The phylogeny of human globin genes investigated by the maximum parsimony method

Gene phylogenetic trees were constructed by the maximum parsimony method for various sets of ninety six globin chain amino acid sequences spanning plant and animal kingdoms. The method, executed by several computer programs, constructed ancestor and descendant globin messengers on tree topologies which required the least number of nucleotide replacements to account for the evolution of the globins. The human myoglobin-hemoglobin divergence was traced to a gene duplication which occurred either in the first vertebrates or earlier yet in the common ancestor of chordates and annelids, the alpha-beta divergence to a gene duplication in the common ancestor of teleosts and tetrapods, the gamma divergence from typical beta chains to a gene duplication in basal therian mammals, and the delta separation from beta to a duplication in the basal catarrhine primates. Evidence was provided by the globin phylogenies for the hominoid affinities of the gibbon and the close phyletic relationship of the African apes to man. Over the period of teleos-tetrapod divergence the globin messengers evolved at an average rate of 18.5 nucleotide replacements per 100 codons per 10⁸ years, a faster rate than most previous estimates. Very fast and very slow rates were encountered in different globin lineages and at different stages of descent, reducing the effectiveness of globins as molecular clocks. Rates increased with gene duplication and decreased after selection discovered useful specializations in the products of genes which had previously been freer to accept mutations. The early eutherian radiation was characterized by rapid rates of globin evolution, but the later hominoid radiation by extremely slow rates. This pattern was related to more complicated grades of internal organization evolving in human ancestors. The types of nucleotide replacements in the globin messengers over the long course of globin evolution did not seem indicative of any special mutational mechanisms.     

Zostera capensis setchell: III. Some aspects of wall ingrowth development in leaf blade epidermal cells

Summary The development of wall ingrowths in leaf blade epidermal cells of the marine angiospermZostera capensis was studied by electron microscopy. Prior to the appearance of ingrowths long profiles of endoplasmic reticulum cisternae become arranged peripherally closely following the contours of the walls. The plasmalemma assumes a wavy appearance and in regions where wall ingrowths first start forming (i.e., along the radial, inner tangential and transverse walls) the plasmalemma becomes separated from the walls by an undulating extracytoplasmic space. Small, irregular projections of secondary wall material make their appearance here. Paramural bodies, dictyosomes, endoplasmic reticulum (ER) and possibly also microtubules seem to be closely associated with the initiation and subsequent development of wall projections. As the cells mature, new ingrowths arise in a centrifugal direction along the radial and transverse walls. When wall ingrowths reach a certain stage of their development, mitochondria become strongly polarized towards them and become closely associated with the plasmalemma which ensheaths the ingrowths. There is often also a close association between ER cisternae and the involuted plasmalemma of the wall projections. Initially ingrowths are slender, curved structures, but become more complex as the cells mature. Ingrowths are most extensively developed along the inner tangential and transverse walls. As epidermal cells age there is a loss of wall material from the ingrowths. The probable significance of the formation of wall ingrowths in the epidermal cells is also discussed.     

Aging alters properties of the circadian pacemaker controlling the locomotor activity rhythm in males of Drosophila nasuta

Effects of aging on the circadian rhythm of locomotor activity in males of Drosophila nasuta were investigated. The adult life of males was divided in 1-3 stages according to spontaneous changes in free-running period x in constant darkness (DD): stage 1, days 1-19; stage 2, days 20-36; stage 3, days 37-43. Stage 1 was characterized by a bimodal activity pattern with a short light-induced morning peak and a prolonged evening peak when the flies were entrained to light-dark cycles of 12 hours of light, 12 hours of darkness (LD 12:12). The morning peak had a phase angle difference Ψ_m (Ψ, the time from lights on in LD 12:12 cycles to the onset of morning peak) of about 0.1h, while Ψ_e (Ψ of evening peak) was about 9h at stage 1. The transient morning peak was curtailed at the end of stage 1. At stage 2, the Ψ_e was about 10h, and the activity end was delayed by an addition of about 3h of activity in the scotophase. The changes in W during DD free runs were determined in two groups of flies: flies reared in LD 12:12 and flies reared in DD. In both groups, W increased from about 23h at stage 1 to about 25h at stage 2. Stage 3 was characterized by arrhythmicity associated with highest mean activity level (total number of passes/fly/day) in the entrained and both free-running groups. The mean activity level increased significantly from stage 1 to stage 3 in all three groups of flies.     

Two oscillators might control the locomotor activity rhythm of the high-altitude Himalayan strain of Drosophila helvetica

The properties of the pacemaker controlling the adult locomotor activity rhythm of the high-altitude Himalayan (haH) strain (Hemkund Sahib, 4121 m above sea level) of Drosophila helvetica are strikingly different from those of the low-altitude Himalayan (laH) strain (Birahi, 1132 m above sea level) of the same species. The haH strain has a unimodal activity pattern with a delayed peak occurring about 4.5 h after lights-on of the entraining light-dark (LD) cycle, while the laH strain has a bimodal activity pattern with the morning and evening peaks. It is rather unusual for a wild type strain of any Drosophila species to have a unimodal activity pattern during entrainment as observed in the haH strain. The single activity peak of the haH strain is regarded as a consequence of delayed morning peak merging with the evening one. Three experiments were performed to test this hypothesis. The first experiment examined whether the single activity peak could be dissociated into two components by LD cycles in which photoperiods varied from 10 to 16 h per 24 h. The haH strain again exhibited a unimodal activity pattern with a delayed peak in 10, 12, and 14 h photoperiods but a bimodal activity pattern in 16 h photoperiod. The laH strain had bimodality in 10 and 12 h photoperiods, unimodality in a 14 h photoperiod, but complete arrhythmicity in a 16 h photoperiod. In the second experiment, the haH flies were transferred from LD 16:8 to LL at 5 lux to confirm whether the bimodality of this strain in LD 16:8 cycles was not the result of masking by the long photoperiod of 16 h. Bimodality of the haH strain persisted in LL too; moreover, the morning component free-ran with period (tau) <24 h, while the evening component free-ran with tau>24 h. The third experiment examined the LL-induced splitting of activity peak of the haH strain. Flies were transferred from LD 12:12 cycles to LL at 0, 1, 5, and 15 lux. The haH strain was rhythmic in LL at 0 and 1 lux with a unimodal activity pattern. It was also rhythmic in LL at 5 lux, but the single activity peak was split into two discrete components; the morning component free-ran with tau<24 h, while the evening component free-ran with tau>24 h. This strain, however, was completely arrhythmic in LL at 15 lux. The laH strain was uniformly arrhythmic in LL at all levels of light intensity. These results suggest that the single but late activity component of the haH strain during entrainment appears to be the consequence of merging the delayed morning peak with the evening one as an adaptation to the environmental conditions at the altitude of origin of this strain, where these flies begin activity in the forenoon owing to non-permissible low temperature in the morning.     

Latitudinal variation in oviposition rhythm of Drosophila ananassae strains originating from the equator to subtropics

Parameters of oviposition rhythm of Drosophila ananassae strains originating from the equator, 0°N to 22.29°N were variable and latitude dependent. Phase angle difference (Ψ), amplitude of rhythm (R) and the percent oviposition in photophase (POP) were determined in LD 12:12 cycles. Although the R did not vary, the Ψ and POP varied by ∼5 h and 60, respectively. Ψ was positively correlated while the POP was negatively correlated with latitude. Transfers from LD 12:12 cycles to constant darkness initiated free-running rhythms in all strains. Although the R did not vary, the τ varied by ∼3.5 h which was positively correlated with latitude.     

Building up and breaking down: mechanisms controlling recombination during replication

The complete and faithful duplication of the genome is an essential prerequisite for proliferating cells to maintain genome integrity. This objective is greatly challenged by DNA damage encountered during replication, which causes fork stalling and in certain cases, fork breakage. DNA damage tolerance (DDT) pathways mitigate the effects on fork stability induced by replication fork stalling by mediating damage-bypass and replication fork restart. These DDT mechanisms, largely relying on homologous recombination (HR) and specialized polymerases, can however contribute to genome rearrangements and mutagenesis. There is a profound connection between replication and recombination: recombination proteins protect replication forks from nuclease-mediated degradation of the nascent DNA strands and facilitate replication completion in cells challenged by DNA damage. Moreover, in case of fork collapse and formation of double strand breaks (DSBs), the recombination factors present or recruited to the fork facilitate HR-mediated DSB repair, which is primarily error-free. Disruption of HR is inexorably linked to genome instability, but the premature activation of HR during replication often leads to genome rearrangements. Faithful replication necessitates the downregulation of HR and disruption of active RAD51 filaments at replication forks, but upon persistent fork stalling, building up of HR is critical for the reorganization of the replication fork and for filling-in of the gaps associated with discontinuous replication induced by DNA lesions. Here we summarize and reflect on our understanding of the mechanisms that either suppress recombination or locally enhance it during replication, and the principles that underlie this regulation.     

Two Oscillators Might Control the Locomotor Activity Rhythm of the High‐Altitude Himalayan Strain of Drosophila Helvetica

The properties of the pacemaker controlling the adult locomotor activity rhythm of the high‐altitude Himalayan (haH) strain (Hemkund Sahib, 4121 m above sea level) of Drosophila helvetica are strikingly different from those of the low‐altitude Himalayan (laH) strain (Birahi, 1132 m above sea level) of the same species. The haH strain has a unimodal activity pattern with a delayed peak occurring about 4.5 h after lights‐on of the entraining light‐dark (LD) cycle, while the laH strain has a bimodal activity pattern with the morning and evening peaks. It is rather unusual for a wild type strain of any Drosophila species to have a unimodal activity pattern during entrainment as observed in the haH strain. The single activity peak of the haH strain is regarded as a consequence of delayed morning peak merging with the evening one. Three experiments were performed to test this hypothesis. The first experiment examined whether the single activity peak could be dissociated into two components by LD cycles in which photoperiods varied from 10 to 16 h per 24 h. The haH strain again exhibited a unimodal activity pattern with a delayed peak in 10, 12, and 14 h photoperiods but a bimodal activity pattern in 16 h photoperiod. The laH strain had bimodality in 10 and 12 h photoperiods, unimodality in a 14 h photoperiod, but complete arrhythmicity in a 16 h photoperiod.

In the second experiment, the haH flies were transferred from LD 16∶8 to LL at 5 lux to confirm whether the bimodality of this strain in LD 16∶8 cycles was not the result of masking by the long photoperiod of 16 h. Bimodality of the haH strain persisted in LL too; moreover, the morning component free‐ran with period (τ) <24 h, while the evening component free‐ran with τ>24 h. The third experiment examined the LL‐induced splitting of activity peak of the haH strain. Flies were transferred from LD 12∶12 cycles to LL at 0, 1, 5, and 15 lux. The haH strain was rhythmic in LL at 0 and 1 lux with a unimodal activity pattern. It was also rhythmic in LL at 5 lux, but the single activity peak was split into two discrete components; the morning component free‐ran with τ<24 h, while the evening component free‐ran with τ>24 h. This strain, however, was completely arrhythmic in LL at 15 lux. The laH strain was uniformly arrhythmic in LL at all levels of light intensity. These results suggest that the single but late activity component of the haH strain during entrainment appears to be the consequence of merging the delayed morning peak with the evening one as an adaptation to the environmental conditions at the altitude of origin of this strain, where these flies begin activity in the forenoon owing to non‐permissible low temperature in the morning.     

Comparison of cytology and distribution of nickel in roots of Ni-hyperaccumulating and non-hyperaccumulating genotypes of Senecio coronatus

Two genotypes of Senecio coronatus (Thunb.) Harv. (Asteraceae) growing on ultramafic outcrops were identified previously: a Ni hyperaccumulator and a non-hyperaccumulator. The aim of the present study was to investigate the cytology of the roots of both genotypes, their Ni content and tissue distribution, and to ascertain whether there was a cytological basis for the differential uptake of Ni. Light and fluorescence microscopy together with histochemical methods were used to study root cytology. X-ray microanalysis by means of a nuclear microprobe—particle-induced X-ray emission (PIXE) and proton backscattering (BS) techniques—was utilized to determine the concentration and distribution of Ni and other elements. Average concentration of Ni and distribution in roots differed significantly between hyperaccumulating and non-hyperaccumulating genotypes. Ni amount in the hyperaccumulating genotype was ca. 60 times higher in the older part of the root (1,760 μg g⁻¹) and ca. 10 times higher (314 μg g⁻¹) in the younger root hair region in comparison with the equivalent parts of the non-accumulating genotype where Ni amounts were 30 μg g⁻¹. Ni distribution pattern was also different in both cases. Cytological differences were observed in the inner cortical region and exodermis of the roots. Distinct groups of specialized cells with an organelle-rich cytoplasm that produced copious numbers of spherical bodies occurred in the inner cortical region of the hyperaccumulator. Such distinct cell groups were absent from the inner cortex of the non-hyperaccumulator. Cortical cells here had a thin parietal cytoplasmic layer and produced fewer spherical bodies. In both genotypes the spherical structures were extruded from the cytoplasm into air spaces between the cells where they coalesced to form amorphous deposits, significantly larger and more abundant in the hyperaccumulator. Histochemical tests identified these deposits as a mixture of lipids, alkaloids and terpenoids. Specialized cells present in the inner cortex of the hyperaccumulating genotype demonstrated significant relative Ni depletion in comparison with the adjacent inner cortex and phloem. Casparian bands were identified in exodermal cell walls of both genotypes but the bands fluoresced more intensely in the non-accumulator suggesting differences in chemical composition and probably also a more efficient apoplastic barrier. This feature was correlated with the observed Ni distribution pattern. The highest Ni enrichment in the hyperaccumulating genotype occurred in the outer cortex; 20 times more than in the adjacent epidermis/exodermis in older portions of roots and 3 times more than in the epidermis/exodermis in younger root hair regions. In contrast, in the non-hyperaccumulating genotype, a higher concentration of nickel was found in the epidermis/exodermis compared to the outer cortex. The Ni ratio between the outer cortex and epidermis/exodermis was about 0.4 in the non-hyperaccumulator. Different cytological features exhibited by the genotypes may represent adaptive responses to the presence of high concentrations of Ni in the soil and subsequent differential uptake of Ni. Basic characteristics and elemental content of soil collected from the close vicinity of roots of two S. coronatus genotypes are reported. Wojciech Przybyłowicz on leave from the Faculty of Physics and Applied Computer Science, AGH University of Science & Technology, Kraków, Poland