Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer

Both 5-methylcytosine (5mC) and its oxidized form 5-hydroxymethylcytosine (5hmC) have been proposed to be involved in tumorigenesis. Because the readout of the broadly used 5mC mapping method, bisulfite sequencing (BS-seq), is the sum of 5mC and 5hmC levels, the 5mC/5hmC patterns and relationship of these two modifications remain poorly understood. By profiling real 5mC (BS-seq corrected by Tet-assisted BS-seq, TAB-seq) and 5hmC (TAB-seq) levels simultaneously at single-nucleotide resolution, we here demonstrate that there is no global loss of 5mC in kidney tumors compared with matched normal tissues. Conversely, 5hmC was globally lost in virtually all kidney tumor tissues. The 5hmC level in tumor tissues is an independent prognostic marker for kidney cancer, with lower levels of 5hmC associated with shorter overall survival. Furthermore, we demonstrated that loss of 5hmC is linked to hypermethylation in tumors compared with matched normal tissues, particularly in gene body regions. Strikingly, gene body hypermethylation was significantly associated with silencing of the tumor-related genes. Downregulation of IDH1 was identified as a mechanism underlying 5hmC loss in kidney cancer. Restoring 5hmC levels attenuated the invasion capacity of tumor cells and suppressed tumor growth in a xenograft model. Collectively, our results demonstrate that loss of 5hmC is both a prognostic marker and an oncogenic event in kidney cancer by remodeling the DNA methylation pattern.     

A Simple,Rapid and Sensitive FRET Assay for Botulinum Neurotoxin Serotype B Detection

Botulinum neurotoxins (BoNTs), the most potent naturally-occurring neurotoxins known to humans, comprise seven distinct serotypes (BoNT/A-G), each of which exhibits unique substrate specificity. Many methods have been developed for BoNT detection, in particular for BoNT/A, with various complexity and sensitivity, while substrate based FRET assay is considered as the most widely used approach due to its simplicity and sensitivity. In this study, we designed a vesicle-associated membrane protein 2 (VAMP2) based FRET assay based on the understanding of the VAMP2 and light chain/B (LC/B) interactions in our previous studies. The current design constituted the shortest peptide, VAMP2 (63–85), with FRET dyes (EDAN and Dabcyl) labelled at position 76 and 85, respectively, which showed minimal effect on VAMP2 substrate catalysis by LC/B and therefore enhanced the sensitivity of the assay. The FRET peptide, designated as FVP-B, was specific to LC/B, with a detection sensitivity as low as ∼20 pM in 2 h. Importantly, FVP-B showed the potential to be scaled up and used in high throughput screening of LC/B inhibitor. The currently developed FRET assay is one of the most economic and rapid FRET assays for LC/B detection.     

槲皮素对凝血酶诱导的猪血小板肌动蛋白聚合的抑制作用

槲皮素对凝血酶诱导的猪血小板肌动蛋白聚合的抑制作用宋芝娟刘文梁念慈（广东医学院医用生化研究所,湛江５２４０２３）槲皮素（ｑｕｅｒｃｅｔｉｎ）有广泛的药理作用,如舒张血管〔１〕,抑制癌细胞ＤＮＡ合成〔２〕,诱发ＤＮＡ损伤〔３〕,抗超氧阴离子等〔４〕,...     

MESS评分在肢体严重软组织损伤治疗中的应用评估

目的:探讨MESS评分在治疗肢体严重软组织损伤中的应用价值。方法:回顾性分析我科2010年8月至2014年5月收治的50例肢体严重软组织损伤患者的临床资料,其中男34例,女16例,年龄23~53岁,平均38岁。所有患者入院时均采用MESS评分表进行评分,根据病情给予清创、保肢或截肢以及创面修复等系列治疗,并随访3个月~3年。按照治疗结果将患者分为保肢组、Ⅰ期截肢组和Ⅱ期截肢组,分析和比较三组的MESS分值、住院天数、手术次数、并发症的发生率及患者满意率。结果:保肢组32例,MESS评分6-11分,平均8.63±1.26分。截肢组18例,MESS评分11-14分,其中Ⅰ期截肢组10例,平均12.60±0.97分;Ⅱ期截肢组8例,平均12.88±0.83分。保肢组患者的MESS分值显著低于Ⅰ期截肢组(P0.05)和Ⅱ期截肢组(P0.05)。此外,保肢组患者满意率显著高于Ⅰ期截肢组(P0.05)和Ⅱ期截肢组(P0.05)。而Ⅰ期截肢组的住院时间、手术次数和并发症发生率均短于或少于Ⅱ期截肢组,患者满意率高于Ⅱ期截肢组(P0.05)。结论:对于MESS评分11分的患者行保肢治疗可收到满意的效果,而对MESS评分11分的患者,采取Ⅰ期截肢的治疗效果优于Ⅱ期截肢。     

赣江流域底泥中有机氯农药残留特征及空间分布

基于"临水垂直插管法"采集赣江流域32个采样点的底泥样品,经索氏提取方法(Soxhlet Extraction,SE)前处理及气相色谱法(GC-ECD)检测样品中有机氯农药(OCPs)含量。结合多元统计学和ArcGIS9.3,研究了8种有机氯农药的残留状况及空间分布情况。结果表明,所检测8种OCPs中,除β-HCH有2个点未检出,其它7种OCPs检出率为100%。以DDTs残留含量最高,DDTs平均值为10.40μg/kg,其异构体以p,p’-DDT为主;HCHs的平均值为8.24μg/kg,其异构体以β-HCH为主。它们除了来自环境中的早期残留外,仍然具有新的外源HCHs和DDTs的输入。不同OCPs在研究区分布存在很大差异,HCHs总量分布较高的地区位于流域的中下游,DDTs总量分布较高的地区位于流域的中上游。     

31p磁共振波谱物质检测准确性的验证研究

目的:评价1.5T磁场下31PMRS磷化合物检测的准确性.方法:以卵磷脂为参照标准品,对照研究对同一位正常志愿者骨骼肌肉磷谱代谢特征,对其股骨下端先后行两次相同参数、相同条件状态下的31P波谱检测,第二次检测时在感共趣区内体外加入卵磷脂标准品,对比两次检测的结果变化.结果:对同一位正常志愿者先后两次进行渡谱检测,加入卵磷脂后各代谢物波谱变化为β-ATP:-24.46,α-ATP:+82.61,γ-ATP:-32.89,PCr:+64.32,Pi.+110.5,PDE:+462.57,PME:+15.71.加入卵磷脂后,PDE峰改变最明显.结论:1.5T磁场下31P MRS能准确检测体内化合物的存在及其定量分析,研究结果可信.     

Development and evaluation of a novel nano‐scale vector for siRNA

To synthesize a lipid‐cationic polymer (LCP) containing brassidic acid side chain and to investigate its transfection efficiency and characteristics as a siRNA gene vector. The LCP was chemically synthesized and its nucleic acid binding capacity was determined by gel electrophoresis. HeLa‐EGFP and TH1080‐EGFP cell lines were transfected with siRNA against enhanced green fluorescent protein (EGFP) gene using a LCP to investigate the transfection efficiency. An MTT assay was performed to evaluate the cellular toxicity of the LCP vector. Its degradability and stability under acidic conditions were also investigated. The LCP vector possessed high DNA binding capacity. More than 73% of the cellular fluorescence was inhibited by the LCP‐mediated transfection of siRNA against EGFP gene, indicating that vector had high transfection efficiency. Cellular viability was about 95% at the optimum transfection efficiency of LCP, suggesting that the cellular toxicity of LCP was very low. The LCP was also observed to be degradable; moreover, it could be easily stored at normal temperature. A gene vector used for the transfection of siRNA was successfully fabricated from synthesized LCP. Its numerous excellent properties entitle values for further scientific research. J. Cell. Biochem. 111: 881–888, 2010. © 2010 Wiley‐Liss, Inc.     

西藏飞蝗九个地理种群群居型形态特征的数量分析

为探讨群居型西藏飞蝗Locusta migratoria tibetensis Chen地理种群数量性状关系,从青藏高原9个地区采集到不同地理种群,以数值分析对形态指标及其比值进行了分析。结果表明,前翅长度(E)、后足股节长度(F)、头宽(C)形态指标和E/F、F/C两个比值可以作为分析种群关系的参数。聚类分析和主成分分析结果相似,能够较好地说明青藏高原9个种群的地理变异和种群相互关系,9个地理种群可以分三个类群,即第Ⅰ类群包括百巴(BB)与八美(BM)种群;第Ⅱ类群包括普兰(PL)、扎囊(ZN)、洛须(LX)种群;第Ⅲ类群包括噶尔(GE)、香孜(XZ)、日土(RT)、那嘎(NG)种群。     

Morphological variations of Caragana microphylla populations in the Xilingol steppe and their relationship with environmental factors

The morphological variations of branches, leaves, flowers, fruits and seeds of Caragana microphylla and their correlations with environmental factors were analyzed based on five natural populations in the Xilingol steppe, Inner Mongolia, China. Nested variation analysis showed that there were significant differences in all of the 28 morphological characters within and among populations in 16 morphological characters, and the variations within populations were much greater than those among populations in most morphological characters. Cluster analysis showed that the five populations of C. microphylla could be divided into two groups in morphological characters, and there was significant positive correlation between the divergence of morphological characters matrix and geographical distance matrix. Principal component analysis showed that leaflet length, area of a compound leaf, fresh-mass of a compound leaf, and shoot fresh-mass were main morphological characters that varied among C. microphylla populations. Spearman correlation analysis showed that there were significant correlations between some morphological characters and soil factors. Soil N:P ratio, available N content, total N content, organic matter content and soil water content were main factors that were associated with morphological characters of C. microphylla.     

mRNA的序列、结构以及翻译速率与蛋白质结构的关系

mRNA所包含的核苷酸序列通过三联体密码子决定了蛋白质的氨基酸序列。但是, 由于对氨基酸同义密码使用频率上的差异, 密码子与反密码子相互作用效率上的不同, 以及密码子上下文关系和mRNA 不同区域二级结构上的差异, 造成了核糖体对mRNA 不同区域翻译速度上的差异, 加之共翻译折叠的作用, 使得mRNA 的序列和结构影响着蛋白质空间结构的形成。