登革病毒NS3全基因的扩增与克隆

登革热(DF)、登革出血热及登革休克综合征(DHF/DSS)是由登革病毒所致的两种不同临床类型的急性传染病,广泛流行于全球热带及亚热带地区.DHF/DSS以高热、出血、休克、高病死率为主要特征,近年来其发病率有迅速增加的趋势,已成为严重影响人类健康的公共卫生问题.     

基于转录组的肝豆状核变性调控网络的构建和分析

本研究旨在利用生物信息学方法构建经铜诱导的ATP7B基因敲除HepG2细胞系的转录调控网络。探讨关键转录因子在肝豆状核变性发生、发展中的潜在作用机制。收集公共基因表达数据库（gene expression omnibus,GEO）中包含野生型、ATP7B基因敲除型、铜诱导的野生型和铜诱导的ATP7B基因敲除型HepG2细胞系数据。筛选由铜诱导产生的差异表达基因（differentially expressed genes,DEGs）后进行基因本体论（gene ontology,GO）、京都基因和基因组百科全书（Kyoto encyclopedia of genes and genomes,KEGG）富集分析。基于蛋白相互作用网络,识别疾病关键基因和功能模块,并对关键功能模块中的基因进行富集分析。最后,构建转录调控网络,筛选核心转录因子。共筛选出1 034个差异表达基因,其中上调525个,下调509个。上、下调关键功能模块分别包括了3 785个和3 931个基因。关键功能模块中的基因主要定位于细胞-基质连接、染色体、剪接复合体、核糖体等区域,共同参与了mRNA加工、组蛋白修饰、RNA剪切、DNA代谢调节、蛋白磷酸化等生物学过程,且与转录共调控活性、DNA转录因子结合、泛素样蛋白连接酶结合等分子功能相关。KEGG分析表明功能模块中的基因显著富集的通路包括乙型肝炎、有丝分裂原活化蛋白激酶（mitogen-activated protein kinase,MAPK）信号通路、细胞衰老和凋亡、神经营养信号通路和神经变性途径等。肝豆状核变性转录调控网络包括11个差异表达转录因子和96个差异表达基因,其中U2AF1、NFRKB、FUS、MAX、SRSF1、CEBPA和RXRA为核心差异表达转录因子。该研究为肝豆状核变性转录调控相关分子的生物学功能研究提供了重要的参考依据。     

Multilocus phylogeny defines a new classification of Staphylininae (Coleoptera,Staphylinidae), a rove beetle group with high lineage diversity

We provide the first multilocus molecular phylogeny of a group corresponding to the former subfamily Staphylininae. Results are corroborated by the morphological, biogeographical and palaeobiological evidence to serve as a baseline for an updated suprageneric classification. The former subfamily Staphylininae is proven to be a lineage sister to the monophyletic Paederinae and reclassified according to a robust phylogeny resolving a number of long-standing controversies. The subfamily Xantholininae (revised status) is reinstated to contain the tribes Xantholinini, Othiini, Maorothiini and Diochini. Subfamily Platyprosopinae (revised status) is reinstated for the tribes Platyprosopinini, Arrowinini and †Thayeralinini. For a highly peculiar genus Coomania Cameron, formerly in Diochini, a new subfamily Coomaniinae subfam.n. is established and the composition of Diochini (revised status) is changed accordingly. The subfamily Staphylininae (revised status) is reduced to contain the former tribe Staphylinini only. Elevating this mega-diverse tribe to the subfamily rank opened up an opportunity for its more fractional classification by raising several subtribes to the tribal level as follows: Acylophorini, Afroquediini, Amblyopinini, Antimerini, †Baltognathini, Cyrtoquediini, Erichsoniini, Hyptiomini, Indoquediini, Quediini and Tanygnathinini (revised status for all). As a result, the most species-rich tribe Staphylinini (revised status) is reduced to the more homogeneous lineage containing the subtribes Algonina, Anisolinina, Philonthina, Philothalpina, Staphylinina and Xanthopygina. Morphological synapomorphies and diagnostic characters supporting all newly defined higher taxa are provided. This published work has been registered on ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:DED8B042-83C9-4D10-B0CB-B50372B067A9 .     

Survival of caddis larvae in relation to their case material in a group of temporary and permanent pools

1. The occurrence of larvae of Limnephilus coenosus and L. vittatus (Trichoptera) was recorded in 103 rock pools both before and after the dry periods in spring–summer (April–May and July–early August), when a great number of the pools dried out. In early spring, 84% of the pools sampled contained larvae of at least one of the species. Limnephilus coenosus larvae were present in a higher proportion of pools that later dried out than in the permanent ones, while L. vittatus larvae were predominantly found in permanent pools. Larvae of both species were found together in 31% of the inhabited pools.
2. Laboratory experiments, designed to elucidate differential survival under drought conditions, demonstrated that the organic cases of L. coenosus larvae held water more efficiently than did the mineral L. vittatus cases. Full-grown (fifth instar) L. coenosus larvae also survived dry conditions better than did L. vittatus larvae. The higher survival of L. coenosus was due to a combination of drought-resistant case material and a higher survival ability of the larvae themselves.
3. Limnephilus vittatus larvae were restricted by their low capability to withstand desiccation, although case material and food were available for L. vittatus larvae in all pools. Absence of case material and high-quality food in many pools, however, restricted the presence of L. coenosus larvae, but this species did not suffer from heavy mortality because of desiccation and all pool populations of L. coenosus survived until pupation.
4. The differences in species composition in these temporary and permanent pools can be explained by the differential site selection by ovipositing females, as well as by larval survival. The intrinsically greater survival of L. coenosus larvae during drought, together with the water-retaining properties of the cases, allowed this species to exploit stressful and risky habitats, such as temporary pools.     

Nanosilica synthesis mediated by Aspergillus parasiticus strain

Rice husks (RHs) are plant waste materials abundant in phytoliths silica bodies. These were used as starting material for fungal-mediated biotransformation leading to the synthesis of a high-value added product. A strain of Aspergillus parasiticus was capable of transforming the amorphous silica conglomerates into structured nanoparticles (NPs) in the process of RHs biotransformation. Silica NPs were produced extracellularly and their size ranged from 3 to 400 nm depending on the biotransformation conditions and the post-biotransformation supernatant processing. To characterize the NP's structure and dimension, SEM, STEM, EDX and FTIR technics were applied. These demonstrated and confirmed that pyramid (400 nm), cubical (85 nm) and spherical (3 nm and 24 ± 8 nm) forms of silica NPs were obtained.     

Where buffalo and cattle meet: modelling interspecific contact risk using cumulative resistant kernels

African buffalo the primary source of foot and mouth disease (FMD) infection for livestock in South Africa. Predicting the spatial drivers and patterns of buffalo–cattle contact risk is crucial for developing effective FMD mitigation strategies. Therefore, the goal of this study was to predict fine‐scale, seasonal contact risk between cattle and buffaloes straying into communal lands adjacent to Kruger National Park. This study provides the first application of the cumulative resistant kernel method to calculate contact risk between two species. We built resistance surfaces from resource utilization models of buffalo and cattle and calculated the intersection of resistant kernels of the two species. This revealed that the contact risk is influenced by seasonality, water sources and fence strength, and the magnitude of contact risk is largely driven by buffalo and cattle dispersal abilities. The probability of contact was higher in the dry season, with hotspots along a main river and the weakest parts of the perimeter fence. In the wet season, contact risk was more diffuse and less concentrated along the main river and near settlements. The new approach of intersecting cumulative resistant kernels of two species can produce quantitative predictive maps of animals’ contact risk and help identify potential hotspots of disease transmission.     

近交系BALB/c小鼠及先天遗传性白内障突变型BALB/cBk-Cat小鼠的DNA指纹研究

采用人工合成的寡核苷酸探针(GATA)~4|分别与近交系小鼠BALB/c和经10年 30代培育而成的自发突变型近交系先天遗传性白内障BALB/cBk-Cat小鼠进行DNA分杂交,DNA指纹显示:(1)BALB/c小鼠个体之间以及BALB/cBk-C at小鼠个体之间没有差异;(2)BALB/c小鼠与BALB/cBk-Cat小鼠的DNA指纹在23-6kb之间的区域有差异。     

小麦T型细胞质雄性不育系与相应保持系线粒体DNA的RAPD分析

利用RAPD技术对小麦T型细胞质雄性不育系75-3369A和相应保持系75-336 9B 的线粒体DNA(mtDNA)进行了81个单引物和14组双引物的多态性研究。结果有73个单引物和全部的双引物有扩增结果,表现出多态性的有10个单引物和一组双引物。 Abstract:Using 81 single-primers and 14 double-primers,T-type CMS(cytoplasmic male sterile)line 75-3369 A and is maintainer 75-3369B were studied by means of RAPD.73 single-primers and all double-primers gave amplified products in the experiment,among them 10 single-primers and one double-primer presented polymorphism.     

面向药物发现和精准医疗的基因表达谱分析

作为功能基因组学中重要的组成部分,基因表达谱在生物学、医学和药物研发等多个领域发挥着重要作用.特别是随着精准医疗概念的提出,整合多组学数据用于个性化医疗是未来的发展趋势.本文从基因表达谱的基本概念出发,重点介绍面向药物发现的基因表达谱分析方法,即基于关联图谱的方法、基于基因调控网络的方法和基于多组学数据整合的方法.系统整理了各种方法的研究进展,特别是在抗癌药物研发领域的最新进展,为利用基因表达谱数据进行药物研发提供方法借鉴.