Binuclear rhenium carbonyl nitrosyls related to dicobalt octacarbonyl and their decarbonylation products

The geometries and thermochemistry of Re₂(NO)₄(CO) _n (n?=?4, 3, 2, 1, 0) structures isovalent with the binuclear cobalt carbonyls Co₂(CO) _n+4 have been examined using density functional theory. Eight low-energy Re₂(NO)₄(CO)₄ structures, all with formal Re–Re single bonds, lie within 6 kcal mol^?1 of the global minimum. These eight structures include unbridged structures as well as structures with two bridging NO groups but no structures with bridging CO groups. Similarly, five low-energy Re₂(NO)₄(CO)₃ structures, all with formal Re=Re double bonds, lie within 6 kcal mol^?1 of the global minimum. Again these five structures include unbridged structures as well as structures with one or two bridging NO groups but no structures with bridging CO groups. The Re₂(NO)₄(CO) _n (n?=?4, 3) appear to be fluxional systems similar to the well-known Co₂(CO)₈ for which doubly bridged and unbridged structures have approximately the same energies. The lowest energy Re₂(NO)₄(CO)₂ structures have formal Re=Re double bonds including a structure with a five-electron donor bridging η²-μ-NO group. Isomeric Re₂(NO)₄(CO)₂ structures with formal Re≡Re triple bonds lie approximately ～10 kcal mol^?1 above the global minimum. For the more highly unsaturated Re₂(NO)₄(CO) and Re₂(NO)₄ systems, the lowest energy structures have formal Re≡Re triple bonds of length ～2.6 Å. Higher energy Re₂(NO)₄(CO) structures have shorter Re–Re distances of length ～2.5 Å suggesting formal quadruple bonds.

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Graphical Abstract The geometries and thermochemistry of Re₂(NO)₄(CO) _n (n?=?4, 3, 2, 1, 0) structures isovalent with the binuclear cobalt carbonyls Co₂(CO) _n+4 have been examined using density functional theory. A number of energetically closely spaced Re₂(NO)₄(CO)₄ and Re₂(NO)₄(CO)₃ structures are found, including unbridged and NO-bridged structures but no CO-bridged structures. The Re₂(NO)₄(CO) _n (n?=?2, 1, 0) systems provide examples of Re–Re multiple bonds of orders ranging from 2 to 4.

     

Transition metal doped ZnO nanoclusters for carbon monoxide detection: DFT studies

Metal doped ZnO nanomaterials have attracted considerable attention as a chemical sensor for toxic gases. Here, the electronic sensitivity of pristine and Sc-, Ti-, V-, Cr-, Mn-, and Fe-doped Zn₁₂O₁₂ nanoclusters toward CO gas is investigated using density functional theory calculations. It is found that replacing a Zn atom by a Sc or Ti atom does not change the sensitivity of cluster but doping V and Cr atoms significantly increase the sensitivity. Also, Mn, or Fe doping slightly improves the sensitivity. It is predicted that among all, the Cr-doped ZnO cluster may be the most favorable sensor for CO detection because its electrical conductivity considerably changes after the CO adsorption, thereby, generating an electrical signal. The calculated Gibbs free energy change for the adsorption of CO molecule on the Cr-doped cluster is about -51.2 kcal mol^-1 at 298.15 K and 1 atm, and the HOMO-LUMO gap of the adsorbent is changed by about 117.8 %.     

Kudi: A free open-source python library for the analysis of properties along reaction paths

With increasing computational capabilities, an ever growing amount of data is generated in computational chemistry that contains a vast amount of chemically relevant information. It is therefore imperative to create new computational tools in order to process and extract this data in a sensible way. Kudi is an open source library that aids in the extraction of chemical properties from reaction paths. The straightforward structure of Kudi makes it easy to use for users and allows for effortless implementation of new capabilities, and extension to any quantum chemistry package. A use case for Kudi is shown for the tautomerization reaction of formic acid. Kudi is available free of charge at www.github.com/stvogt/kudi     

Theoretical study on the initial reaction mechanisms of <Emphasis Type="Italic">ansa</Emphasis>-metallocene zirconium precursor on hydroxylated Si(1 0 0) surface

The initial reaction mechanisms for depositing ZrO₂ thin films using ansa-metallocene zirconium (Cp₂CMe₂)ZrMe₂ precursor were studied by density functional theory (DFT) calculations. The (Cp₂CMe₂)ZrMe₂ precursor could be absorbed on the hydroxylated Si(1 0 0) surface via physisorption. Possible reaction pathways of (Cp₂CMe₂)ZrMe₂ were proposed. For each reaction, the activation energies and reaction energies were compared, and stationary points along the reaction pathways were shown. In addition, the influence of dispersion effects on the reactions was evaluated by non-local dispersion corrected DFT calculations.     

Locating structures and evolution pathways of reconstructed rutile TiO<Subscript>2</Subscript>(011) using genetic algorithm aided density functional theory calculations

Titanium dioxide (TiO₂) is an important metal oxide that has been used in many different applications. TiO₂ has also been widely employed as a model system to study basic processes and reactions in surface chemistry and heterogeneous catalysis. In this work, we investigated the (011) surface of rutile TiO₂ by focusing on its reconstruction. Density functional theory calculations aided by a genetic algorithm based optimization scheme were performed to extensively sample the potential energy surfaces of reconstructed rutile TiO₂ structures that obey (2?×?1) periodicity. A lot of stable surface configurations were located, including the global-minimum configuration that was proposed previously. The wide variety of surface structures determined through the calculations performed in this work provide insight into the relationship between the atomic configuration of a surface and its stability. More importantly, several analytical schemes were proposed and tested to gauge the differences and similarities among various surface structures, aiding the construction of the complete pathway for the reconstruction process.     

Theoretical insight into the sensitive mechanism of multilayer-shaped cocrystal explosives: compression and slide

Multilayer-shaped compression and slide models were employed to investigate the complex sensitive mechanisms of cocrystal explosives in response to external mechanical stimuli. Here, density functional theory (DFT) calculations implementing the generalized gradient approximation (GGA) of Perdew-Burke-Ernzerhof (PBE) with the Tkatchenko-Scheffler (TS) dispersion correction were applied to a series of cocrystal explosives: diacetone diperoxide (DADP)/1,3,5-trichloro-2,4,6-trinitrobenzene (TCTNB), DADP/1,3,5-tribromo-2,4,6-trinitrobenzene (TBTNB) and DADP/1,3,5-triiodo-2,4,6-trinitrobenzene (TITNB). The results show that the GGA-PBE-TS method is suitable for calculating these cocrystal systems. Compression and slide models illustrate well the sensitive mechanism of layer-shaped cocrystals of DADP/TCTNB and DADP/TITNB, in accordance with the results from electrostatic potentials and free space per molecule in cocrystal lattice analyses. DADP/TCTNB and DADP/TBTNB prefer sliding along a diagonal direction on the a?c face and generating strong intermolecular repulsions, compared to DADP/TITNB, which slides parallel to the b?c face. The impact sensitivity of DADP/TBTNB is predicted to be the same as that of DADP/TCTNB, and the impact sensitivity of DADP/TBTNB may be slightly more insensitive than that of DADP and much more sensitive than that of TBTNB.

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Graphical Abstract Theoretical insights into the sensitive mechanism of multilayer-shaped cocrystal explosives: compression and slide

     

Theoretical study of the interaction between molecular oxygen and tetraaza macrocyclic manganese complexes

Theoretical chemistry calculations using the Density Functional Theory (DFT) were carried out to understand the interaction between oxygen (O₂) and MnN₄ type manganese-based complexes during the formation of MnN₄-O₂ adducts. In order to understand how this interaction is affected by different macrocyclic ligands, O₂ was bonded to manganese-porphyrin (MnP), manganese-octamethylporphyrin (MnOMP), manganese-tetraaza[14]annulene (MnTAA), manganese-dibenzo [b,i] [1, 4, 8, 11]-tetraaza [14] annulene (MnDBTAA), manganese-2,3,9,10-tetramethyl-1,4,8,11-tetraazacyclotetradeca-1,3,8,10-tetraene ([(tim)Mn]²⁺), and manganese-2,3,9,10-tetraphenyl-1,4,8,11-tetraazacyclotetradeca-1,3,8,10-tetraene ([(ph-tim)Mn]²⁺). The binding and activation of the oxygen molecule was facilitated by an increasing trend in the O-O bond lengths and a decreasing one in the O-O vibrational frequency, with preference for the O₂ side-on interaction among MnN₄ macrocycles. The catalytic activities of the MnN₄ complexes toward the O₂ binding process increased in the following order: [(ph-tim)Mn]²⁺?<?MnP?<?MnOMP?<?MnDBTAA?<?MnTAA?<?[(tim)Mn]²⁺. Therefore, it was concluded that the [(tim)Mn]²⁺complex was the most active for the binding and activation of molecular oxygen.