Ectomycorrhizal transfer of amino acid-nitrogen to the alpine sedge Kobresia myosuroides

Previous work in the Colorado alpine ecosystem has shown that amino acids are a potentially important N source for the sedge, Kobresia myosuroides . This plant is the only known sedge to harbour associations with ectomycorrhizal fungi. The aim of the present work was to test the hypothesis that these ectomycorrhizas transfer N from amino acids in the soil solution to the host plant, and thereby have an important role in the N nutrition of this species. We used a two-chamber system (rhizoboxes) in which K. myosuroides plants were separated from a soil chamber by nylon mesh that allowed fungal hyphae, but not plant roots, to cross it. Injections of [¹⁵N, 2-¹³C]glycine were made into the soil chamber. The hyphal crossings on half of the rhizoboxes were regularly disrupted to control for leakage of label across the barrier. Plants in the intact rhizoboxes showed significantly higher ¹⁵N enrichment than those in controls, and mycorrhizal root tips were significantly more enriched than bulk roots. The mycorrhizas transferred an average of 1.3% of the added ¹⁵N label to plants, a figure comparable to those obtained in previous studies in which plant roots were directly exposed to label. We conclude that fungal associations have an important role in the N nutrition of K. myosuroides by transferring N from amino acids to their hosts.     

Methane bubbles in surface peat cores: in situ measurements

The quantification of greenhouse gas sources and sinks is important to understanding the impact of climate change. Methane (CH₄) is a potent greenhouse gas, which, on a global scale, is released largely as a product of anaerobic microbial decomposition and predominantly from wetlands. A zone of intense CH₄ production just below the water table is thought to contribute significantly to the overall flux from peat bogs. We describe the use of membrane inlet quadrupole mass spectrometry (QMS) to confirm the existence of bubbles, their gaseous concentrations and their localization at a fine spatial resolution within intact peat cores. We use the distribution of the noble gas argon (Ar) and the distinct QMS responses to dissolved and gaseous (bubble) phases to identify trapped bubbles with a resolution of 0.6 mm. Bubbles with CH₄ concentrations of up to 20 kPa were widely distributed in the upper 300 mm of the cores with ～11% of all profiles comprising bubbles. The dissolved concentrations responsible for the bubbles were on average 83±80 μm , indicating lower concentrations relative to other QMS studies. We suggest that if the distinction between dissolved and gaseous phases is not made in studies of CH₄ within peat profiles then the prominence of bubbles is likely to result in overestimates of dissolved CH₄ concentrations. Fluxes of CH₄ from peat as a result of drawdown or other perturbation are likely to be large, rapid and short lived because of bubble burst, and also larger than from peat without bubbles. We suggest that the dynamics of fluxes need to be modelled taking into account both gaseous and dissolved phases. Estimates of potential fluxes that assume CH₄ is dissolved are likely to overestimate fluxes if the gaseous phase has not been taken into account.     

Do introduced North American beavers Castor canadensis engineer differently in southern South America? An overview with implications for restoration

• 1 Twenty‐five pairs of North American beavers Castor canadensis Kuhl were introduced to Tierra del Fuego Island in 1946. The population has expanded across the archipelago, arriving at the Chilean mainland by the mid‐1990s. Densities range principally between 0.5–2.05 colonies/km. They have an impact on between 30–50% of stream length and occupy 2–15% of landscape area with impoundments and meadows. Beaver impacts constitute the largest landscape‐level alteration in subantarctic forests since the last ice age.
• 2 The colonization pattern, colony densities and impacted area indicate that habitat in the austral archipelago is optimal for beaver invasion, due to low predator pressure and suitable food resources. Nothofagus pumilio forests are particularly appropriate habitat, but a more recent invasion is occurring in adjacent steppe ecosystems. Nonetheless, Nothofagus reproductive strategies are not well adapted to sustain high beaver population levels.
• 3 Our assessment shows that at the patch‐scale in stream and riparian ecosystems, the direction and magnitude of exotic beaver impacts are predictable from expectations derived from North American studies, relating ecosystem engineering with underlying ecological mechanisms such as the relationships of habitat heterogeneity and productivity on species richness and ecosystem function.
• 4 Based on data from the species' native and exotic range, our ability to predict the effects of beavers is based on: (i) understanding the ecological relationships of its engineering effects on habitat, trophic dynamics and disturbance regimes, and (ii) having an adequate comprehension of the landscape context and natural history of the ecosystem being engineered.
• 5 We conclude that beaver eradication strategies and subsequent ecosystem restoration efforts, currently being considered in southern Chile and Argentina, should focus on the ecology of native ecosystems rather than the biology of this invasive species per se. Furthermore, given the nature of the subantarctic landscape, streams will probably respond to restoration efforts more quickly than riparian ecosystems.

     

High-frequency field measurements of diurnal carbon isotope discrimination and internal conductance in a semi-arid species, Juniperus monosperma

We present field observations of carbon isotope discrimination (Δ) and internal conductance of CO₂ ( g _i) collected using tunable diode laser spectroscopy (TDL). Δ ranged from 12.0 to 27.4‰ over diurnal periods with daily means from 16.3 ± 0.2‰ during drought to 19.0 ± 0.5‰ during monsoon conditions. We observed a large range in g _i, with most estimates between 0.04 and 4.0  µ mol m⁻² s⁻¹ Pa⁻¹. We tested the comprehensive Farquhar, O'Leary and Berry model of Δ (Δ_comp), a simplified form of Δ_comp (Δ_simple) and a recently suggested amendment (Δ_revised). Sensitivity analyses demonstrated that varying g _i had a substantial effect on Δ_comp, resulting in mean differences between observed Δ (Δ_obs) and Δ_comp ranging from 0.04 to 9.6‰. First-order regressions adequately described the relationship between Δ and the ratio of substomatal to atmospheric CO₂ partial pressure ( p _i/ p _a) on all 3 d, but second-order models better described the relationship in July and August. The three tested models each best predicted Δ_obs on different days. In June, Δ_simple outperformed Δ_comp and Δ_revised, but incorporating g _i and all non-photosynthetic fractionations improved model predictions in July and August.     

Soil organic matter dynamics during 80 years of reforestation of tropical pastures

Our research takes advantage of a historical trend in natural reforestation of abandoned tropical pastures to examine changes in soil carbon (C) during 80 years of secondary forest regrowth. We combined a chronosequence approach with differences in the natural abundance of ¹³C between C3 (forest) and C4 (pasture) plants to estimate turnover times of C in the bulk soil and in density fractions. Overall, gains in secondary forest C were compensated for by the loss of residual pasture-derived soil C, resulting in no net change in bulk soil C stocks down to 1 m depth over the chronosequence. The free light fraction (LF), representing physically unprotected particulate organic matter, was most sensitive to land-use change. Reforestation replenished C in the free LF that had been depleted during conversion to pastures. Turnover times varied with model choice, but in general, soil C cycling rates were rapid for the 0–10 cm depth, with even the heavy fraction (HF) containing C cycling in decadal time scales. Turnover times of C in the free LF from the 0–10 cm depth were shorter than for the occluded and HFs, highlighting the importance of physical location in the soil matrix for residence time in the soil. The majority of the soil C pool (82±21%) was recovered in the mineral-associated density fraction. Carbon-to-nitrogen ratios and differences in natural abundance ¹⁵N of soil organic matter (SOM) showed an increasing degree of decomposition across density fractions with increasing mineral association. Our data show that the physical distribution of C in the soil has a large impact on soil C turnover and the ability of soils to maintain SOM stocks during land-use and land-cover change.     

Sources of plant-derived carbon and stability of organic matter in soil: implications for global change

Alterations in forest productivity and changes in the relative proportion of above‐ and belowground biomass may have nonlinear effects on soil organic matter (SOM) storage. To study the influence of plant litter inputs on SOM accumulation, the Detritus Input Removal and Transfer (DIRT) Experiment continuously alters above‐ and belowground plant inputs to soil by a combination of trenching, screening, and litter addition. Here, we used biogeochemical indicators [i.e., cupric oxide extractable lignin‐derived phenols and suberin/cutin‐derived substituted fatty acids (SFA)] to identify the dominant sources of plant biopolymers in SOM and various measures [i.e., soil density fractionation, laboratory incubation, and radiocarbon‐based mean residence time (MRT)] to assess the stability of SOM in two contrasting forests within the DIRT Experiment: an aggrading deciduous forest and an old‐growth coniferous forest. In the deciduous forest, removal of both above‐ and belowground inputs increased the total amount of SFA over threefold compared with the control, and shifted the SFA signature towards a root‐dominated source. Concurrently, light fraction MRT increased by 101 years and C mineralization during incubation decreased compared with the control. Together, these data suggest that root‐derived aliphatic compounds are a source of SOM with greater relative stability than leaf inputs at this site. In the coniferous forest, roots were an important source of soil lignin‐derived phenols but needle‐derived, rather than root‐derived, aliphatic compounds were preferentially preserved in soil. Fresh wood additions elevated the amount of soil C recovered as light fraction material but also elevated mineralization during incubation compared with other DIRT treatments, suggesting that not all of the added soil C is directly stabilized. Aboveground needle litter additions, which are more N‐rich than wood debris, resulted in accelerated mineralization of previously stored soil carbon. In summary, our work demonstrates that the dominant plant sources of SOM differed substantially between forest types. Furthermore, inputs to and losses from soil C pools likely will not be altered uniformly by changes in litter input rates.     

Variable temperature sensitivity of soil organic carbon in North American forests

We investigated mean residence time (MRT) for soil organic carbon (SOC) sampled from paired hardwood and pine forests located along a 22 °C mean annual temperature (MAT) gradient in North America. We used acid hydrolysis fractionation, radiocarbon analyses, long-term laboratory incubations (525-d), and a three-pool model to describe the size and kinetics of the acid insoluble C (AIC), active and slow SOC fractions in soil. We found that active SOC was 2 ± 0.2% (mean ± SE) of total SOC, with an MRT of 33 ± 6 days that decreased strongly with increasing MAT. In contrast, MRT for slow SOC and AIC (70 ± 6% and 27 ± 6% of total SOC, respectively) ranged from decades to thousands of years, and neither was significantly related to MAT. The accumulation of AIC (as a percent of total SOC) was greater in hardwood than pine stands (36% and 21%, respectively) although the MRT for AIC was longer in pine stands. Based on these results, we suggest that the responsiveness of most SOC decomposition in upland forests to global warming will be less than currently modeled, but any shifts in vegetation from hardwood to pine may alter the size and MRT of SOC fractions.     

Evaluation of Factors Restricting Distribution of the Endangered Key Largo Woodrat

ABSTRACT We examined a suite of models in an information theoretic framework to identify factors restricting presence of the endangered Key Largo woodrat (Neotoma floridana smalli) throughout its remaining habitat. Models containing variables related to availability of nest sites and mammalian predator abundances were supported by our data. Abundance of natural (large overstory trees) and artificial (rock and debris piles) nest substrate were the most important predictor variables, followed by indices of feral cat and raccoon (Procyon lotor) abundance. We recommend increasing abundance of nest substrate in the short term through addition of artificial nest substrate and in the long term through continued protection of remaining forest habitat.     

Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci

To study the role of type III-secreted effectors in the host adaptation of the tobacco ( Nicotiana sp.) pathogen Pseudomonas syringae pv. tabaci , a selection of seven strains was first characterized by multilocus sequence typing (MLST) to determine their phylogenetic affinity. MLST revealed that all strains represented a tight phylogenetic group and that the most closely related strain with a completely sequenced genome was the bean ( Phaseolus vulgaris ) pathogen P. syringae pv. phaseolicola 1448A. Using primers designed to 21 P. syringae pv. phaseolicola 1448A effector genes, it was determined that P. syringae pv. phaseolicola 1448A shared at least 10 effectors with all tested P. syringae pv. tabaci strains. Six of the 11 effectors that failed to amplify from P. syringae pv. tabaci strains were individually expressed in one P. syringae pv. tabaci strain. Although five effectors had no effect on phenotype, growth in planta and disease severity of the transgenic P. syringae pv. tabaci expressing hopQ1-1 _Pph1448A were significantly increased in bean, but reduced in tobacco. We conclude that hopQ1-1 has been retained in P. syringae pv. phaseolicola 1448A, as this effector suppresses immunity in bean, whereas hopQ1-1 is missing from P. syringae pv. tabaci strains because it triggers defences in Nicotiana spp. This provides evidence that fine-tuning effector repertoires during host adaptation lead to a concomitant reduction in virulence in non-host species.     

Tradeoffs and thresholds in the effects of nitrogen addition on biodiversity and ecosystem functioning: evidence from inner Mongolia Grasslands

Nitrogen (N) deposition is widely considered an environmental problem that leads to biodiversity loss and reduced ecosystem resilience; but, N fertilization has also been used as a management tool for enhancing primary production and ground cover, thereby promoting the restoration of degraded lands. However, empirical evaluation of these contrasting impacts is lacking. We tested the dual effects of N enrichment on biodiversity and ecosystem functioning at different organizational levels (i.e., plant species, functional groups, and community) by adding N at 0, 1.75, 5.25, 10.5, 17.5, and 28.0 g N m^?2 yr^?1 for four years in two contrasting field sites in Inner Mongolia: an undisturbed mature grassland and a nearby degraded grassland of the same type. N addition had both quantitatively and qualitatively different effects on the two communities. In the mature community, N addition led to a large reduction in species richness, accompanied by increased dominance of early successional annuals and loss of perennial grasses and forbs at all N input rates. In the degraded community, however, N addition increased the productivity and dominance of perennial rhizomatous grasses, with only a slight reduction in species richness and no significant change in annual abundance. The mature grassland was much more sensitive to N‐induced changes in community structure, likely as a result of higher soil moisture accentuating limitation by N alone. Our findings suggest that the critical threshold for N‐induced species loss to mature Eurasian grasslands is below 1.75 g N m^?2 yr^?1, and that changes in aboveground biomass, species richness, and plant functional group composition to both mature and degraded ecosystems saturate at N addition rates of approximately 10.5 g N m^?2 yr^?1. This work highlights the tradeoffs that exist in assessing the total impact of N deposition on ecosystem function.