Predictive modelling of freshwater fish as a biomonitoring tool in New Zealand

SUMMARY 1. A challenge has been issued to ecologists to find quantitative ecological relationships that have predictive power. A predictive approach has been successful when applied to biomonitoring using stream invertebrates with the River Invertebrate Prediction and Classification System (RIVPACS). This approach, to our knowledge, has not been applied to freshwater fish assemblages.
2. This paper describes the initial results of the application of a regional predictive model of freshwater fish occurrence using 200 reference sites sampled in the Manawatu–Wanganui region of New Zealand over late summer/autumn 2000. In brief (i) sites were classified into biotic groups (ii) the physical and chemical characteristics that best describe variation among these groups were determined and (iii) the relationship between these environmental variables and fish communities was used to predict the fauna expected at a site.
3. Reference sites clustered into six groups based on fish density and community composition. Using 14 physical variables least influenced by human activities, a discriminant model allocated 70% of sites to the correct biological classification group. The variables that best separated the site groups were mainly large-scale variables including altitude, distance from the coast, lotic ecoregion and map co-ordinates.
4. The model was further validated by randomly removing 20% of the sites, rebuilding the model and then determining the number of removed sites correctly allocated to their original biotic groups using environmental variables. Using this process 67% of the removed sites were correctly reassigned to the six predetermined groups.
5. A further 30 sites were used to determine the ability of the model to detect anthropogenic impact. The observed over expected taxa ( O / E ) ratios were significantly lower than the reference site O / E ratios, indicating a response of the fish assemblages to the known stressors.     

Further Evidence for the Relationship between Light-Induced Changes of Plasmalemma Transport and Transthylakoid Proton Uptake

The simultaneous measurement of the induction curves of chlorophyllfluorescence, its responses to saturating flashes, light-scatteringat 532 nm, and plasmalemma voltage supports previous findings(Hansen, Kolbowski, and Dau, 1987), that light-induced uptakeof protons into the inner thylakoid space causes the rapid (5to 20 s) light-induced depolarization at the plasmalemma viasubstrate depletion of the electrogenic H⁺-pump. These conclusionsare based on kinetic studies which enable the separation ofindividual components in complex signals by means of their assignmentto different time-constants. In contrast to the previous investigation,binary noise was used for modulation of the actinic light. Thenew input signal not only increased the reliability of the previousresults obtained by sine-waves, but also led to the detectionof three additional time-constants. One of these is probablyrelated to the action of light on the potassium channel of theplasmalemma. The others are assigned to the quencher Q and toa still unknown process. Key words: Chlorophyll fluorescence, plasmalemma potential, proton fluxes, noise, scattering, spinach, state-transitions, thylakoid membrane     

Early effects of excess cadmium uptake in Phaseolus vulgaris

Abstract. Seedlings of Phaseolus vulgaris were exposed to solutions containing Cd²⁺ in the range 0 to 1 molm⁻³. Ethylene formation started following 3 h of exposure to 10⁻², 10⁻¹ and 1 mol m⁻³ Cd²⁺, peaked at 18 h and returned to a relatively low rate after 24 h. Cadmium-induced ethylene formation depended on the formation of 1-aminocyclopropane-1-carboxylic acid (ACC). Aminoethoxyvinylglycine (AVG, 0.1 mol m⁻³) inhibited ACC accumulation and ethylene production during exposure to 0.2 mol m⁻³ Cd²⁺.
Activity of soluble and ionically-bound peroxidase increased after 18 h of exposure to Cd²⁺ concentrations above 10⁻³ mol m⁻³ due to an increase in activity of cathodic isoperoxidases. Stimulation of soluble and ionically-bound peroxidase by 0.2 mol m⁻³ Cd²⁺ was reduced in the presence of 0.1 mol m⁻³ AVG.
Accumulation of soluble and insoluble ('ligninlike') phenolics was found in plants exposed to Cd²⁺ (10⁻² mol m⁻³ or above) in the presence or absence of AVG. Deposition of insoluble (autofluorescing) material occurred in cell walls around vessels and was associated with reduced expansion and water content of leaves.     

Involvement of respiratory processes in the transient knockout of net CO2 uptake in Mimosa pudica upon heat stimulation

Leaf photosynthesis of the sensitive plant Mimosa pudica displays a transient knockout in response to electrical signals induced by heat stimulation. This study aims at clarifying the underlying mechanisms, in particular, the involvement of respiration. To this end, leaf gas exchange and light reactions of photosynthesis were assessed under atmospheric conditions largely eliminating photorespiration by either elevated atmospheric CO₂ or lowered O₂ concentration (i.e. 2000 μmol mol^?1 or 1%, respectively). In addition, leaf gas exchange was studied in the absence of light. Under darkness, heat stimulation caused a transient increase of respiratory CO₂ release simultaneously with stomatal opening, hence reflecting direct involvement of respiratory stimulation in the drop of the net CO₂ uptake rate. However, persistence of the transient decline in net CO₂ uptake rate under illumination and elevated CO₂ or 1% O₂ makes it unlikely that photorespiration is the metabolic origin of the respiratory CO₂ release. In conclusion, the transient knockout of net CO₂ uptake is at least partially attributed to an increased CO₂ release through mitochondrial respiration as stimulated by electrical signals. Putative CO₂ limitation of Rubisco due to decreased activity of carbonic anhydrase was ruled out as the photosynthesis effect was not prevented by elevated CO₂.     

Genome-wide annotation and functional identification of aphid GLUT-like sugar transporters

Background

Phloem feeding insects, such as aphids, feed almost continuously on plant phloem sap, a liquid diet that contains high concentrations of sucrose (a disaccharide comprising of glucose and fructose). To access the available carbon, aphids hydrolyze sucrose in the gut lumen and transport its constituent monosaccharides, glucose and fructose. Although sugar transport plays a critical role in aphid nutrition, the molecular basis of sugar transport in aphids, and more generally across all insects, remains poorly characterized. Here, using the latest release of the pea aphid, Acyrthosiphon pisum, genome we provide an updated gene annotation and expression profile of putative sugar transporters. Finally, gut expressed sugar transporters are functionally expressed in yeast and screened for glucose and fructose transport activity.

Results

In this study, using a de novo approach, we identified 19 sugar porter (SP) family transporters in the A. pisum genome. Gene expression analysis, based on 214, 834 A. pisum expressed sequence tags, supports 17 sugar porter family transporters being actively expressed in adult female aphids. Further analysis, using quantitative PCR identifies 4 transporters, A. pisum sugar transporter 1, 3, 4 and 9 (ApST1, ApST3, ApST4 and ApST9) as highly expressed and/or enriched in gut tissue. When expressed in a Saccharomyces cerevisiae hexose transporter deletion mutant (strain EBY.VW4000), only ApST3 (previously characterized) and ApST4 (reported here) transport glucose and fructose resulting in functional rescue of the yeast mutant. Here we characterize ApST4, a 491 amino acid protein, with 12 predicted transmembrane regions, as a facilitative glucose/fructose transporter. Finally, phylogenetic reconstruction reveals that ApST4, and related, as yet uncharacterized insect transporters are phylogenetically closely related to human GLUT (SLC2A) class I facilitative glucose/fructose transporters.

Conclusions

The gut enhanced expression of ApST4, and the transport specificity of its product is consistent with ApST4 functioning as a gut glucose/fructose transporter. Here, we hypothesize that both ApST3 (reported previously) and ApST4 (reported here) function at the gut interface to import glucose and fructose from the gut lumen.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-647) contains supplementary material, which is available to authorized users.     

ISOLATED GRAPTOLITES FROM THE LITUIGRAPTUS CONVOLUTUS BIOZONE (SILURIAN, LLANDOVERY) OF DALARNA, SWEDEN

Abstract:  Isolated material of 13 graptolite species from the Aeronian (middle Llandovery) Lituigraptus convolutus Biozone is described. A considerable amount of late astogenetic peridermal thickening is revealed in Normalograptus scalaris and Rivagraptus bellulus . As a result, in the former, thecal morphology is modified from climacograptid to pseudoglyptograptid; in both species, the virgella becomes robust. In Metaclimacograptus minimus and Me. sp., it is shown that the dorsal metathecal wall forms the genicular hood, whereas in N. nikolayevi , the infragenicular wall of the succeeding theca forms the distal thecal apertural margin. Pribylograptus argutus exhibits typical pribylograptid thecae along the length of the available rhabdosome fragments. Characters differentiating Campograptus lobiferus from C. harpago include the greater dorso-ventral width and more rapid increase in dorso-ventral width of the former and the greater recurving of distal thecae and presence of thecal spines/processes on all thecae of the latter. Lituigraptus convolutus has rastritiform thecae proximally; thecal apertures throughout the rhabdosome are crescentic and laterally expanded.     

Storage and turnover of carbon in grassland soils along an elevation gradient in the Swiss Alps

Amount, composition, and rate of turnover of soil organic carbon (SOC) in mountainous cold regions is largely unknown, making predictions of future responses of this carbon (C) to changing environmental conditions uncertain. We hypothesized increasing amounts and declining turnover times of soil organic matter (SOM) under permanent grassland with increasing elevation and decreasing temperature. Samples from an irrigated transect in the Swiss Alps (880 to 2200 m elevation, mean annual temperatures +8.9 to +0.9 °C) were analyzed. Soil C stocks ranged from 49 to 96 t C ha⁻¹ (0–20 cm) and were not related to elevation, though the highest site stored least C. Particulate organic carbon (POC) increased significantly with elevation and accounted for > 80% of the total soil C at 2200 m (0–5 cm). Mean residence times (MRTs) of POC computed by means of radiocarbon dating were in the order of years to decades and were positively related to elevation in the topsoil. At higher elevations, the estimated total C flux through the soil profile mainly depended on this fraction. MRT of mineral-associated matter ranged from decades to centuries and was not systematically related to elevation, but positively related to the soil mineral surface area and it increased with soil depth. Turnover rates from simulations with the soil C model RothC exceeded those from ¹⁴C measurements by a factor of 1.7–3.3 which suggests that C dynamics at these sites is overestimated by the model. Size of model pools and amount of C in soil fractions were only weakly correlated, thereby challenging previously postulated hypotheses concerning the correspondence of pools and fractions for grasslands at higher elevations.     

Litterfall of epiphytic macrolichens in Nothofagus forests of northern Patagonia,Argentina: Relation to stand age and precipitation

Abstract: The objective of this study was to analyse how stand age and precipitation influence abundance and diversity of epiphytic macrolichens in southern beech Nothofagus forests, estimated by lichen litter sampling. Five sites of Nothofagus dombeyi (Mirbel) Oersted were selected in Nahuel Huapi National Park, Argentina. At each site, lichen fragments from the forest floor were collected at 12.5 m² plots in pairs of young and mature N. dombeyi forest. Additionally, two sites with multi‐aged subalpine Nothofagus pumilio (Poepp. et Endl.) Krasser forest were investigated in a similar manner. Average litterfall biomass per stand varied from less than 1 kg ha^?1 in a young low‐precipitation stand to a maximum of 20 kg ha^?1 in a mature high‐precipitation stand. In places with higher precipitation, litterfall biomass in N. dombeyi forest was considerably higher in old stands as compared with young ones. In places with less than 2000 mm of precipitation, differences in biomass were less pronounced. Old humid stands contained about twice as many taxa in the litter as old low‐precipitation stands and young stands in general. Mature stands in low‐precipitation sites only contained 17% of the litter biomass as compared with mature stands in high‐precipitation sites. Epiphytic lichen composition changed from predominating fruticose lichens (Usnea spp. and Protousnea spp.) in low‐precipitation stands to Pseudocyphellaria spp., Nephroma spp. and other foliose lichens, in the high‐precipitation stands. There were no clear differences in the proportion of fruticose and foliose lichens between young and old stands. Fruticose lichens dominated litter biomass in both N. pumilio sites.     

Photosynthetic responses of soybean (Glycine max L.) to heat‐induced electrical signalling are predominantly governed by modifications of mesophyll conductance for CO2

In recent years, the effect of heat‐induced electrical signalling on plant photosynthetic activity has been demonstrated for many plant species. However, the underlying triggers of the resulting transient inhibition of photosynthesis still remain unknown. To further investigate on this phenomenon, we focused in our present study on soybean (Glycine max L.) on the direct effect of signal transmission in the leaf mesophyll on conductance for CO₂ diffusion in the mesophyll (g_m) and detected a drastic decline in g_m following the electrical signal, whereas the photosynthetic electron transport rate (ETR) was only marginally affected. In accordance with the drop in net photosynthesis (A_N), energy dispersive X‐ray analysis (EDXA) revealed a shift of K, Mg, O and P on leaf chloroplasts. Control experiments under elevated CO₂ conditions proved the transient reduction of A_N, ETR, the chloroplast CO₂ concentration (C_c) and g_m to be independent of the external CO₂ regime, whereas the effect of the electrical signal on stomatal conductance for CO₂ (g_s) turned out much less distinctive. We therefore conclude that the effect of electrical signalling on photosynthesis in soybean is triggered by its immediate effects on g_m.