New species of the genera Dryophthorus Germ. and Stenommatus Woll. (Coleoptera: Dryophthoridae) in Dominican amber

A new species of Dryophthorus and two new species of Stenommatus (Coleoptera: Dryophthoridae) are described from Dominican amber. Dryophthorus microtremus n. sp. is characterised by monochrome dorsal scales, nearly parallel sides of the pronotum, wide elytral intervals and the elytral apex only slightly narrowed. Stenommatus tanyrhinus n. sp. is characterised by an elongate rostrum 4.5 times as long as wide in the middle. S. leptorhinus is characterised by small body size, a thin rostrum 3.0 times as long as wide in the middle, wide striae and a narrow prosternal process. This brings the total number of species of Dryophthorini in Dominican amber to five, which is more than half the number of extant species.http://www.zoobank.org/urn:lsid:zoobank.org:pub:4329D0DA-57BD-4CEA-9464-ABD5D1577FC9     

Comparison of Complex DNA Mixtures with Generic Oligonucleotide Microchips

Abstract

The reproducibility of melting curves for repeated hybridizations of target DNA with generic oligonucleotide microchips is shown experimentally to depend on the character of matching between fragments of target DNA and immobilized oligonucleotides. The reproducibility of melting curves is higher for the perfect match duplexes and decreases as the number of mismatched pairs within duplexes increases. This effect was applied to the comparative analysis of complex DNA mixtures. We developed a scheme in which we can identify and discriminate between the probe oligonucleotides responsible for the distinctions between target DNA mixtures. A scheme is illustrated by comparing DNA mixtures corresponding to VD-J genes connected with populations of mRNAs CDR3 TCR Vb (T-cell receptor beta complementarity determining region 3) from the thymus and pancreas of NOD mice. Our results demonstrate that generic microchips can be applied efficiently to the analysis of DNA mixtures.     

Elastic properties of the growth-controlling outer cell walls of maize coleoptile epidermis

The effects of tensile stress and temperature on cell wall elasticity have been investigated in the outer cell walls of coleoptile epidermis of 4- and 6-day-old Zea mays L. seedlings. The change in tensile stress from 6 to 40 MPa caused the increase in cell wall elastic modulus from 0.4 to 3 GPa. Lowering the temperature from 30 to 4 °C resulted in instantaneous and reversible cell wall elongation of 0.3–0.5 ‰. At a given temperature and stress level, the wall elastic modulus of 6-day-old seedlings tended to be 30 % higher than that of 4-day-old plants. The relationship between cell wall elasticity and mechanical stress indicated that the stress distribution within the cell wall is highly uneven. The analysis of the effect of temperature on cell wall elastic strain showed that structural differences between crystalline and amorphous load-bearing polymers were not the only cause of the uneven stress distribution. Based on the results obtained by Hejnowicz and Borowska-Wykr?t (Planta 220:465–473, 2005), we suggested that the uneven stress distribution is partially related to the stress gradient between inner and outer layers of the cell wall.     

Low-Molecular-Weight DNA Replication Intermediates in Escherichia coli: Mechanism of Formation and Strand Specificity

Chromosomal DNA replication intermediates, revealed in ligase-deficient conditions in vivo, are of low molecular weight (LMW) independently of the organism, suggesting discontinuous replication of both the leading and the lagging DNA strands. Yet, in vitro experiments with purified enzymes replicating sigma-structured substrates show continuous synthesis of the leading DNA strand in complete absence of ligase, supporting the textbook model of semi-discontinuous DNA replication. The discrepancy between the in vivo and in vitro results is rationalized by proposing that various excision repair events nick continuously synthesized leading strands after synthesis, producing the observed LMW intermediates. Here, we show that, in an Escherichia coli ligase-deficient strain with all known excision repair pathways inactivated, new DNA is still synthesized discontinuously. Furthermore, hybridization to strand-specific targets demonstrates that the LMW replication intermediates come from both the lagging and the leading strands. These results support the model of discontinuous leading strand synthesis in E. coli.     

Determination of an Angiotensin II-regulated Proteome in Primary Human Kidney Cells by Stable Isotope Labeling of Amino Acids in Cell Culture (SILAC)

Angiotensin II (AngII), the major effector of the renin-angiotensin system, mediates kidney disease progression by signaling through the AT-1 receptor (AT-1R), but there are no specific measures of renal AngII activity. Accordingly, we sought to define an AngII-regulated proteome in primary human proximal tubular cells (PTEC) to identify potential AngII activity markers in the kidney. We utilized stable isotope labeling with amino acids (SILAC) in PTECs to compare proteomes of AngII-treated and control cells. Of the 4618 quantified proteins, 83 were differentially regulated. SILAC ratios for 18 candidates were confirmed by a different mass spectrometry technique called selected reaction monitoring. Both SILAC and selected reaction monitoring revealed heme oxygenase-1 (HO-1) as the most significantly up-regulated protein in response to AngII stimulation. AngII-dependent regulation of the HO-1 gene and protein was further verified in PTECs. To extend these in vitro observations, we overlaid a network of significantly enriched gene ontology terms from our AngII-regulated proteins with a dataset of differentially expressed kidney genes from AngII-treated wild type mice and AT-1R knock-out mice. Five gene ontology terms were enriched in both datasets and included HO-1. Furthermore, HO-1 kidney expression and urinary excretion were reduced in AngII-treated mice with PTEC-specific AT-1R deletion compared with AngII-treated wild-type mice, thus confirming AT-1R-mediated regulation of HO-1. Our in vitro approach identified novel molecular markers of AngII activity, and the animal studies demonstrated that these markers are relevant in vivo. These interesting proteins hold promise as specific markers of renal AngII activity in patients and in experimental models.     

Sustained Protein Kinase D Activation Mediates Respiratory Syncytial Virus-Induced Airway Barrier Disruption

Understanding the regulation of airway epithelial barrier function is a new frontier in asthma and respiratory viral infections. Despite recent progress, little is known about how respiratory syncytial virus (RSV) acts at mucosal sites, and very little is known about its ability to influence airway epithelial barrier function. Here, we studied the effect of RSV infection on the airway epithelial barrier using model epithelia. 16HBE14o- bronchial epithelial cells were grown on Transwell inserts and infected with RSV strain A2. We analyzed (i) epithelial apical junction complex (AJC) function, measuring transepithelial electrical resistance (TEER) and permeability to fluorescein isothiocyanate (FITC)-conjugated dextran, and (ii) AJC structure using immunofluorescent staining. Cells were pretreated or not with protein kinase D (PKD) inhibitors. UV-irradiated RSV served as a negative control. RSV infection led to a significant reduction in TEER and increase in permeability. Additionally it caused disruption of the AJC and remodeling of the apical actin cytoskeleton. Pretreatment with two structurally unrelated PKD inhibitors markedly attenuated RSV-induced effects. RSV induced phosphorylation of the actin binding protein cortactin in a PKD-dependent manner. UV-inactivated RSV had no effect on AJC function or structure. Our results suggest that RSV-induced airway epithelial barrier disruption involves PKD-dependent actin cytoskeletal remodeling, possibly dependent on cortactin activation. Defining the mechanisms by which RSV disrupts epithelial structure and function should enhance our understanding of the association between respiratory viral infections, airway inflammation, and allergen sensitization. Impaired barrier function may open a potential new therapeutic target for RSV-mediated lung diseases.     

Two new species of the genus Rhynchitobius Sharp, 1889 (Coleoptera: Rhynchitidae) in Dominican amber

New species of rhynchitid weevils, Rhynchitobius tanyrhinus n. sp. and R. xuthocolus n. sp. (Coleoptera: Rhynchitidae) in the tribe Auletini are described from Dominican amber. The former species is characterized by a long rostrum, narrow pronotum and elytra, rugose elytral intervals and distinct elytral striae. The latter species has a short rostrum, wide antennal club, yellow legs, non-rugose elytral intervals and weak elytral striae. The present study describes the first representatives of the family Rhynchitidae from Dominican amber.     

Structure-based design of novel dihydroisoquinoline BACE-1 inhibitors that do not engage the catalytic aspartates

The structure–activity relationship of a series of dihydroisoquinoline BACE-1 inhibitors is described. Application of structure-based design to screening hit 1 yielded sub-micromolar inhibitors. Replacement of the carboxylic acid of 1 was guided by X-ray crystallography, which allowed the replacement of a key water-mediated hydrogen bond. This work culminated in compounds such as 31, which possess good BACE-1 potency, excellent permeability and a low P-gp efflux ratio.