Comparison of the somatic TADs and lampbrush chromomere-loop complexes in transcriptionally active prophase I oocytes

Chromosoma - In diplotene oocyte nuclei of all vertebrate species, except mammals, chromosomes lack interchromosomal contacts and chromatin is linearly compartmentalized into distinct...     

Repair of double-strand breaks in plasmid DNA in the yeast Saccharomyces cerevisiae

Summary We studied the repair of double-strand breaks (DSB) in plasmid DNA introduced into haploid cells of the yeast Saccharomyces cerevisiae. The efficiency of repair was estimated from the frequency of transformation of the cells by an autonomously replicated linearized plasmid. The frequency of lithium transformation of Rad⁺ cells was increased greatly (by 1 order of magnitude and more) compared with that for circular DNA if the plasmid was initially linearized at the XhoI site within the LYS2 gene. This effect is due to recombinational repair of the plasmid DNA. Mutations rad52, rad53, rad54 and rad57 suppress the repair of DSB in plasmid DNA. The kinetics of DSB repair in plasmid DNA are biphasic: the first phase is completed within 1 h and the second within 14–18 h of incubating cells on selective medium.     

Growth-promoting effect of carbon material upon bacterial cells propagating through a distance

Carbon material such as graphite and activated charcoal, but not diamond, causes the promotion of growth of certain bacteria under ordinarily non-permissive stress conditions over a distance of several centimeters. Bacillus carboniphilus under the stress of a high KCl concentration and high temperature responded to this remote effect of carbon material with enhanced growth, and thermophile bacterium Bacillus stearothermophilus responded similarly yet moderately under the stress of low temperature. The remote effect of carbon was caused by its activation with external energy, probably of electromagnetic nature, as this effect was markedly decreased by sheltering the experimental system with an iron or aluminum barrier. Carbon material probably transforms the external oscillatory pulses or radiation into a signal exerting, far-reaching, growth-promoting effect upon cells. The most plausible candidate of signals emitted from carbon was considered to be (ultra)sonic.     

The role of environmental factors for the composition of microbial communities of saline lakes in the Novosibirsk region (Russia)

Background

Nothing is currently known about microbial composition of saline lakes of the Novosibirsk region and its dependence on physical-chemical parameters of waters. We studied the structure of microbial communities of saline lakes of the Novosibirsk region and the effect of physical-chemical parameters of waters on microbial communities of these lakes.

Results

According to the ion content, the lakes were classified either as chloride or chloride-sulfate types. Water salinity ranges from 4.3 to 290 g L⁻¹. Many diverse microbial communities were found. Filamentous and colonial Cyanobacteria of the genera Scytonema, Aphanocapsa, and/or filamentous Algae dominated in littoral communities. Spatial and temporal organization of planktonic microbial communities and the quantities of Archaea and Bacteria were investigated using fluorescent in situ hybridization. We have found that the dominant planktonic component is represented by Archaea, or, less frequently, by Bacteria. Various phylogenetic groups (Bacteria, Archaea, Algae, and Cyanobacteria) are nonuniformly distributed. The principal component analysis was used to detect environmental factors that affect microorganism abundance. We found the principal components responsible for 71.1 % of the observed variation. It was demonstrated that two-block partial least squares was a better method than principal component analysis for analysis of the data. We observed general relationships between microbial abundance and water salinity.

Conclusions

We have performed the first-ever study of the structure of the microbial communities of eleven saline lakes in the Novosibirsk region along with their physical-chemical parameters of waters. Our study demonstrates that saline lakes in the Novosibirsk region contain a unique microbial communities that may become a prolific source of microorganisms for fundamental and applied studies in various fields of ecology, microbiology, geochemistry, and biotechnology, and deserve further metagenomic investigation.

     

The 2008 Anatomy Ceremony: Voices, Letter, Poems

Yale University medical and PA students express their gratitude in a compilation of reflections on learning human anatomy.     

In vitro selection of mung bean and tomato for improving tolerance to NaCl

Mung bean and tomato were in vitro selected from cotyledons on MS medium for improved tolerance to NaCl. The growth responses; the Na, K, proline and anthocyanin contents; and activities of phenylalanine ammonia lyase (PAL, EC 4.3.1.5), tyrosine ammonia lyase (TAL, EC 4.3.1) and chalcone isomerase (CI, EC 5.5.1.5) of the selected plants were characterised and compared with those of the original plants in relation to treatment with NaCl. The treatments significantly reduced fresh and dry weights of shoots and roots; the reduction was least pronounced in selected plants. Meanwhile, Na content was significantly increased; however, K was decreased, a trend that was obvious in original plants but withdrawn following in vitro selection with a consequent lowering in Na/K ratio. In addition, proline was greatly induced by NaCl; the induction was most pronounced in selected plants. Moreover, NaCl significantly increased anthocyanin and activities of PAL, TAL and CI in shoots and roots of both species; the increase was lesser in the selected than in the original plants. These findings indicated that selection of mung bean and tomato resulted in a recovery of growth, overproduction of proline and K and withdrawal of Na and secondary metabolism parameters relative to original plants pointing out to an improved tolerance to NaCl following in vitro selection.     

Effects of the aphid Rhopalosiphum padi on the leafhopper Psammotettix alienus under laboratory conditions

The Japanese giant looper, Ascotis selenaria cretacea, is a serious defoliator of tea gardens in Japan. The females produce racemic (Z,Z)-6,9-cis-3,4-epoxynonadecadiene (epo3,Z6,Z9-19:H, main component) and (Z,Z,Z)-3,6,9-nonadecatriene (Z3,Z6,Z9-19:H, minor component). The orientation of the males to the synthetic pheromone placed in a trap was strongly disrupted by Z3,Z6,Z9-19:H or a mixture of its monoepoxy derivatives (epoxydiene mixture, EDM) impregnated in septa and placed around the trap. Based on this result, polyethylene tubes containing Z3,Z6,Z9-19:H or EDM were prepared and effect of these dispensers was examined in a field. Disruption of male orientation to synthetic pheromone traps was achieved in orchards permeated with Z3,Z6,Z9-19:H at dispenser density of 3000 and 5000 tubes ha^–1 (release rate: 0.55–0.61 mg day^–1 tube^–1) and with EDM at every tested dose, 250–5000 tubes ha^–1 (release rate: 0.25–0.39 mg day^–1 tube^–1). Furthermore, disruption of mating in tethered females was observed in these orchards; particularly, the mating was perfectly inhibited in the areas treated with EDM at 3000 and 5000 tubes ha^–1. This is the first formulation for the mating disruption of a geometrid pest.     

Investigation of the Antioxidant Properties of the Quaternized Chitosan Modified with a Gallic Acid Residue Using Peroxidase that Produces Reactive Oxygen Species

Biochemistry (Moscow) - Chitosan modified with a (2-hydroxy-3-trimethylammonium) propyl group and gallic acid residue, or quaternized chitosan with gallic acid (QCG), was synthesized. Antioxidant...