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61.
62.
Tobamoviruses, mostly isolated from solanaceous plants, may represent
ancient virus lineages that have codiverged with their hosts. Recently
completed nucleotide sequences of six nonsolanaceous tobamoviruses allowed
assessment of the codivergence hypothesis and support a third subgroup
within tobamoviruses. The genomic sequences of 12 tobamoviruses and the
partial sequences of 11 others have been analyzed. Comparisons of the
predicted protein sequences revealed three clusters of tobamoviruses,
corresponding to those infecting solanaceous species (subgroup 1), those
infecting cucurbits and legumes (subgroup 2), and those infecting
crucifers. The orchid-infecting odontoglossum ringspot tobamovirus was
associated with subgroup 1 genomes by its coat and movement protein
sequences, but with the crucifer-pathogenic tobamoviruses by the remainder
of its genome, suggesting that it is the progeny of a recombinant. For four
of five genomic regions, subgroup 1 and 3 genomes were equidistant from a
subgroup 2 genome chosen for comparison, suggesting uniform rates of
evolution. A phylogenetic tree of plant families based on the tobamoviruses
they harbor was congruent with that based on rubisco sequences but had a
different root, suggesting that codivergence was tempered by rare events of
viruses of one family colonizing another family. The proposed subgroup 3
viruses probably have an origin of virion assembly in the movement protein
gene, a large (25-codon) overlap of movement and coat protein open reading
frames, and a comparably shorter genome. Codon-position- dependent base
compositions and codon prevalences suggested that the coat protein frame of
the overlap region was ancestral. Bootstrapped parsimony analysis of the
nucleotides in the overlap region and of the sequences translated from the
-1 frame (the subgroup 3 movement protein frame) of this region produced
trees inconsistent with those deduced from other regions. The results are
consistent with a model in which a no or short overlap organization was
ancestral. Despite encoding of subgroup 2 and 3 movement protein C-termini
by nonhomologous nucleotides, weak similarities between their amino acid
sequences suggested convergent sequence evolution.
相似文献
63.
Guo B Blair D Chiles TC Lowell CA Rothstein TL 《Journal of immunology (Baltimore, Md. : 1950)》2007,178(8):4726-4730
B cell exposure to IL-4 alters subsequent BCR signaling such that ERK phosphorylation becomes signalosome-independent; however, the nature of this new, alternate signaling pathway and its relationship to the classical, signalosome-dependent signaling pathway are not known. In this study, we report that the alternate and classical pathways for BCR signaling are differentially affected by rottlerin, and by Go6976 or LY294002, respectively. Furthermore, in B cells lacking protein kinase C (PKC)beta, the classical pathway for BCR signaling is blocked, whereas the alternate pathway is little affected. Conversely, in B cells lacking Lyn, the alternate pathway for BCR signaling is blocked, whereas the classical pathway is little affected. The rottlerin-sensitive element is not PKCdelta, inasmuch as the alternate pathway is not blocked in PKCdelta-deficient B cells. These results indicate that the rottlerin-sensitive, Lyn-dependent alternate pathway, and the classical pathway, for BCR signaling operate in parallel when BCR engagement follows IL-4 exposure. 相似文献
64.
65.
Methylmethacrylate (MMA) is the most commonly used embedding medium for sectioning undecalcified bone; however, a number of problems exist with its use in a research laboratory. MMA requires a long infiltration time and temperature control, and it reacts with many polymers. We used Kleer Set resin™ as an alternative embedding medium for sectioning undecalcified bone specimens. Fluorochrome labeled bone specimens were sectioned transversely using a ground section technique and longitudinally on a sledge macrotome. The slides were viewed using both transmitted light and epifluorescence microscopy. High quality sections were obtained using Kleer Set resin™ for both sectioning techniques. We have shown that this new embedding medium is simpler, safer, quicker to use and does not interfere with visualization of fluorochromes. 相似文献
66.