Rainforest conversion to smallholder cash crops leads to varying declines of beetles (Coleoptera) on Sumatra

Southeast Asian arthropod biodiversity is in rapid decline, but the variability of responses within taxa has received little attention. Using canopy fogging, we collected ~50,000 beetles (Coleoptera) in (1) lowland rainforest, (2) jungle rubber (rubber agroforest), and smallholder monoculture plantations of (3) rubber and (4) oil palm in Sumatra, across two landscapes and seasons. On average, beetle abundance was more than 50%, and biomass over 75%, lower in rubber and oil palm plantations than in rainforest and jungle rubber. This pattern was influenced by landscape and season. Abundance and biomass declines were similar in Chrysomelidae, Elateridae, and Staphylinidae, but differed in Curculionidae, which were most abundant in oil palm due to the introduced oil palm pollinator Elaeidobius kamerunicus. Across beetle families, species richness in monocultures was reduced by at least 70% compared to rainforest, with beetle richness in jungle rubber being similar to rainforest. Community composition in oil palm plantations differed markedly from the other land-use systems for Chrysomelidae and Curculionidae, but less for Elateridae and Staphylinidae. Turnover contributed more to overall beta diversity than nestedness for all families and land-use systems. Likely undersampling of the beetle community in rainforest suggests that declines of beetle density and diversity are much more severe than reported here, especially for beetle families with many concealed species, such as Staphylinidae. This study provides first evidence that negative responses of beetles to tropical land-use change vary among families, and is the first report of its kind from heavily understudied Sumatra.     

Turbidimetric analysis of growth kinetics of bacteria in the laboratory environment using smartphone

For different microbiological and pathological studies, it is often required to monitor the growth of bacteria in a cultured medium in the laboratory environment. UV‐VIS spectrophotometer is commonly used to estimate the growth of bacterial cell population by measuring the absorbance at 600 nm over a period of time. Colony‐forming unit (CFU) is another approach, which has been routinely performed to estimate the live bacterial cells on semisolid agar plates. Herein, we demonstrate an alternative yet highly reliable sensing platform on a smartphone using which growth kinetics of different bacteria can be reliably monitored. The performance of the proposed smartphone sensor has been compared with the data obtained from OD600 and CFU analysis. A good correlation of bacterial growth rates enumerated based on the proposed smartphone sensor, bench‐top spectrophotometer and CFU analysis have been observed under the experimental conditions.     

Three new records of powdery mildews found in Mexico with one genus and one new species proposed

Cystotheca lanestris on the new host Quercus canbyi, Microidium bauhiniicola on the new host Bauhinia macranthera and an undescribed species of Phyllactinia on Mimosa aculeaticarpa have recently been collected in Mexico. Analyses of morphological traits and molecular sequence data led to identifications of the causal agents of the powdery mildew diseases involved. Microidium bauhiniicola, hitherto only known from Argentina and Brazil, is new to Mexico. The phylogenetic analysis revealed an isolated position distant from Microidium indicating an undescribed genus, which is introduced as Bulbomicroidium gen. nov. Sequences derived from a Mexican specimen of C. lanestris on Quercus canbyi agree completely with other North American sequences, but differ from sequences retrieved from Asian collections, suggesting that C. lanestris in Asia is not conspecific with C. lanestris s. str. in North America. A new species of Phyllactinia on Mimosa malacophylla is morphologically similar to P. dalbergiae but readily distinguishable by differences in the asexual morph. Based on morphological peculiarities and results of molecular sequence analyses, this species is described as Phyllactinia mimosae sp. nov.     

Kinetic Folding Mechanism of Erythropoietin

This report describes what to our knowledge is the first kinetic folding studies of erythropoietin, a glycosylated four-helical bundle cytokine responsible for the regulation of red blood cell production. Kinetic responses for folding and unfolding reactions initiated by manual mixing were monitored by far-ultraviolet circular dichroism and fluorescence spectroscopy, and folding reactions initiated by stopped-flow mixing were monitored by fluorescence. The urea concentration dependence of the observed kinetics were best described by a three-state model with a transiently populated intermediate species that is on-pathway and obligatory. This folding scheme was further supported by the excellent agreement between the free energy of unfolding and m-value calculated from the microscopic rate constants derived from this model and these parameters determined from separate equilibrium unfolding experiments. Compared to the kinetics of other members of the four-helical bundle cytokine family, erythropoietin folding and unfolding reactions were slower and less susceptible to aggregation. We tentatively attribute these slower rates and protection from association events to the large amount of carbohydrate attached to erythropoietin at four sites.