Biochemical and biophysical studies on the folding of the core region of the origin of replication of bacteriophage M13.

DNA oligonucleotides with the sequence corresponding to the plus strand origin of replication of the filamentous bacteriophage M13 are studied. Biochemical structure probing and UV melting studies, supplemented with initial NMR experiments, are used to investigate structural features of a 51-nucleotides long synthetic oligonucleotide and two oligonucleotides that are integral parts of this latter molecule. The results demonstrate the feasibility and complementarity of the use of methidiumpropyl.EDTA-Fe(II) and nuclease S1 in the structural analysis of small oligonucleotides. The bacteriophage origin region appears to comprise two hairpins. The first hairpin, which contains a cleavage site for the bacteriophage gene II protein, has a large and probably flexible loop. NMR as well as UV melting studies demonstrate that the second hairpin contains a stable three-membered loop. Both hairpins are present in the 51-mer, which forms a stable tertiary structure.     

Effect of homoeopathic medicines on daily burden of symptoms in children with recurrent upper respiratory tract infections.

OBJECTIVE--To investigate the intrinsic effects of individually prescribed homoeopathic medicines. DESIGN--Randomised double blind placebo controlled study. SETTING--Paediatric outpatient department of university hospital. PATIENTS--175 children with frequently recurring upper respiratory tract infections. Of the 170 children evaluable, 86 were randomised to homoeopathic medicines (47 boys, 39 girls; median age at start 4.2 years; median number of episodes in past year 4) and 84 to placebo (43 boys, 41 girls; median age at start 3.6 years; median number of episodes in past year 4). MAIN OUTCOME MEASURES--Mean score for daily symptoms, number of antibiotic courses, and number of adenoidectomies and tonsillectomies over one year of follow up. RESULTS--The mean daily symptom score was 2.61 in the placebo group and 2.21 in the treatment group (difference 0.41; 95% confidence interval -0.02 to 0.83). In both groups the use of antibiotics was greatly reduced compared with that in the year before entering the trial (from 73 to 33 in the treatment group and from 69 to 43 in the placebo group). The proportion of children in the treatment group having adenoidectomies was lower in the treatment group (16%, 8/50) than in the placebo group (21%, 9/42). The proportion having tonsillectomies was the same in both groups (5%). CONCLUSION--Individually prescribed homoeopathic medicines seem to add little to careful counselling of children with recurrent upper respiratory tract infection in reducing the daily burden of symptoms, use of antibiotics, and need for adenoidectomy and tonsillectomy.     

The profit of senescence in phytoseiid mites

Summary A long post-reproductive period in females under optimal conditions is common among phytoseiid mites which are specialized predators of Tetranychus-species. The resulting long life span provides the possibility to postpone or delay egg production during periods of prey scarcity, theoretically in both virgin and fertilized females. The latter are better as colonists. These specialized predators are also the most prolific phytoseiids. The unusual combination of large reproductive capacity and long life might be explained as an adaptation to widely fluctuating prey densities.     

Studies on the response ofAmblyseius bibens [Acarina: Phytoseiidae] to conditions of prey scarcity

Various aspects of the ability of the predacious miteAmblyseius bibens Blommers to survive under conditions of prey scarcity were studied in the laboratory. The presence of water considerably lengthened survival in the absence of food. An ability to pierce leaves was not observed in the predator. Walking speed was little affected by hunger, but declined with inanition. Activity (=percentage time spent walking) was greatest in well fed females, and decreased with increasing hunger, and eventually with inanition. Hence, the area searched per unit time decreased with increasing hunger and inanition. Hungry predators showed greater activity on more hairy leaves. Hungry predators became more restive in the presence of a cover. A webbed area was preferred (as resting place) by the predator, whether hungry or not. Gut content, and hence initial feeding, was only representative for the state of hunger, if the availibility of water was accounted for. Duration of the complete recovery (oviposition) in the presence of ample food provided a measure of the original inanition. Many kinds of pollen might serve as alternate food.     

Diapause termination and thermal requirements for postdiapause development inAphelinus mali at constant and fluctuating temperatures

Diapause termination under natural and simulated overwintering conditions, the effect of subzero temperature on postdiapause development and the relationship between postdiapause development rate and constant and fluctuating temperatures was studied in a Dutch population ofAphelinus mali Hald. (Hymenoptera: Aphelinidae).The rate of diapause termination was similar in larvae overwintering under natural and simulated conditions. Most larvae had terminated diapause by the last week of February. Some female larvae may have remained in diapause until the end of March. The exposure of postdiapause larvae to –10°C for two weeks did not affect their survival or postdiapause development rate.PostdiapauseA. mali larvae could complete development and the adults emerge from their mummified aphid hosts at constant temperatures from 12 to 24°C. Although some larvae completed postdiapause development at 10°C, few emerged. The theoretical threshold temperature (t_o) for postdiapause development was 9.4°C and the thermal constant (K) 136.4 degree-days. K was 121.4 and 134.8 for first and 50% emergence, respectively.The number of heat units accumulating above 9.4°C to 1st and 50% emergence was similar under constant and fluctuating temperatures.

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Fin de la diapause et exigences thermiques pour le développement après la diapause d'Aphelinus mali soumis à des températures constantes ou à des thermopériodes

Résumé L'achèvement de la diapause en conditions naturelles ou simulant l'hiver, les effets des températures inférieures à zéro sur le développement après la diapause et les relations entre la vitesse de développement après la diapause et les températures constantes ou en thermopériodes ont été examinés sur des populations néerlandaises d'A. mali (Hymenop.; Aphélinidae).Les taux d'achèvement de la diapause de larves hivernantes étaient semblables en conditions naturelles ou simulées. La plupart des larves ont terminé leur diapause la dernière semaine de février. Quelques larves femelles sont restées en diapause jusqu'à fin mars. L'exposition pendant 2 semaines des larves sorties de diapause à –10 °C ne compromet pas leur survie ou leur taux de développement après la diapause.Les larves ayant diapause peuvent terminer leur développement et les adultes émerger des pucerons momifiés aux températures constantes comprises entre 12 et 24 °C. Bien que quelques larves achèvent leur développement à 10 °C, peu émergent. La température seuil théorique de développement après la diapause (t_o) a été de 9,4 °C et la constante thermique (K), 136,5 degrés-jours. Pour la première émergence et pour 50% d'émergences, les valeurs de K étaient respectivement: 121,4 et 134,8.Le nombre d'unités thermiques pour la première émergence et pour 50% d'émergences était le même à température constante ou avec une thermopériode.

     

Embryonic development of orchard leafrollers and the forecasting of egg hatch

The development time of eggs of three of the most noxious leafrollers found in Northeuropean orchards, Spilonota ocellana (Denis & Schiffermüller), Archips podana (Scopoli), and Pandemis heparana (Denis & Schiffermüller) (Lepidoptera: Tortricidae) was recorded in the laboratory at five constant temperatures between 14 and 25°C. In this range, developmental rates of the three species did not differ significantly. While the flight periods of these species overlap largely, a single algorithm could be used to devise optimal spraying time(s) for the three species.     

Crystal structure of human estrogen-related receptor alpha in complex with a synthetic inverse agonist reveals its novel molecular mechanism

Inverse agonists of the constitutively active human estrogen-related receptor alpha (ERRalpha, NR3B1) are of potential interest for several disease indications (e.g. breast cancer, metabolic diseases, or osteoporosis). ERRalpha is constitutively active, because its ligand binding pocket (LBP) is practically filled with side chains (in particular with Phe(328), which is replaced by Ala in ERRbeta and ERRgamma). We present here the crystal structure of the ligand binding domain of ERRalpha (containing the mutation C325S) in complex with the inverse agonist cyclohexylmethyl-(1-p-tolyl-1H-indol-3-ylmethyl)-amine (compound 1a), to a resolution of 2.3A(.) The structure reveals the dramatic multiple conformational changes in the LBP, which create the necessary space for the ligand. As a consequence of the new side chain conformation of Phe(328) (on helix H3), Phe(510)(H12) has to move away, and thus the activation helix H12 is displaced from its agonist position. This is a novel mechanism of H12 inactivation, different from ERRgamma, estrogen receptor (ER) alpha, and ERbeta. H12 binds (with a surprising binding mode) in the coactivator groove of its ligand binding domain, at a similar place as a coactivator peptide. This is in contrast to ERRgamma but resembles the situation for ERalpha (raloxifene or 4-hydroxytamoxifen complexes). Our results explain the novel molecular mechanism of an inverse agonist for ERRalpha and provide the basis for rational drug design to obtain isotype-specific inverse agonists of this potential new drug target. Despite a practically filled LBP, the finding that a suitable ligand can induce an opening of the cavity also has broad implications for other orphan nuclear hormone receptors (e.g. the NGFI-B subfamily).     

Biocontrol of Pests of Apples and Pears in Northern and Central Europe: 2. Parasitoids

The parasitoids of arthropod pests of apple and pear in northern and central Europe and their use as biological control agents are reviewed. The review demonstrates that apple and pear pests are host to a large and varied parasitoid fauna. All important pests are known to be host of parasitoids, but many parasitoids play only a minor part in regulating populations of their host. However, many parasitoid species are important natural enemies and some effectively regulate pest populations in unsprayed and/or commercial (insecticide sprayed) apple or pear orchards either individually or as part of parasitoid guilds. Exploitation/fostering of existing populations of parasitoids has been demonstrated to be an effective or partially effective approach for natural control of several important pest species. Important examples include natural regulation of the apple sawfly by Lathrolestes ensator and Aptesis nigrocincta, of the summer fruit tortrix moth by Colpoclypeus florus and Teleutaea striata, of leaf midges by Platygaster demades, of woolly aphid by Aphelinus mali and of leaf mining moths by guilds of parasitoid species. Introduction of parasitoids is an alternative approach to the exploitation of parasitoids already present in the orchard. This approach has been little explored and its success rate has been low, mainly confined to the control of non-indigenous pests by introducing parasitoids from their native region. Mass production methods for parasitoids are difficult and costly and are likely to be economic only where long-term populations can be established. Even where low cost mass culture techniques are developed, the degree of control may not be high enough to prevent economic pest damage as demonstrated by negative results with mass release of Trichogramma egg parasites for control of tortricids in orchards. Suitability of the orchard habitat is recognized as crucial to the success of individual parasitoids. Key requirements are adequate populations of the pest(s) and/or alternative hosts, suitable shelter, overwintering sites or food sources and avoidance of harmful effects of pesticides. Many species are highly sensitive to broad-spectrum insecticides, especially in the adult life-stage. Avoiding the harmful affects of insecticides is crucial to successful exploitation. The use of insecticides needs to be avoided, either altogether or at crucial times in the parasitoids' life cycle, or less harmful alternatives need to be used. Numerous parasitoids could potentially be exploited as biological control agents but hitherto have received little attention because little is known about them and/or because they are sensitive to broad-spectrum pesticides and are thus virtually absent from commercial orchards. The aim of future studies should be to develop effective strategies for establishing equilibria between important pests and their parasitoids, with pest damage rarely exceeding the economic threshold.     

Effects of base sequence on the loop folding in DNA hairpins

High-resolution NMR and UV-melting experiments have been used to study the hairpin formation of partly self-complementary DNA fragments in an attempt to derive rules that describe the folding in these molecules. Earlier experiments on the hexadecanucleotide d(ATCCTA-TTTT-TAGGAT) had indicated that within the loop of four thymidines a wobble T-T pair is formed (Blommers et al., 1987). In the present paper it is shown that if the first and the last thymines of the intervening sequence are replaced by complementary bases, sometimes base pairs can be formed. Thus for the intervening sequences -CTTG- and -TTTA- with the pyrimidine in the 5'-position and the purine in the 3'-position, a base pair is formed leading to a loop consisting of two residues. For the intervening sequences -GTTC- and -ATTT- with the purine in the 5'-position and the pyrimidine in the 3'-position, this turns out not to be the case. It was found that it made no difference when the four-membered sequence was closed by a G-C base pair or an A-T base pair. Replacement of the two central thymidine residues by the more bulky adenine residues limits the hairpin to a four-membered loop scheme. Very surprisingly, it was found from 2D NOE experiments that the T-A base pair, formed in the loop consisting of the -TTTA- sequence, is a Hoogsteen pair. It is argued that the pairing of the bases in this scheme may facilitate the formation of a loop of two residues, since the distance of the C1' atoms in this base pair is 8.6 A instead of 10.4 A found in the canonical Watson-Crick base pair. Combination of the data obtained for the series of DNA fragments studied shows that the results can be explained by a simple, earlier proposed, loop folding principle which assumes that the folding of the four-membered loop is dictated by the stacking of the double-helical stem of the hairpin.