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991.
992.
Kevin B. Potts Colin A. Chapman Jeremiah S. Lwanga 《The Journal of animal ecology》2009,78(6):1269-1277
1. Despite a long history of research on the influence of fruit availability on the population density of large-bodied vertebrate frugivores, operational understanding of the factors regulating density in these taxa remains elusive. We propose that fruit resources can be distinguished from one another on the basis of their functional role for the animals in question, and that such a classification system can aid in identifying the most influential determinants of frugivore density.
2. We compared the availability of several resource classes between two sites in Kibale National Park, Uganda separated by only 12 km yet differing threefold in density of chimpanzees ( Pan troglodytes ).
3. We categorized plant species used for fruit by chimpanzees according to their availability relative to habitat-wide fruit productivity, and by their tendency towards inter-individual fruiting synchrony. We predicted that the site of high chimpanzee density would support a higher density of food plant species tending to produce crops during periods of high habitat-wide productivity [high fruit abundance (HFA foods)] and of those tending to fruit synchronously among individuals during times of low habitat-wide availability (sLFA foods). The first food class should provide chimpanzees with a high nutrient density (and thus promote population growth), whereas the second should provide stable subsistence during lean periods and thus a temporally consistent resource base.
4. Counter to our prediction, only sLFA resources were more abundant at the site of high chimpanzee density than at the site of low density. We suggest that sLFA resources are most important in influencing density of large-bodied frugivores. 相似文献
2. We compared the availability of several resource classes between two sites in Kibale National Park, Uganda separated by only 12 km yet differing threefold in density of chimpanzees ( Pan troglodytes ).
3. We categorized plant species used for fruit by chimpanzees according to their availability relative to habitat-wide fruit productivity, and by their tendency towards inter-individual fruiting synchrony. We predicted that the site of high chimpanzee density would support a higher density of food plant species tending to produce crops during periods of high habitat-wide productivity [high fruit abundance (HFA foods)] and of those tending to fruit synchronously among individuals during times of low habitat-wide availability (sLFA foods). The first food class should provide chimpanzees with a high nutrient density (and thus promote population growth), whereas the second should provide stable subsistence during lean periods and thus a temporally consistent resource base.
4. Counter to our prediction, only sLFA resources were more abundant at the site of high chimpanzee density than at the site of low density. We suggest that sLFA resources are most important in influencing density of large-bodied frugivores. 相似文献
993.
994.
995.
Dev K. Singh Avia Rosenhouse-Dantsker Colin G. Nichols Decha Enkvetchakul Irena Levitan 《The Journal of biological chemistry》2009,284(44):30727-30736
Our earlier studies have shown that channel activity of Kir2 subfamily of inward rectifiers is strongly suppressed by the elevation of cellular cholesterol. The goal of this study is to determine whether cholesterol suppresses Kir channels directly. To achieve this goal, purified prokaryotic Kir (KirBac1.1) channels were incorporated into liposomes of defined lipid composition, and channel activity was assayed by 86Rb+ uptake. Our results show that 86Rb+ flux through KirBac1.1 is strongly inhibited by cholesterol. Incorporation of 5% (mass cholesterol/phospholipid) cholesterol into the liposome suppresses 86Rb+ flux by >50%, and activity is completely inhibited at 12–15%. However, epicholesterol, a stereoisomer of cholesterol with similar physical properties, has significantly less effect on KirBac-mediated 86Rb+ uptake than cholesterol. Furthermore, analysis of multiple sterols suggests that cholesterol-induced inhibition of KirBac1.1 channels is mediated by specific interactions rather than by changes in the physical properties of the lipid bilayer. In contrast to the inhibition of KirBac1.1 activity, cholesterol had no effect on the activity of reconstituted KscA channels (at up to 250 μg/mg of phospholipid). Taken together, these observations demonstrate that cholesterol suppresses Kir channels in a pure protein-lipid environment and suggest that the interaction is direct and specific.Inwardly rectifying potassium channels (Kir) are known to play critical roles in the regulation of multiple cellular functions including membrane excitability, heart rate, and vascular tone (1–3). Kir channels are classified into seven subfamilies (Kir1–7) identified by distinct biophysical properties and sensitivities to different regulators (2). Our earlier studies have shown that Kir2 channels, one of the major subfamilies of Kir that are responsible for maintaining membrane potential in a variety of cell types, are strongly suppressed by the elevation of membrane cholesterol (4, 5). Cholesterol-induced suppression of Kir2 was first observed in aortic endothelial cells (4), in which resting K+ conductance is dominated by Kir2.1 and Kir2.2 channels (6), and then when channels were heterologously expressed in Chinese hamster ovary cells (5, 7). Furthermore, the same effect was observed ex vivo in endothelial cells and bone marrow-derived progenitor cells isolated from hypercholesterolemic pigs (8, 9).In terms of the mechanism, the first insights came from comparing the effects of cholesterol and of its chiral analogue, epicholesterol. Although the two sterols are known to have almost identical effects on the biophysical properties of the lipid bilayer (10, 11), their impact on Kir activity is completely different; partial substitution of endogenous cholesterol with epicholesterol resulted in significant increase in Kir current in endothelial cells (4). These observations suggest that specific sterol-protein interactions may be involved in the cholesterol sensitivity of Kir2 channels. However, in the complex environment of the plasma membrane, cholesterol may interact not only with the channels themselves but also with other proteins, which in turn may regulate the activity of the channels. In the cellular environment, therefore, it is impossible to discriminate between direct channel-cholesterol interactions and indirect effects. Moreover, it is impossible to define the actual concentrations of cholesterol in any given membrane compartment. To quantitatively test direct cholesterol-protein interactions, it is necessary to examine sensitivity of pure Kir channels to membrane cholesterol in a membrane of defined lipid composition. To date, only the cytoplasmic domains of several mammalian Kir channels have been purified (Kir2.1, Kir3.1, and Kir3.2) (12–15). We therefore concentrate in this study on the effect of cholesterol on two bacterial K+ channels that differ in the level of their homology to mammalian Kir channels, KirBac1.1 and KcsA. KirBac channels have high sequence homology with mammalian Kirs (e.g. 52% homology between KirBac1.1 and Kir2.1; see Fig. 7A) and have now been extensively used as structural models of mammalian Kir channels (3, 16, 17). The sequence similarity between KcsA and mammalian K channels lies mainly in the transmembrane domain (18). The overall sequence homology of KcsA to mammalian Kir channels is relatively low (e.g. 22% homology between KcsA and Kir2.1; see Fig. 7A), with an entirely different cytoplasmic domain structure.Open in a separate windowFIGURE 7.Cholesterol has no effect on KcsA-mediated 86Rb+ uptake. A, time courses of 86Rb+ uptake into liposomes reconstituted with 50 μg of cholesterol/mg of PL and as compared with liposomes containing no cholesterol (control). Both batches of liposomes contained 5 μg of KcsA/mg of PL. Blank liposomes contain no protein. The points represent averages of three independent experiments (means ± S.D.). B, normalized time courses of 86Rb+ uptake in liposomes incorporating 50, 150, and 250 μg of cholesterol/mg of PL. C, maximal uptake of 86Rb+ after 240 s in liposomes containing 10, 25, 50, 100, 150, 200, and 250 μg of cholesterol/mg of PL normalized to control (means ± S.D. of 3–5 independent experiments; *, p < 0.05). DPM, disintegrations per minute.Here we show that, similarly to Kir2 channels, prokaryotic Kir channels incorporated into liposomes are strongly suppressed by an increase in membrane cholesterol. Furthermore, the sensitivity of prokaryotic Kir to cholesterol is stereo-selective to cholesterol optical analogues. In contrast, KscA channels are insensitive to membrane cholesterol. These observations suggest that cholesterol directly suppresses Kir channels. 相似文献
996.
Shizhen Wang Yewande Alimi Ailing Tong Colin G. Nichols Decha Enkvetchakul 《The Journal of biological chemistry》2009,284(5):2854-2860
Potassium channels are tetrameric proteins that mediate
K+-selective transmembrane diffusion. For KcsA, tetramer stability
depends on interactions between permeant ions and the channel pore. We have
examined the role of pore blockers on the tetramer stability of KirBac1.1. In
150 mm KCl, purified KirBac1.1 protein migrates as a monomer
(∼40 kDa) on SDS-PAGE. Addition of Ba2+
(K1/2 ∼ 50 μm) prior to loading results
in an additional tetramer band (∼160 kDa). Mutation A109C, at a residue
located near the expected Ba2+-binding site, decreased tetramer
stabilization by Ba2+ (K1/2 ∼ 300
μm), whereas I131C, located nearby, stabilized tetramers in the
absence of Ba2+. Neither mutation affected Ba2+ block of
channel activity (using 86Rb+ flux assay). In contrast
to Ba2+, Mg2+ had no effect on tetramer stability (even
though Mg2+ was a potent blocker). Many studies have shown
Cd2+ block of K+ channels as a result of cysteine
substitution of cavity-lining M2 (S6) residues, with the implicit
interpretation that coordination of a single ion by cysteine side chains along
the central axis effectively blocks the pore. We examined blocking and
tetramer-stabilizing effects of Cd2+ on KirBac1.1 with cysteine
substitutions in M2. Cd2+ block potency followed an α-helical
pattern consistent with the crystal structure. Significantly, Cd2+
strongly stabilized tetramers of I138C, located in the center of the inner
cavity. This stabilization was additive with the effect of Ba2+,
consistent with both ions simultaneously occupying the channel:
Ba2+ at the selectivity filter entrance and Cd2+
coordinated by I138C side chains in the inner cavity.Potassium channels are expressed in many cell types and are key players in
a wide range of physiological processes. One subset of potassium channels, the
inward-rectifying potassium (Kir) channels, are functionally blocked by
cytosolic cations such as Mg2+ and polyamines and contribute to the
regulation of membrane excitability, cardiac rhythm, vascular tone, insulin
release, and salt flow across epithelia
(1–3).
There are seven subfamilies of eukaryotic Kir channel genes. Among them, Kir1
encodes weak rectifiers, whereas Kir2 and Kir5 encode strong rectifiers; Kir3
encodes G-protein-regulated channels; and Kir6 encodes ATP-sensitive channels
(4). Recently, a related
bacterial family of genes (KirBac) has been identified
(5,
6), and in 2003, the first
member (KirBac1.1) was crystallized
(7), providing a structural
model for eukaryotic channels.The crystal structure of KirBac1.1 revealed a tetrameric pore structure
similar to that seen in KcsA and a novel cytoplasmic domain
(7,
8). The selectivity filter of
both KirBac1.1 and KcsA consists of an extremely conserved pore loop followed
by a central cavity, forming a transmembrane ion-selective permeation pore
(7,
8). The linear arrangement of
five oxygen rings (four from carbonyl oxygens and one from a Thr side chain)
in the selectivity filter coordinates with ions, compensating for the energy
barrier caused by K+ dehydration, thereby facilitating the rapid
diffusion of K+ across the membrane
(8–12).
Two-thirds of the KirBac1.1 amino acid residues constitute the cytosolic
domain that is highly conserved among the Kir subfamilies and form the
cytosolic vestibule
(13–16),
which, together with the transmembrane pore, generates an 88-Å-long ion
conduction pore (7).The prototypic potassium channel KcsA exists very stably as a tetramer,
even in the harsh conditions of SDS-PAGE
(17). In addition to
protein-protein interaction between monomers, protein-lipid and protein-ion
interactions play important roles in stabilizing the KcsA tetramer
(17–20).
The selectivity filter of KcsA, coordinated with K+ ions, can serve
as a bridge between the four monomers to maintain the structure of the
selectivity filter and the tetrameric architecture of the channel as a whole
(11,
21). Blocking ions, such as
Ba2+, also act as strong stabilizers
(17). In the crystal structure
of KcsA, Ba2+ occupies a site equivalent to the S4
K+-binding site within the selectivity filter
(22). Other permeant ions
(Rb+, Cs+, Tl+, and
NH+4) and strong blockers (Sr2+) can also
contribute to the thermostability of the KcsA tetramer in SDS-PAGE
(17). In contrast, impermeant
ions such as Na+ and Li+ or weak blockers such as
Mg2+ tend to destabilize the KcsA tetramer
(17,
19).Like KcsA, KirBac1.1 purified using decylmaltoside or tridecylmaltoside is
active and presumably stable as a tetramer in mild detergent solutions.
However, in SDS-PAGE, KirBac1.1 migrates exclusively as a monomer
(23). Because KcsA and
KirBac1.1 are structurally similar in the transmembrane region of the pore, we
hypothesized that permeant and blocking ions would also affect KirBac1.1
tetramer stability in SDS-PAGE. In the present work, the effects of blocking
ions such as Ba2+ and Mg2+ on KirBac1.1 tetramer
stability were examined to provide insight to the physical nature of their
interaction with KirBac1.1, particularly in the selectivity filter and TM2
cavity. The data reveal important differences in the nature of the interaction
of Mg2+ and Ba2+ with the channel as well as provide
previously unavailable evidence for the nature of Cd2+ coordination
within the channel. 相似文献
997.
998.
Peter R. Teske Colin L. McLay Jonathan Sandoval-Castillo Isabelle Papadopoulos Brent K. Newman Charles L. Griffiths Christopher D. McQuaid Nigel P. Barker Gaetan Borgonie Luciano B. Beheregaray 《Molecular phylogenetics and evolution》2009,53(1):23-33
Crabs of the family Hymenosomatidae are common in coastal and shelf regions throughout much of the southern hemisphere. One of the genera in the family, Hymenosoma, is represented in Africa and the South Pacific (Australia and New Zealand). This distribution can be explained either by vicariance (presence of the genus on the Gondwanan supercontinent and divergence following its break-up) or more recent transoceanic dispersal from one region to the other. We tested these hypotheses by reconstructing phylogenetic relationships among the seven presently-accepted species in the genus, as well as examining their placement among other hymenosomatid crabs, using sequence data from two nuclear markers (Adenine Nucleotide Transporter [ANT] exon 2 and 18S rDNA) and three mitochondrial markers (COI, 12S and 16S rDNA). The five southern African representatives of the genus were recovered as a monophyletic lineage, and another southern African species, Neorhynchoplax bovis, was identified as their sister taxon. The two species of Hymenosoma from the South Pacific neither clustered with their African congeners, nor with each other, and should therefore both be placed into different genera. Molecular dating supports a post-Gondwanan origin of the Hymenosomatidae. While long-distance dispersal cannot be ruled out to explain the presence of the family Hymenosomatidae on the former Gondwanan land-masses and beyond, the evolutionary history of the African species of Hymenosoma indicates that a third means of speciation may be important in this group: gradual along-coast dispersal from tropical towards temperate regions, with range expansions into formerly inhospitable habitat during warm climatic phases, followed by adaptation and speciation during subsequent cooler phases. 相似文献
999.
Physiological functions of beneficial elements 总被引:3,自引:0,他引:3
1000.
Xunde Xian Yu Ding Yanan Wang Colin Ross Xuming Deng George Liu 《Biochemical and biophysical research communications》2009,385(4):563-569
Enhanced susceptibility to atherosclerosis from severe hypertriglyceridemia (HTG) resulting from lipoprotein lipase (LPL) deficiency has been demonstrated in our recent findings which employed a unique mouse model. In the present study we provide further evidence that severe HTG due to LPL deficiency also promotes an atherothrombotic response to arterial injury induced by ferric chloride in a severe combined hyperlipidemic mouse model. Methods and results: A mouse model (LPL−/−XApoE−/− double knockout, DKO) with severe combined hyperlipidemia was established by crossing ApoE and LPL-deficient mice. The common carotid arteries of ApoE knockout (EKO) and DKO mice were subjected to injury by ferric chloride, and the formation of arterial thrombosis together with various markers were compared in these lesions. DKO mice demonstrated significantly enhanced thrombus formation overlying atherosclerotic plaque after injury, which contained smooth muscle cells, macrophages, and neutral lipid. The area of neointima, mean intima/media ratios, and the percentage of luminal stenosis were significantly greater (P < 0.01) in DKO mice. Compared with EKO mice, the expression of von Willebrand factor (vWF) and plasminogen activator inhibitor type 1 (PAI-1) were increased in DKO mice. Conclusions: Severe combined hyperlipidemia promotes thrombosis after ferric chloride injury to atherosclerotic vessels and HTG plays a major role in the process. 相似文献