ostrinia nubilalis Hübner (Lepidoptera: Pyralidae). L'activité anti-appétante a augmenté dans l'ordre suivant: gédunine, busséine, entandrophragmine, nomiline, cédrélone, anthothecol. Lorsqu'on incorpore ces composés à un régime artificiel à raison de 50 ppm on observe soit des mortalites larvaires, soit une réduction de croissance des survivants. Cependant lors d'une étude avec des larves de 3ème âge n'ayant jamais été exposées à de telles substances, seules la cédrélone et l'anthothecol ont été effectifs, réduisant la capacité de conversion de la nourriture ingérée à des concentrations de 100 ppm ou moins. A des doses sub-létales de 10 ppm dans le régime, ces deux substances ont produit une réduction de croissance des larves, une réduction de poids des femelles mais non des mâles, une réduction du pourcentage de pupaison, de l'émergence des adultes et du nombre d'oeufs par femelle. Les résultats sont discutés en fonction des relations structure-activité.

     

TFPI1 Mediates Resistance to Doxorubicin in Breast Cancer Cells by Inducing a Hypoxic-Like Response

Thrombin and hypoxia are important players in breast cancer progression. Breast cancers often develop drug resistance, but mechanisms linking thrombin and hypoxia to drug resistance remain unresolved. Our studies using Doxorubicin (DOX) resistant MCF7 breast cancer cells reveals a mechanism linking DOX exposure with hypoxic induction of DOX resistance. Global expression changes between parental and DOX resistant MCF7 cells were examined. Westerns, Northerns and immunocytochemistry were used to validate drug resistance and differentially expressed genes. A cluster of genes involved in the anticoagulation pathway, with Tissue Factor Pathway Inhibitor 1 (TFPI1) the top hit, was identified. Plasmids overexpressing TFPI1 were utilized, and 1% O₂ was used to test the effects of hypoxia on drug resistance. Lastly, microarray datasets from patients with drug resistant breast tumors were interrogated for TFPI1 expression levels. TFPI1 protein levels were found elevated in 3 additional DOX resistant cells lines, from humans and rats, indicating evolutionarily conservation of the effect. Elevated TFPI1 in DOX resistant cells was active, as thrombin protein levels were coincidentally low. We observed elevated HIF1α protein in DOX resistant cells, and in cells with forced expression of TFPI1, suggesting TFPI1 induces HIF1α. TFPI1 also induced c-MYC, c-SRC, and HDAC2 protein, as well as DOX resistance in parental cells. Growth of cells in 1% O₂ induced elevated HIF1α, BCRP and MDR-1 protein, and these cells were resistant to DOX. Our in vitro results were consistent with in vivo patient datasets, as tumors harboring increased BCRP and MDR-1 expression also had increased TFPI1 expression. Our observations are clinically relevant indicating that DOX treatment induces an anticoagulation cascade, leading to inhibition of thrombin and the expression of HIF1α. This in turn activates a pathway leading to drug resistance.