小型猪与梅山猪Prop1基因的比较分析

Prop1是一种新发现的参与早期胚胎垂体发育的特异性转录因子。在人和动物均已发现由于该基因突变而引起的综合性垂体功能障碍,进而影响生长和繁殖。小型猪与梅山猪比较,其繁殖力和生长性能差异显著,为了了解这些差异的遗传基础,本试验对五指山猪、藏猪和版纳猪三种小型猪的Prop1基因进行克隆测序,并与已知梅山猪的序列进行对比,结果为:五指山猪与藏猪外显子1第69位发生G-A碱基替换,编码同义氨基酸;藏猪外显子2第115位发生A-G碱基替换,编码终止密码子;藏猪与版纳猪外显子3第466位和第631位均发生C-T碱基替换,第466位藏猪编码同义氨基酸;第631位版纳猪编码丝氨酸(TCC),梅山猪编码脯氨酸(CCC),即两种猪的Prop1基因产物不同。在Prop1基因终止密码下游250左右有一个腺苷酸丰富区,五指山猪与藏猪有15个腺苷酸串联,版纳猪有12个。上述结果为进一步研究大猪和小型猪之间生产性能差异的遗传基础提供了新线索。     

Stem cell research in China

In the past 5 years, China has increased its efforts in the field of stem cell research and practice. Basic research mainly focuses on bone marrow and embryonic stem cells. Clinical applications of stem cells in the treatment of acute heart failure, acute liver failure and lower limb ischaemia have been reported by many hospitals. China enacted its 'Ethical Guidelines for Human Embryonic Stem Cell Research' in 2003. At present, China has the most liberal and favourable environments for human embryonic stem cell research.     

RNA-Seq Reveals the Effect of Ethylene on the Volatile Organic Components (VOCs) of Cavendish Banana at Different Post-harvesting Stages

Aroma serves as one of the decisive factors influencing the value of banana commodities. Most of characteristic volatile organic components (VOCs) are formed during post-harvesting. However, the changing of VOCs of banana at different post-harvesting stages remain ambiguous. In this study, the VOCs of Cavendish banana for the four typical post-harvesting stages (green stage/half of yellow stage/yellow ripening stage/over ripening stage) are clarified using headspace solid phase micro-extraction (HS-SPME), combined with gas chromatography-mass spectrometry (GC–MS). The results inferred that the relative content of branched-chain esters such as acetate and butyrate, which form the main contributors of aroma in bananas, is higher in the T2 and T3 stages. Further, RNA-Seq technology was employed to clarify the formation mechanism of banana aroma in the post-harvesting stage. The MaTGL4 gene of the linoleic acid metabolism pathway and the MaBCAT3 and MaBCAT5 genes of the valine, leucine and isoleucine degradation pathway in banana suggest the expression is active late in the ripening stage, and the upregulated expression of these genes is analogous to the formation of aroma components such as branched-chain esters and hexenal. The above results not only provide baseline data on the differences in physical and chemical properties of VOCs in various post-harvesting stages of banana production, but also provide theoretical guidance facilitating the subsequent improvement of the commercial value of bananas through genetic improvement.

     

三峡库区人类活动强度与景观格局的耦合响应

人类活动和景观格局是人地系统中两大要素的重要表征,探析人类活动强度与景观格局的耦合变化特征对揭示区域人地关系的演变意义重大。为弥补当前对人类活动强度与景观格局耦合响应研究的不足,构建了山区人类活动强度与景观格局耦合演变模型,提出了综合显性—隐性人类活动强度指数,定量评价了三峡库区腹地奉节县2000—2020年的人类活动强度,并通过双变量空间自相关模型探讨了综合人类活动强度与景观格局的空间耦合特征。研究表明：(1)奉节县的综合人类活动强度在时间上由2000年的11.59%增加为2020年的12.48%,在空间上表现为整体收缩,局部增强的特点,另外人类活动强度和景观格局的空间分布与奉节县的地形梯度密切相关;(2)奉节县的人类活动强度与景观格局空间耦合变化表现出协调型、拮抗型、逐渐协调型和逐渐拮抗型四种类型;(3)影响奉节县综合人类活动强度与景观格局的耦合变化的重要因子为距聚落距离、距县行政中心距离、高程等,社会经济因素逐渐成为区域社会生态系统演变主导因素;(4)三峡库区腹地人类活动强度与景观格局存在耦合响应,且其耦合响应具有一定的多样性和特殊性。三峡库区腹地通过沟谷土地集约化来换取山区的生...     

火烧对黔中喀斯特山地马尾松林土壤理化性质的影响

在黔中喀斯特山地马尾松人工次生林内取样分析火烧和对照样地间土壤理化指标的变化,研究了火烧对林地土壤理化性质的影响。结果表明马尾松火烧林地表层土壤毛管孔隙度和总孔隙度升高、最大持水量和最小持水量增加,土壤密度和非毛管孔隙度降低、土壤质量含水量和体积含水量减少;土壤有机质、全N量、全P量、全K量,水解N量、有效P量、速效K量、交换性盐基量和pH值增大,阳离子交换量降低。林火对马尾松林地土壤主要理化指标影响的趋势为或表层土壤影响率大于剖面影响率、或表层土壤影响率小于剖面影响率,不同指标在土壤剖面的变化趋势或增加、或降低,对数或幂函数拟合曲线均达相关显著性水平。火烧和对照样地间的表层土壤理化指标变化主要反映了林火影响,近岩层土壤理化指标变化主要是成土母质在空间上的分异,也受生物的影响。乔木层植株死亡率同表层土壤最大持水量、最小持水量、有机质量和全N量的正相关性显著,同土壤密度的负相关性显著;灌木层植株死亡率同表层土壤密度正相关性显著,同毛管孔隙度、总孔隙度、质量含水量、最大持水量、最小持水量、有机质量、全N量、全P量和速效K量的负相关性达显著或极显著水平;灌木层生物损失量同表层土壤密度和有机质量正相关显著,同速效K量的负相关性显著,枯物层生物损失量同pH值的正相关性显著。火烧马尾松林分平均胸径同表层土壤密度正相关性显著,同毛管孔隙度、总孔隙度、质量含水量、最大持水量、最小持水量和有机质量的负相关性显著。     

桂西北典型喀斯特区生态服务价值的环境响应及其空间尺度特征

Study on ecosystem service values (ESVs) is the bridge of understanding ecosystem and economic decision-making. To investigate the response of ESVs to ambient environment and their spatial scales is an urgent work in the process of ecological restoration and sustainable development in southwest China. Based on the previous research results, the remote images, and weather data of 31 years (1975-2005), the response of ESVs to ambient environment and their spatial scales in a typical karst area of northwest Guangxi, China were evaluated with the method of empirical mode decomposition (EMD) in this paper. The results showed that ESVs had obvious variations with changes in elevation, rocky types and soil types, and had corresponding characteristics of spatial scales. The ESVs in middle and low elevation areas were higher, but they decreased due to human activities such as deforestation. The ESVs in peak-cluster depression areas were lower, and they would increase as influenced by policies such as returning farmland to forestland. The ESVs were influenced by rocky types, showing lower values but an increasing trend in the typical karst regions while higher values but a decreasing trend in non-karst regions. The average ESVs in the west part of the study region, which is not only the main nature reserve for rare wildlife species in Guangxi, but also one of the best preserved natural vegetation regions in China, were more than 15,000 RMB Yuan ha-1,. Comparatively, the ESVs were less than 10,000 Yuan ha-1 in the middle part of the region attributed to low vegetation coverage, serious peak-cluster depression and karst rocky desertification. After about 20 years, that is from 1985 to 2005, the ecosystem conditions had been improved and the ESVs had increased in the middle and eastern part of this study region. On the contrary, in most western part, which was dominated by subtropical evergreen broad-leaved forest, they had been worsened, and the balance values of ESVs were negative. As for the relationships of ESVs with rocky types and soil types, lime soil and red soil were the two main soil types that contributed to ESVs (The total contribution was above 60%, and it is 63.77%,64.37%,64.56%,64.91% respectively in the four years of 1985, 1990, 2000 and 2005.). The variance contribution of intrinsic mode function (IMF) and trend (R) showed that there were obvious special sales for ESVs in this study area, and the main spatial scales were about 2.7 km, 5.5 km, and 11.6 km. The variance contribution ratio was 12.29%, 11.26%, 11.49% respectively, and the trend (R) was high (17.74%). In conclusion, this study indicated that ecosystem conditions in the typical karst area were improved owing to the application of rocky desertification control policies, such as ecological migration and returning farmland to forestland. Besides, the main spatial scales of ESVs in the study area were the interactions of terrain, physiognomy, land use / land cover and human activities.     

柿ξ-胡萝卜素脱氢酶基因的克隆与序列分析

通过对柿ζ-胡萝卜素脱氢酶(-ζCarotene desaturase,ZDS)基因的克隆及序列分析,旨在为改良柿果实品质奠定基础。根据GenBank中其他植物ZDS基因的保守序列设计了两条PCR扩增引物,以柿果实中所提取的RNA为模板,采用RACE技术扩增出一条约为500bp的条带。经过序列分析,其长578bp,不含内含子,具有部分开放阅读框(177bp)、终止密码子(TGA)和poly(A)尾巴(11bp),共编码58个氨基酸。该序列及其所编码的氨基酸与其他植物ζ-胡萝卜素脱氢酶基因均具有较高的同源性。该基因已提交GenBank数据库,登录号为GU075728。     

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format

SUMMARY: Bambino is a variant detector and graphical alignment viewer for next-generation sequencing data in the SAM/BAM format, which is capable of pooling data from multiple source files. The variant detector takes advantage of SAM-specific annotations, and produces detailed output suitable for genotyping and identification of somatic mutations. The assembly viewer can display reads in the context of either a user-provided or automatically generated reference sequence, retrieve genome annotation features from a UCSC genome annotation database, display histograms of non-reference allele frequencies, and predict protein-coding changes caused by SNPs. AVAILABILITY: Bambino is written in platform-independent Java and available from https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html, along with documentation and example data. Bambino may be launched online via Java Web Start or downloaded and run locally.