Species-specific alleles at a <Emphasis Type="Italic">β-</Emphasis>tubulin gene show significant associations with leaf morphological variation within <Emphasis Type="Italic">Quercus petraea</Emphasis> and <Emphasis Type="Italic">Q. robur</Emphasis> populations

Quercus petraea and Q. robur are largely sympatric oak species in western and central Europe and known for their intensive genetic exchange which has made the discovery of species-diagnostic markers a huge challenge. Various natural white oak populations (Q. petraea/Q. robur including mixed stands) were investigated for their variability and differentiation patterns at a β-tubulin gene (qutub8) in a European-wide survey. This gene was chosen as a possible candidate among loci subjected to selection and maintaining integrity between species. Two frequent alleles depicted as indels within qutub8’s first intron showed remarkably high interspecific genetic differentiation, with Weir and Cockerham’s theta per allele values ranging from 0.17 to 0.30 for one allele and from 0.04 to 0.19 for the other allele in such mixed oak stands where the multi-allelic qutub8 locus showed significant interspecific F _ST . For three mixed stands, qutub8’s F _ST significantly departed from the expected neutral differentiation patterns (F _ST ranging from 0.063 to 0.080 for this multi-allelic marker) and thus could be influenced by selection. Significant associations were found between genotypic variation and leaf dimensions as well as leaf structure patterns, after having accounted for species and stand effects. Qutub8 represents a locus that exhibits significant species differentiation and is linked to morphological discriminant traits. Consequently, qutub8 likely contributes to species divergence within the European white oak complex.     

Distribution of N<Superscript>6</Superscript>-Methyladenine in DNA of T2 Phage and its Host <Emphasis Type="Italic">Escherichia coli</Emphasis> B

N⁶-METHYLADENINE (6-MeAde) and 5-methylcytosine occur as minor bases in bacterial and phage DNA^1–7 and seem to result from the selective methylation of adenine and cytosine residues by specific DNA methylases⁸. Methylation is the final stage in DNA synthesis and is essential for the phenomenon of host modification of phages^9–11; it is one of the mechanisms controlling DNA replication in the cell^{12, 13}. A study of the distribution of minor bases in DNA is therefore important not only for the elucidation of the specificity and mechanism of action of DNA methylases but also for an understanding of the purpose of this methylation. We believe that in Escherichia coli, DNA methylase exerts its action on adenine residues in chain terminating triplets: 6-MeAde may serve as a signal for gene termination in this system.     

Evaluation of interclonal elemental-profile variation in Sitka spruce seed

Elemental profiles of seeds collected from four ramets in each of 10 clones growing in a 12-year-old Sitka spruce [Picea sitchensis (Bong.) Carr.] seed orchard were determined by X-ray energy-dispersive spectrometry. The data collected from the resultant spectra were used to assess differences among clones and among ramets of a single clone and to determine the mechanism governing the observed differences. The spectra were shown to be different from each other and were specific to each clone. Results from analyses of variance (ANOVA) indicated that the clonal differences accounted for the majority of variation (77%), while among ramets within clones differences rated second (17%). Broad-sense heritability estimates were highly significant and ranged from 0.46 to 0.95. The multivariate analyses conducted on the data further emphasized the results obtained from ANOVA and a high degree of success (90%) was achieved in classifying seed samples to their source clone. Results support the hypothesis that the elemental uptake and assimilation of minerals of Sitka spruce is under genetic control.     

Effective number of pollen parents in clonal seed orchards

Summary A method for quantifying mating behavior in clonal seed orchards of forest tree species is presented. It involves the estimation of effective numbers of pollen parents from seed samples collected from individual ramets in such orchards. These effective numbers are variance effective numbers for populations of male gametes that are successful in uniting with ovules to produce viable seed. Three such effective numbers are defined for clonal seed orchards:N _p (a) for male gamete populations for ramets within clones,N _p (b) for male gamete populations for clones, andN _p (c) for male gamete populations for entire orchards. Estimators for these effective numbers and for standardized variances of allele frequencies in the male gametic populations are presented. Expressions are also given for the confidence intervals for each of the three effective numbers. Estimates of these parameters and the corresponding confidence intervals for two seed orchards are presented and interpreted.     

Classifying seedlots of Picea sitchensis and P. glauca in zones of introgression using restriction analysis of chloroplast DNA

Summary Chloroplast DNA (cpDNA) restriction analysis was used to classify five reforestation seedlots as to species. The material included two Sitka spruce (Picea sitchensis (Bong.) Carr.), one white spruce (P. glauca (Moench) Voss) from interior British Columbia, and two putative hybrid seedlots from the coast-interior introgression zone in British Columbia. The cpDNA patterns generated by Bam-HI and Bc1-I from individual trees of Sitka spruce, white spruce, western white spruce (P. glauca var. albertiana (S. Brown)), and Engelmann spruce (P. engelmanni (Parry)) were species-specific. They were used as reference patterns for comparisons. In addition, two controlled crosses between white and Sitka spruce were analyzed to demonstrate the paternal inheritance of cpDNA in spruces. The cpDNA restriction patterns for the five seedlots were obtained from composite samples of seedlings from each lot and compared to the typical cpDNA patterns of each species. Restriction patterns for the two Sitka spruce seedlots agreed with those from the Sitka spruce tree, while patterns for the white spruce seedlots from British Columbia agreed with those from the white spruce tree, lacking evidence of any Engelmann spruce component in the sample. On the other hand, one putative hybrid seedlot showed cpDNA patterns similar to white spruce while the other showed fragments unique to both Sitka and white spruce, indicating that this was a hybrid seedlot. The analysis of cpDNA restriction polymorphism has proven to be an effective tool for classifying seedlots in regions of introgression. To our knowledge, these results provide the first demonstration of the use of cpDNA analysis for solving practical forestry problems.     

环渤海红条毛肤石鳖种群遗传多样性研究

以线粒体细胞色素c氧化酶亚基Ⅰ(COⅠ)为遗传标记分析了环渤海红条毛肤石鳖Acanthochiton rubrolineatus 9个种群的遗传多样性及遗传结构。126只个体经PCR扩增测序获得654 bp的COⅠ基因序列,41个多态位点产生29种单倍型,单倍型多样性为0. 899±0. 013,核苷酸多样性为0. 013 3±0. 006 8。种群遗传多样性与纬度(r=-0. 808,P <0. 05)及年平均温度变异系数(r=-0. 795,P <0. 05)呈显著负相关,表明红条毛肤石鳖适应低纬度及温度稳定的海洋环境。分子方差分析表明,遗传变异主要发生在种群内(83. 26%,P <0. 001)。系统发生树与单倍型网络图没有呈现明显的谱系地理结构。种群历史动态结果显示,红条毛肤石鳖在早更新世晚期(第二温暖期)间冰期经历了种群扩张。     

西藏飞蝗九个地理种群群居型形态特征的数量分析

为探讨群居型西藏飞蝗Locusta migratoria tibetensis Chen地理种群数量性状关系,从青藏高原9个地区采集到不同地理种群,以数值分析对形态指标及其比值进行了分析。结果表明,前翅长度(E)、后足股节长度(F)、头宽(C)形态指标和E/F、F/C两个比值可以作为分析种群关系的参数。聚类分析和主成分分析结果相似,能够较好地说明青藏高原9个种群的地理变异和种群相互关系,9个地理种群可以分三个类群,即第Ⅰ类群包括百巴(BB)与八美(BM)种群;第Ⅱ类群包括普兰(PL)、扎囊(ZN)、洛须(LX)种群;第Ⅲ类群包括噶尔(GE)、香孜(XZ)、日土(RT)、那嘎(NG)种群。     

Genealogy and palaeodrainage basins in Yunnan Province: phylogeography of the Yunnan spiny frog,Nanorana yunnanensis (Dicroglossidae)

Historical drainage patterns adjacent to the Qinghai‐Tibetan Plateau differed markedly from those of today. We examined the relationship between drainage history and geographic patterns of genetic variation in the Yunnan spiny frog, Nanorana yunnanensis, using approximately 981 base pairs of mitochondrial DNA partial sequences from protein‐coding genes ND1 and ND2, and intervening areas including complete tRNA^Ile, tRNA^Gln and tRNA^Met. Two null hypotheses were tested: (i) that genetic patterns do not correspond to the development of drainage systems and (ii) that populations had been stable and not experienced population expansion, bottlenecking and selection. Genealogical analyses identified three, major, well‐supported maternal lineages, each of which had two sublineages. These divergent lineages were completely concordant with six geographical regions. Genetic structure and divergence were strongly congruent with historical rather than contemporary drainage patterns. Most lineages and sublineages were formed via population fragmentation during the rearrangement of paleodrainage basins in the Early Pliocene and Early Pleistocene. Sympatric lineages occurred only in localities at the boundaries of major drainages, likely reflecting secondary contact of previously allopatric populations. Extensive population expansion probably occurred early in the Middle Pleistocene accompanying dramatic climatic oscillations.     

Is linear deployment of clones optimal under different clonal outcrossing contributions in seed orchards?

Self-pollen seldom results in vital genotypes and can thus be regarded as unimportant. Large-sized clones (clones with many ramets) are more exposed to self-pollen and spread more self-pollen and thus contribute relatively less than small-sized clones. The size of clones required to maximize genetic gain at given diversity, considering that only outcrossing contributes to successful gametes, was derived for tested clones intended to establish a Norway spruce (Picea abies) seed orchard. The derived optimal deployment was compared with linear deployment according to Lindgren and Matheson (Silvae Genet 35:173–177, 1986), where the size of a clone is deployed proportional to its breeding value. The study covered a range of effective numbers between 5 and 50. The results suggest that linear deployment is a good approximation to optimal deployment when only outcrossing is considered. The difference between the two strategies is decreased by increasing clone number and is negligible except at low effective numbers.