Free Vehicles and Deep-Sea Biology

SYNOPSIS. A free vehicle is a timed and weighted device releasedfrom a ship in a free fall to the ocean bottom. Instrumentscarried on the free vehicle have been built to take biologicalsamples, sediment samples, water samples, and photographs, andto measure currents, tides, and temperature. The instrumentthen returns to the surface where it is recovered by the ship.A free vehicle system for biological sampling in the deep seais described in detail. It consists of a mast assembly, flotation,hookline and traps, and a magnesium release attached to weights.Different types of magnesium links used include a rod, a wireon pliers, and a series of diamond-shaped beads that drop througha hole after dissolving. A deck plan for launching the freevehicle and its retrieval at sea are described.     

A Lecithinase from the Amoeba Hartmannella rhysodes*

SYNOPSIS A lipogenic toxin produced by the amoeba Hartmannella rhysodes, Fernald strain, made mammalian cells in culture round up and fill with fat droplets. From this toxin an enzyme was obtained with lecithinase and lysolecithinase activities. This enzyme is different from any isolated elsewhere. When purified enzyme was added to strain L mouse fibroblasts in culture, the cells rounded up and became fatty. Much of the lipogenic activity of the original toxin can be ascribed to this enzyme.     

Seasonal monogamy and multiple paternity in a wild population of a territorial reptile (tuatara)

Investigating the mating system of a population provides insight into the evolution of reproductive patterns, and can inform conservation management of threatened or endangered species. Combining behavioural and genetic data is necessary to fully understand the mating system and factors affecting male reproductive success, yet behavioural data are often difficult to collect for threatened species. In the present study, we use behavioural data and paternity analyses to characterize the mating system of a high density population of a long-lived, ancient reptile (tuatara, Sphenodon punctatus ). We further investigate the phenotypic traits (including body size, body condition, tail length, and ectoparasite load) that affect male reproductive success. Our behavioural data reflect a seasonally monogamous system with low levels of polyandry and polygyny that are consistent with male mate guarding. Male reproduction is highly skewed (only 25–30% of males are successful), and body size is the primary predictor of male reproductive success. Based on the genetic data, multiple paternity was found in only 8% of clutches, and the results of the paternity analyses showed monandrous clutches from socially polyandrous females. Our behavioural and genetic results revealed complexities in female mating patterns that support the potential for cryptic female choice or sperm competition. This warrants further experimental investigation into the mechanisms underlying reptile fertilization and the disparities between social and genetic polyandry in wild populations.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 161–170.     

Evolution of host breadth in broad interactions: mycorrhizal specificity in East Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts

Host breadth is often assumed to have no evolutionary significance in broad interactions because of the lack of cophylogenetic patterns between interacting species. Nonetheless, the breadth and suite of hosts utilized by one species may have adaptive value, particularly if it underlies a common ecological niche among hosts. Here, we present a preliminary assessment of the evolution of mycorrhizal specificity in 12 closely related orchid species (genera Goodyera and Hetaeria) using DNA‐based methods. We mapped specificity onto a plant phylogeny that we estimated to infer the evolutionary history of the mycorrhiza from the plant perspective, and hypothesized that phylogeny would explain a significant portion of the variance in specificity of plants on their host fungi. Sampled plants overwhelmingly associated with genus Ceratobasidium, but also occasionally with some ascomycetes. Ancestral mycorrhizal specificity was narrow in the orchids, and broadened rarely as Goodyera speciated. Statistical tests of phylogenetic inertia suggested some support for specificity varying with increasing phylogenetic distance, though only when the phylogenetic distance between suites of fungi interacting with each plant taxon were taken into account. These patterns suggest a role for phylogenetic conservatism in maintaining suits of fungal hosts among plants. We stress the evolutionary importance of host breadth in these organisms, and suggest that even generalists are likely to be constrained evolutionarily to maintaining associations with their symbionts.     

Hydrological and biogeochemical controls on the timing and magnitude of nitrous oxide flux across an agricultural landscape

Anticipated increases in precipitation intensity due to climate change may affect hydrological controls on soil N₂O fluxes, resulting in a feedback between climate change and soil greenhouse gas emissions. We evaluated soil hydrologic controls on N₂O emissions during experimental water table fluctuations in large, intact soil columns amended with 100 kg ha^?1 KNO₃‐N. Soil columns were collected from three landscape positions that vary in hydrological and biogeochemical properties (N= 12 columns). We flooded columns from bottom to surface to simulate water table fluctuations that are typical for this site, and expected to increase given future climate change scenarios. After the soil was saturated to the surface, we allowed the columns to drain freely while monitoring volumetric soil water content, matric potential and N₂O emissions over 96 h. Across all landscape positions and replicate soil columns, there was a positive linear relationship between total soil N and the log of cumulative N₂O emissions (r²= 0.47; P= 0.013). Within individual soil columns, N₂O flux was a Gaussian function of water‐filled pore space (WFPS) during drainage (mean r²= 0.90). However, instantaneous maximum N₂O flux rates did not occur at a consistent WFPS, ranging from 63% to 98% WFPS across landscape positions and replicate soil columns. In contrast, instantaneous maximum N₂O flux rates occurred within a narrow range (?1.88 to ?4.48 kPa) of soil matric potential that approximated field capacity. The relatively consistent relationship between maximum N₂O flux rates and matric potential indicates that water filled pore size is an important factor affecting soil N₂O fluxes. These data demonstrate that matric potential is the strongest predictor of the timing of N₂O fluxes across soils that differ in texture, structure and bulk density.     

Beyond aflatoxin: four distinct expression patterns and functional roles associated with Aspergillus flavus secondary metabolism gene clusters

Species of Aspergillus produce a diverse array of secondary metabolites, and recent genomic analysis has predicted that these species have the capacity to synthesize many more compounds. It has been possible to infer the presence of 55 gene clusters associated with secondary metabolism in Aspergillus flavus ; however, only three metabolic pathways—aflatoxin, cyclopiazonic acid (CPA) and aflatrem—have been assigned to these clusters. To gain an insight into the regulation of and to infer the ecological significance of the 55 secondary metabolite gene clusters predicted in A. flavus, we examined their expression over 28 diverse conditions. Variables included culture medium and temperature, fungal development, colonization of developing maize seeds and misexpression of laeA , a global regulator of secondary metabolism. Hierarchical clustering analysis of expression profiles allowed us to categorize the gene clusters into four distinct clades. Gene clusters for the production of aflatoxins, CPA and seven other unknown compound(s) were identified as belonging to one clade. To further explore the relationships found by gene expression analysis, aflatoxin and CPA production were quantified under five different cell culture environments known to be conducive or nonconducive for aflatoxin biosynthesis and during the colonization of developing maize seeds. Results from these studies showed that secondary metabolism gene clusters have distinctive gene expression profiles. Aflatoxin and CPA were found to have unique regulation, but are sufficiently similar that they would be expected to co-occur in substrates colonized with A. flavus .     

Agrarian legacy in soil nutrient pools of urbanizing arid lands

Today's worldwide expansion of dry land cities consumes cultivated and native ecosystems, providing laboratories for investigating imprints of former land use in places where people now live. Around Phoenix, USA, we compared soil nutrient pools in residential yards converted from farms with nutrient pools in yards developed on native desert. Organic matter, carbon (C), nitrogen (N), and soluble ions were >2-fold greater in yards that were previously agrarian than in yards that were not. These pools remain elevated 40 years after land conversion to residential use. Present N accumulation (1.5 g m⁻² yr⁻¹) is not affected by prior land use, suggesting that rates of residential fertilizer application and retention are not affected by antecedent soil fertility. Bioavailable, inorganic phosphorus (P_av) is elevated in soil with a recent agrarian past, but this signal disappears after 10–30 years of residential use owing to an accumulation of P_av in never-farmed yards. Our results indicate a 'direct agrarian legacy,' wherein agrarian amendment of nutrient pools endures urbanization, more so than an 'indirect legacy,' wherein present land management is molded by former land use. Agriculture in dry lands thus sequesters material in soils, and—as we also found higher material contents in residential soils than in contemporary agrarian soils—residential land use simply adds to the agrarian legacy these soils already bear. Intense human use of arid lands may cause increases in material pools in soils, a condition with potential global consequence.