Importance of drought on the distribution of the birds nest fern,Asplenium nidus,in the canopy of a lowland tropical rainforest in north‐eastern Australia

Abstract The birds nest fern, Asplenium nidus, contributes greatly to the epiphytic biomass in the canopies of both south‐east Asia and tropical north Queensland rainforests. It is generally believed that their abundance and their capacity to store water is an important feature for habitat fragmentation in the canopy. We investigated the microclimate of A. nidus and the effects of severe drought periods on the A. nidus population over a 20‐year period, hypothesizing that water availability is the most important factor controlling the population under drought conditions. One of two neighbouring A. nidus plants of the same size and age was irrigated artificially before, during and after a significant dry period in 2000. By monitoring the microclimate within and around both ferns we were able to estimate that four continuous weeks of rainless weather completely dried out the accumulated humus of the non‐irrigated A. nidus fern. Prolonged dry periods were shown to kill the roots of A. nidus, which attach the fern to the bark and eventually the affected A. nidus on verticals stems fell to the ground. Periods longer than 8 weeks may even kill adult plants sitting in more protected branch forks. Analysis of the whole A. nidus population within the 1‐ha Canopy Crane plot and the determination of the morphological age of all plants enabled an evaluation of the historical development of the population. The oldest plant originated in 1985, just 1 year after the longest recorded drought for the site. We suspect that the 1984 drought killed every A. nidus plant within the study plot. Years with low recruitment coincide with years with long drought periods.     

Excising stem samples underwater at native tension does not induce xylem cavitation

Xylem resistance to water stress‐induced cavitation is an important trait that is associated with drought tolerance of plants. The level of xylem cavitation experienced by a plant is often assessed as the percentage loss in conductivity (PLC) at different water potentials. Such measurements are constructed with samples that are excised underwater at native tensions. However, a recent study concluded that cutting conduits under significant tension induced cavitation, even when samples were held underwater during cutting. This resulted in artificially increased PLC because of what we have termed a ‘tension‐cutting artefact’. We tested the hypothesized tension‐cutting artefact on five species by measuring PLC at native tension compared with after xylem tensions had been relaxed. Our results did not support the tension‐cutting artefact hypothesis, as no differences were observed between native and relaxed samples in four of five species. In a fifth species (Laurus nobilis), differences between native and relaxed samples appear to be due to vessel refilling rather than a tension‐cutting effect. We avoided the tension‐cutting artefact by cutting samples to slightly longer than their measurement length and subsequent trimming of at least 0.5 cm of sample ends prior to measurement.     

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species

Bacterial populations can display high levels of genetic structuring but the forces that influence this are incompletely understood. Here, by combining modelling approaches with multilocus sequence data for the zoonotic pathogen Campylobacter, we investigated how ecological factors such as niche (host) separation relate to population structure. We analysed seven housekeeping genes from published C. jejuni and C. coli isolate collections from a range of food and wild animal sources as well as abiotic environments. By reconstructing genetic structure and the patterns of ancestry, we quantified C. jejuni host association, inferred ancestral populations, investigated genetic admixture in different hosts and determined the host origin of recombinant C. jejuni alleles found in hybrid C. coli lineages. Phylogenetically distinct C. jejuni lineages were associated with phylogenetically distinct wild birds. However, in the farm environment, phylogenetically distant host animals shared several C. jejuni lineages that could not be segregated according to host origin using these analyses. Furthermore, of the introgressed C. jejuni alleles found in C. coli lineages, 73% were attributed to genotypes associated with food animals. Our results are consistent with an evolutionary scenario where distinct Campylobacter lineages are associated with different host species but the ecological factors that maintain this are different in domestic animals such that phylogenetically distant animals can harbour closely related strains.     

A spatially explicit analysis to extrapolate carbon fluxes in upland tundra where permafrost is thawing

One of the most important changes in high‐latitude ecosystems in response to climatic warming may be the thawing of permafrost soil. In upland tundra, the thawing of ice‐rich permafrost can create localized surface subsidence called thermokarst, which may change the soil environment and influence ecosystem carbon release and uptake. We established an intermediate scale (a scale in between point chamber measurements and eddy covariance footprint) ecosystem carbon flux study in Alaskan tundra where permafrost thaw and thermokarst development had been occurring for several decades. The main goal of our study was to examine how dynamic ecosystem carbon fluxes [gross primary production (GPP), ecosystem respiration (R_eco), and net ecosystem exchange (NEE)] relate to ecosystem variables that incorporate the structural and edaphic changes that co‐occur with permafrost thaw and thermokarst development. We then examined how these measured ecosystem carbon fluxes responded to upscaling. For both spatially extensive measurements made intermittently during the peak growing season and intensive measurements made over the entire growing season, ecosystem variables including degree of surface subsidence, thaw depth, and aboveground biomass were selected in a mixed model selection procedure as the ‘best’ predictors of GPP, R_eco, and NEE. Variables left out of the model (often as a result of autocorrelation) included soil temperature, moisture, and normalized difference vegetation index. These results suggest that the structural changes (surface subsidence, thaw depth, aboveground biomass) that integrate multiple effects of permafrost thaw can be useful components of models used to estimate ecosystem carbon exchange across thermokarst affected landscapes.     

Bioethanol production from sugarcane and emissions of greenhouse gases – known and unknowns

Bioethanol production from sugarcane is discussed as an alternative energy source to reduce dependencies of regional economies on fossil fuels. Even though bioethanol production from sugarcane is considered to be a beneficial and cost‐effective greenhouse gas (GHG) mitigation strategy, it is still a matter of controversy due to insufficient information on the total GHG balance of this system. Aside from the necessity to account for the impact of land use change (LUC), soil N₂O emissions during sugarcane production and emissions of GHG due to preharvest burning may significantly impact the GHG balance. Based on a thorough literature review, we show that direct N₂O emissions from sugarcane fields due to nitrogen (N) fertilization result in an emission factor of 3.87±1.16% which is much higher than suggested by IPCC (1%). N₂O emissions from N fertilization accounted for 40% of the total GHG emissions from ethanol–sugarcane production, with an additional 17% from trash burning. If LUC‐related GHG emissions are considered, the total GHG balance turns negative mainly due to vegetation carbon losses. Our study also shows that major gaps in knowledge still exist about GHG sources related to agricultural management during sugarcane production, e.g. effects of irrigation, vinasse and filter cake application. Therefore, more studies are needed to assess if bioethanol from sugarcane is a viable option to reduce energy‐related GHG emissions.     

Non-random distribution among a guild of parasitoids: implications for community structure and host survival

Abstract 1. Immature stages of the gall midge, Asphondylia borrichiae, are attacked by four species of parasitoids, which vary in size and relative abundance within patches of the gall midge’s primary host plant, sea oxeye daisy (Borrichia frutescens). 2. In the current study, a bagging experiment found that the smallest wasp, Galeopsomyia haemon, was most abundant in galls exposed to natural enemies early in the experiment, when gall diameter is smallest, while the wasp with the longest ovipositor, Torymus umbilicatus, dominated the parasitoid community in galls that were not exposed until the 5th and 6th weeks when gall diameter is maximal. 3. Moreover, the mean number of parasitoids captured using large artificial galls were 70% and 150% higher compared with medium and small galls respectively, while stem height of artificial galls significantly affected parasitoid distribution. Galls that were level with the top of the sea oxeye canopy captured 60% more parasitoids compared with those below the canopy and 50% more than galls higher than the plant canopy. 4. These non‐random patterns were driven primarily by the differential distribution of the largest parasitoid, T. umbilicatus, which was found significantly more often than expected on large galls and the smallest parasitoid of the guild, G. haemon, which tended to be more common on stems level with the top of the plant canopy. 5. Large Asphondylia galls, especially those located near the top of the Borrichia canopy, were more likely to be discovered by searching parasitoids. Results using artificial galls were consistent with rates of parasitism of Asphondylia galls in native patches of sea oxeye daisy. Gall diameter was 19% greater and the rate of parasitism was reduced by almost 50% on short stems; as a result, gall abundance was 24% higher on short stems compared with ones located near the top of the plant canopy. 6. These results suggest that parasitoid community composition within galls is regulated by both interspecific differences in ovipositor length and preferences for specific gall size and/or stem length classes.     

Consequences of pH measurement errors

SUMMARY. 1. The pH range over which the effects of acidification on freshwater organisms become apparent may be quite narrow, in some cases less than half a pH unit. Therefore, accurate measurement is important, particularly in dilute surface waters near the biologically critical threshold of hydrogen ion activity.
2. A hypothetical example based on data from two species of fish illustrates the potential errors in predicting mean mortality when pH is measured by probes of varying accuracies, placing our results into an ecosystem management perspective. For a given error, there will be greater uncertainty in predicting mean mortality for species sensitive to increased hydrogen ion activity than for more tolerant species.
3. We review field pH measurement errors, and present unique laboratory (measurements at 1°C and under argon) and field comparisons of current instruments used for continuous, in situ pH monitoring, including the only instrument comparison in low conductivity waters during snow melt. Four operator or sampler-caused measurement errors and three electrode-caused pH measurement errors are illustrated with data from four common types of pH probes and meters.
4. Studies providing no confidence intervals for a set of pH measurements due to the lack of rigorous quality control and assurance procedures are of limited quantitative value to future investigators attempting to analyse temporal trends of surface water acidification. Management and policy decision attempts will remain seriously hampered until more interpretable results are routinely generated.