Die Jugendmause europ?ischer und afrikanischer Schwarzkehlchen (Saxicola torquata rubicula undaxillaris) sowie von F1-Hybriden

Summary In a constant 12 h, 50 min equatorial photoperiod postjuvenile moult started earlier and lasted shorter in European stonechats than in their African conspecifics. F₁-hybrids showed an intermediary time course of moult indicating that the differences found between these two subspecies are genetically determined.     

Der innere Kalender tropischer Vögel

Im Jahre 1954 veröffentlichte der amerikanische Ornithologe James Chapin unter dem Titel ?The calendar of the wideawake fair”? die Ergebnisse einer elfjährigen Untersuchung an der Ruß-Seeschwalbe (Sterna fuscata) auf der tropischen Atlantikinsel Ascension. Wie auf vielen anderen Inseln versammeln sich diese Seeschwalben auch auf Ascension in regelmäßigen Intervallen zum gemeinsamen Brüten. Die Besonderheit der Vögel auf Ascension besteht darin, daß der Abstand zwischen aufeinanderfolgenden Fortpflanzungszeiten nicht wie sonst üblich ein Jahr beträgt, sondern nur knapp zehn Monate. Die Vögel brüten also in jedem Jahr rund zwei Monate früher als im Vorjahr. Ähnliche Fortpflanzungsrhythmen mit Periodendauern zwischen acht und elf Monaten sind später auch für eine Reihe anderer tropischer Seevögel, so etwa für die Gabelschwanzmöve (Creagrus furcatus) auf den Galapagosinseln, nachgewiesen worden. Zehnmonatige Brutrhythmen kommen gelegentlich auch bei landlebenden tropischen Vögeln vor, etwa bei der auf Borneo beheimateten Rotflügeltimalie (Stachyris erythroptera), die wie die Ruß-Seeschwalbe im zehnmonatigen Rhythmus brütet und mausert, oder bei manchen Paaren des Fledermausaars (Machaerhamphus alcinus).     

Biological systems modeling and analysis: a biomolecular technique of the twenty-first century.

It is proposed that computational systems biology should be considered a biomolecular technique of the twenty-first century, because it complements experimental biology and bioinformatics in unique ways that will eventually lead to insights and a depth of understanding not achievable without systems approaches. This article begins with a summary of traditional and novel modeling techniques. In the second part, it proposes concept map modeling as a useful link between experimental biology and biological systems modeling and analysis. Concept map modeling requires the collaboration between biologist and modeler. The biologist designs a regulated connectivity diagram of processes comprising a biological system and also provides semi-quantitative information on stimuli and measured or expected responses of the system. The modeler converts this information through methods of forward and inverse modeling into a mathematical construct that can be used for simulations and to generate and test new hypotheses. The biologist and the modeler collaboratively interpret the results and devise improved concept maps. The third part of the article describes software, BST-Box, supporting the various modeling activities.     

Modern bivalve shell assemblages on three atolls offshore Belize (Central America,Caribbean Sea)

The Belize atolls—Glovers Reef, Lighthouse Reef and Turneffe Islands—show differences in geomorphology, lagoonal depth, bottom sediment, growth of mangroves and sea-grass, exposure to waves and currents as well as in their sedimentation rates and their age. Bivalve shell assemblages in lagoonal areas reflect these geomorphological differences. On each atoll, 32 to 44 recent sediment samples were taken (total number of samples 111) and bivalve shells subsequently identified. The resulting database (32,122 bivalve shells in total) was analysed using Q-mode cluster analyses. Both the distribution of species characteristic of different lagoonal habitats and the distribution of bivalves with different life and feeding habits were investigated. Epifaunal suspension feeders were found particularly on hard-bottom along the reef-crests or clinging to mangrove roots. Infaunal suspension feeders show a more diverse distribution. Deeper lagoonal parts and areas with mangrove growth are often inhabited by chemosymbiont-carrying bivalves, indicating locations of reduced sediment. Deep burrowing detritus feeders are very abundant in shallow-water areas with moderate to high water agitation and were seldom found in Halimeda-rich sediments.     

The potential for signal integration and processing in interacting MAP kinase cascades

The cellular response to environmental stimuli requires biochemical information processing through which sensory inputs and cellular status are integrated and translated into appropriate responses by way of interacting networks of enzymes. One such network, the mitogen-activated protein (MAP) kinase cascade is a highly conserved signal transduction module that propagates signals from cell surface receptors to various cytosolic and nuclear targets by way of a phosphorylation cascade. We have investigated the potential for signal processing within a network of interacting feed-forward kinase cascades typified by the MAP kinase cascade. A genetic algorithm was used to search for sets of kinetic parameters demonstrating representative key input-output patterns of interest. We discuss two of the networks identified in our study, one implementing the exclusive-or function (XOR) and another implementing what we refer to as an in-band detector (IBD) or two-sided threshold. These examples confirm the potential for logic and amplitude-dependent signal processing in interacting MAP kinase cascades demonstrating limited cross-talk. Specifically, the XOR function allows the network to respond to either one, but not both signals simultaneously, while the IBD permits the network to respond exclusively to signals within a given range of strength, and to suppress signals below as well as above this range. The solution to the XOR problem is interesting in that it requires only two interacting pathways, crosstalk at only one layer, and no feedback or explicit inhibition. These types of responses are not only biologically relevant but constitute signal processing modules that can be combined to create other logical functions and that, in contrast to amplification, cannot be achieved with a single cascade or with two non-interacting cascades. Our computational results revealed surprising similarities between experimental data describing the JNK/MKK4/MKK7 pathway and the solution for the IBD that evolved from the genetic algorithm. The evolved IBD not only exhibited the required non-monotonic signal strength-response, but also demonstrated transient and sustained responses that properly reflected the input signal strength, dependence on both of the MAPKKs for signaling, phosphorylation site preferences by each of the MAPKKs, and both activation and inhibition resulting from the overexpression of one of the MAPKKs.     

Abandoning aggression but maintaining self-nonself discrimination as a first stage in ant supercolony formation

An ant supercolony is a very large entity with very many queens. Although normal colonies of small extent and few queens remain distinct, a supercolony is integrated harmoniously over a large area [1, 2]. The lack of aggression is advantageous: Aggression is costly, involving direct and indirect losses and recognition errors [3, 4]. Indeed, supercolonial ants are among the ecologically most successful organisms [5-7]. But how supercolonies arise remains mysterious [1, 2, 8]. Suggestions include that reduced within-colony relatedness or reduced self-nonself discrimination would foster supercolony formation [1, 2, 5, 7, 9-12]. However, one risks confusing correlation and causality in deducing the evolution from distinct colonies to supercolonies when observing established supercolonies. It might help to follow up observations of another lack of aggression, that between single-queened colonies in some ant species. We show that the single-queened Lasius austriacus lacks aggression between colonies and occasionally integrates workers across colonies but maintains high within-colony relatedness and self-nonself discrimination. Provided that the ecological framework permits, reduced aggression might prove adaptive for any ant colony irrespective of within-colony relatedness. Abandoning aggression while maintaining discrimination might be a first stage in supercolony formation. This adds to the emphasis of ecology as central to the evolution of cooperation in general [13].     

Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

We describe a chemical proteomics approach to profile the interaction of small molecules with hundreds of endogenously expressed protein kinases and purine-binding proteins. This subproteome is captured by immobilized nonselective kinase inhibitors (kinobeads), and the bound proteins are quantified in parallel by mass spectrometry using isobaric tags for relative and absolute quantification (iTRAQ). By measuring the competition with the affinity matrix, we assess the binding of drugs to their targets in cell lysates and in cells. By mapping drug-induced changes in the phosphorylation state of the captured proteome, we also analyze signaling pathways downstream of target kinases. Quantitative profiling of the drugs imatinib (Gleevec), dasatinib (Sprycel) and bosutinib in K562 cells confirms known targets including ABL and SRC family kinases and identifies the receptor tyrosine kinase DDR1 and the oxidoreductase NQO2 as novel targets of imatinib. The data suggest that our approach is a valuable tool for drug discovery.     

Ligands and signaling of the G-protein-coupled receptor GPR14, expressed in human kidney cells.

Activation of the urotensin II (U-II) receptor, GPR14, leads to an increase in Ca(2+), activation of phospholipase A(2) (PLA(2)) and an increase in arachidonic acid. The signaling pathway for guanylin peptides in the kidney involves an unknown G-protein coupled receptor which activates PLA(2) and increases arachidonic acid as well. To test if guanylin peptides could be, as U-II, agonists for the GPR14 receptor in the kidney, we used HEK293 and CHO cells transfected with hGPR14 (HEK293+hGPR14, CHO+hGPR14, respectively). Effects of guanylin peptides and U-II were studied by slow-whole-cell patch-clamp analysis and microfluorimetric measurements of intracellular Ca(2+). Guanylin peptides and U-II depolarized HEK293+hGPR14 significantly more than wild type cells. These effects were inhibited in the presence of Ba(2+) or PLA(2) inhibition (AACOCF(3)), suggesting that guanylin peptides and U-II increase arachidonic acid and inhibit ROMK channels in these cells. However, only U-II was capable to increase the cellular Ca(2+), suggesting different mechanism of GPR14 activation by guanylin peptides and U-II. This signaling pathway of U-II involves PKC, because U-II effects in HEK293+hGPR14 cells were inhibited by calphostin C. Guanylin peptides activate PLA(2) and inhibit ROMK channels in HEK293 cells transfected with the human GPR14 receptor. Since GPR14 is present in mouse and human CCD it is a candidate for the guanylate cyclase independent receptor for guanylin peptides.