Use of monoacetyl-4-hydroxyaminoquinoline 1-oxide to probe contacts between guanines and protein in the minor and major grooves of DNA. Interaction of Escherichia coli integration host factor with its recognition site in the early promoter and transposition enhancer of bacteriophage Mu.

Monoacetyl-4-hydroxyaminoquinoline 1-oxide (Ac-HAQO) reacts with DNA to form adducts at the C8- and N2-positions of guanine and with the N6-position of adenine. Only the N2-guanine adduct blocks the 3'-5' exonuclease action of phage T4 DNA polymerase. Piperidine treatment cleaves the DNA at sites bearing C8-guanine adducts. The N2-position of guanine lies in the minor groove of DNA, whereas the C8-position of guanine occupies the major groove. We have taken advantage of these characteristics to employ Ac-HAQO in conjunction with either T4 DNA polymerase or piperidine in a footprinting technique to probe the interaction of the Escherichia coli integration host factor (IHF) with its binding site. We show that when IHF binds to its recognition site both the N2- and C8-positions of guanines are protected from modification by AcHAQO. In addition, the binding of IHF to DNA was prevented when either an N2- or a C8-AQO adduct was present in the binding site. When dimethylsulfate was used as the footprinting reagent, IHF protected against methylation of the N3 position of adenine in the minor groove but not the N7 position of guanine in the major groove. The difference in results obtained with the two reagents is ascribed to their relative sizes. Both DMS and AcHAQO are excluded by IHF from the minor groove, but only the larger AcHAQO molecule is excluded from the major groove.     

In vitro biotechnological advancements in Malabar nut (Adhatoda vasica Nees): Achievements,status and prospects

Adhatoda vasica Nees, belonging to family Acanthaceae, is a well-known medicinal plant. It is endorsed for its pyrroloquinazoline alkaloids and its derivatives, such as vasicine and vasicinone. Germinating A. vasica seeds is a tedious task; on that account, vegetative propagation is the preferred method for its multiplication. For rapid and large-scale multiplication, germplasm conservation as well as secondary metabolites production, in vitro culture of A. vasica was preferred over conventional propagation by several researchers; however, some major applications of this tissue culture technique are still awaiting to undergo extensive research. The present review, for the first time, illustrates all the major achievements associated with in vitro regeneration of A. vasica, reported till date and highlights the future prospects.     

Ageing of chloroplasts in vitro — III. Comparison of the effects of ageing in vitro and senescence on the red absorption band and primary photochemical reactions of sunflower chloroplasts

A comparison of changes in absorption properties and electron transport activities of chloroplasts ageing in vivo and in vitro is made. Chloroplasts from sunflower leaves senescing in vivo during 7 days in dark do not show a blue shift of the red absorption band; in contrast, the shift becomes apparent within 24 h of in vitro ageing of isolated organelles. Photosynthetic activity by chloroplasts is lost much faster during in vitro than in vivo ageing. During in vitro ageing, the rate of degradation of thylakoid membranes as characterised by the shift in the red absorption band and loss in Hill reaction is further accelerated in chloroplasts isolated from dark-induced senescing leaves, suggesting the influence of the in vivo status of the chloroplasts on their in vitro stability.Abbreviations DCPIP 2,6-dichlorophenol indophenol - PSI Photosystem I - Chl Chlorophyll     

Life cycle assessment of densified wheat straw pellets in the Canadian Prairies

Purpose  

Densification, a process used to manufacture pellets in order to increase biomass bulk density, plays a crucial role in the economics of biomass utilization. The Canadian Prairies produce large quantities of agricultural residues each year, in particular wheat straw. This study performs life cycle assessment of wheat straw pellets by evaluating environmental effects of the entire pellet production system comprising feedstock production (on-farm wheat straw production), harvesting, baling, transportation, and the industrial processing involving drying, grinding, pelletizing, and packing in the densification plant. The effects of each process on the environmental performance of wheat straw pellets were investigated.     

High ethylene production slackens seed filling in compact panicled rice cultivar

Change of plant type in rice resulting in increased compactness of the panicle, allows space for accommodation of a larger number of spikelets, but grain yield does not increase proportionately because of limitations in grain filling. The objective of this study was to evaluate potential causes of poor filling of spikelets by comparing the physiological processes that influence source and sink activities between a compact- (OR-1920-7) and a loose-panicled (Lalat) rice cultivars growing in the open field conditions in the farm of Regional Research and Technology Transfer Station, Orissa University of Agriculture and Technology, Chiplima, India during dry season of 2007. Although grain number per unit length of the branches was higher in the compact-panicled cultivar than the loose-panicled cultivar, average grain weight was lower on the primary and secondary branches at top, middle and basal positions of the panicle in the former compared to the corresponding positions of the panicle in the latter. Compared to Lalat, ethylene production rate was considerably higher in the boot of the flag leaf sheath of OR-1920-7 during the pre-anthesis period. Ethylene evolution rate correlated negatively with growth and cell division rates and starch concentration of the juvenile endosperm. Because spikelet growth was slower in OR-1920-7 than in Lalat, unused carbohydrates accumulated in the endosperm. The stomatal conductance of the flag leaf during this period was also lower in the former than that of the latter and it correlated negatively with ethylene evolution rate of the boot. It is concluded that high ethylene production slackened grain filling of compact-panicled rice cultivar OR-1920-7 because of its adverse influence on both source and sink activities.     

A comprehensive analysis of Trypanosoma brucei mitochondrial proteome

The composition of the large, single, mitochondrion (mt) of Trypanosoma brucei was characterized by MS (2‐D LC‐MS/MS and gel‐LC‐MS/MS) analyses. A total of 2897 proteins representing a substantial proportion of procyclic form cellular proteome were identified, which confirmed the validity of the vast majority of gene predictions. The data also showed that the genes annotated as hypothetical (species specific) were overpredicted and that virtually all genes annotated as hypothetical, unlikely are not expressed. By comparing the MS data with genome sequence, 40 genes were identified that were not previously predicted. The data are placed in a publicly available web‐based database (www.TrypsProteome.org). The total mitochondrial proteome is estimated at 1008 proteins, with 401, 196, and 283 assigned to the mt with high, moderate, and lower confidence, respectively. The remaining mitochondrial proteins were estimated by statistical methods although individual assignments could not be made. The identified proteins have predicted roles in macromolecular, metabolic, energy generating, and transport processes providing a comprehensive profile of the protein content and function of the T. brucei mt.