Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

Supportive breeding and stocking performed with non‐native or domesticated fish to support sport fishery industry is a common practice throughout the world. Such practices are likely to modify the genetic integrity of natural populations depending on the extent of genetic differences between domesticated and wild fish and on the intensity of stocking. The purpose of this study is to assess the effects of variable stocking intensities on patterns of genetic diversity and population differentiation among nearly 2000 brook charr (Salvelinus fontinalis) from 24 lakes located in two wildlife reserves in Québec, Canada. Our results indicated that the level of genetic diversity was increased in more intensively stocked lakes, mainly due to the introduction of new alleles of domestic origin. As a consequence, the population genetic structure was strongly homogenized by intense stocking. Heavily stocked lakes presented higher admixture levels and lower levels of among lakes genetic differentiation than moderately and un‐stocked lakes. Moreover, the number of stocking events explained the observed pattern of population genetic structure as much as hydrographical connections among lakes in each reserve. We discuss the implications for the conservation of exploited fish populations and the management of stocking practices.     

In defence of model‐based inference in phylogeography

Recent papers have promoted the view that model‐based methods in general, and those based on Approximate Bayesian Computation (ABC) in particular, are flawed in a number of ways, and are therefore inappropriate for the analysis of phylogeographic data. These papers further argue that Nested Clade Phylogeographic Analysis (NCPA) offers the best approach in statistical phylogeography. In order to remove the confusion and misconceptions introduced by these papers, we justify and explain the reasoning behind model‐based inference. We argue that ABC is a statistically valid approach, alongside other computational statistical techniques that have been successfully used to infer parameters and compare models in population genetics. We also examine the NCPA method and highlight numerous deficiencies, either when used with single or multiple loci. We further show that the ages of clades are carelessly used to infer ages of demographic events, that these ages are estimated under a simple model of panmixia and population stationarity but are then used under different and unspecified models to test hypotheses, a usage the invalidates these testing procedures. We conclude by encouraging researchers to study and use model‐based inference in population genetics.     

Cloning and Characterization of New Repetitive Sequences in Field Bean (Vicia fabaL.)

Five new repetitive sequences have been isolated from theViciafabagenome, by cloning bands visible on agarose gel electrophoresisafter digestion of genomic DNA with various restriction enzymes.The sequences were 109 to 584 bp long, their abundance rangingfrom 5x10⁴to 5x10⁵copies per haploid genome. Southern blot andinsituhybridization revealed that four of five newly isolatedrepeats were dispersed in theV. fabagenome. One of the repeats(TIII15) showed tandem organization with several major hybridizationspots on mitotic chromosomesin situ.These sites were distributedin euchromatic as well as in heterochromatic chromosomal regions,and in several loci they were simultaneously localized withpreviously describedFokI repeated elements. The sequence ofTIII15 comprises four 26–27 bp subrepeats, but sharesno homology toFokI elements which have similar sequence organization.All newly described sequences were highly specific forV. faba,withlittle or no hybridization to DNA of otherViciaspecies, andno hybridization to DNA of other legumes tested.Copyright 1999Annals of Botany Company Vicia faba, field bean, repeated DNA sequences, FISH, PRINS, genome organization, copy number.     

Late Cretaceous follicular fruits from southern Sweden with systematic affinities to early diverging eudicots

Eight new species in seven new genera of follicular fruits are described from the Late Cretaceous of southern Sweden. They are Agapitocarpus emisxus , Chontrocarpus pachytoichus , Maiandrocarpus moirasmenus , Malliocarpus batrachoides , Mitocarpus elegans , Xylocarpus rhitidoides , Zeugarocarpus adroagathus and Z. leptoagathus . The fossil follicles are borne along infructescence axes or more commonly occur as isolated, dispersed fruits. Three genera, Maiandrocarpus , Mitocarpus and Zeugarocarpus , have follicles in distinct pairs borne spirally on an infructescence axis. Each follicle of a pair faces the axis with its ventral slit, which strongly indicates that the paired follicles were derived from two separate, monocarpellate flowers rather than from a single, bicarpellate flower. One genus ( Malliocarpus ) has follicles borne individually in the infructescence and three others ( Agapitocarpus , Chontrocarpus and Xylocarpus ) are known only as dispersed follicles. The paired follicles share many features with most of the dispersed follicles, including a sessile stigmatic area, a three-layered simple follicle wall, a simple vascular system composed of one dorsal and two lateral bundles, as well as a marginal-linear placentation bearing several anatropous ovules. Accordingly they are thought to belong to the same complex of taxa. The general structure of the fossils and comparison with modern angiosperms suggest that the fossils might represent an extinct lineage within or close to basal eudicots and many characters are shared with members of extant Proteaceae.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 377–407.     

Characterization and PCR multiplexing of polymorphic microsatellite loci for the locust Locusta migratoria

Because of the scarcity of polymorphic genetic markers available in locust species, only a few population genetics studies have been carried out on this taxon. We isolated and characterized 11 polymorphic microsatellite loci in the pest locust Locusta migratoria capito, and described experimental conditions for polymerase chain reaction (PCR) multiplexing and simultaneously genotyping these loci. The number of alleles per locus ranged from six to 25, and the expected heterozygosity ranged from 0.431 to 0.957. Results of cross‐taxon amplification tests are reported in six other Locusta migratoria subspecies, six species of the Oedipodinae subfamily and two other pest locust species.     

Characterization of seven polymorphic microsatellites for the study of two Ranunculaceae: Ranunculus nodiflorus L., a rare endangered species and Ranunculus flammula L., a common closely related species

Ranunculus nodiflorus and Ranunculus flammula are two closely related Ranunculaceae. In France, the first one is rare and endangered, whereas the second is common. To compare their population genetic structure, seven polymorphic microsatellite markers were characterized. We found no polymorphism in R. nodiflorus, whereas R. flammula was polymorphic at each locus. The total number of alleles per locus varied from three to eight. Observed heterozygosities ranged from 0 to 0.261. This set of microsatellites offers an efficient tool to study population genetic structure and to compare the results between closely related endangered and common species.     

Ten polymorphic microsatellite markers in the wandering albatross Diomedea exulans

We describe 10 new variable dinucleotide microsatellites in the wandering albatross Diomedea exulans, as well as conditions for multiplexing and simultaneous genotyping sets of loci. Their variability was assessed in two and one populations from the Crozet and Kerguelen archipelagos (southern Indian Ocean), respectively. Two to 13 alleles were detected per population, and the mean gene diversity was around 0.4. The low genetic differentiation suggests that these populations constitute a single panmictic unit. Cross‐species amplification provided some variability at three and five loci in two other marine birds (Bulweria bulwerii and Pagodroma nivea), but none in Calonectris diomedea.     

How internal waves influence the vertical distribution of zooplankton

1. We present data with a high spatio‐temporal resolution from a 72‐h field survey in Bautzen Reservoir (Saxony, Germany). The aims of this survey were to observe hydrophysical processes during a period of unstable stratification in spring and investigate the effect of wind‐induced internal waves on the vertical distribution of zooplankton. 2. Wind velocities up to 10 m s⁻¹ caused a strong downwelling event of warm water at the sampling site and led to the generation of internal waves with an amplitude of 4 m. 3. The zooplankton community, which was dominated by Daphnia galeata, inhabited epilimnetic waters. Downwelling enlarged the thickness of the epilimnetic layer and, hence, led to high zooplankton abundances down to relatively deep water strata indicating lateral transport of zooplankton. As a consequence, area‐specific zooplankton abundances increased considerably (max. fourfold) during downwelling. 4. We conclude that classical limnological field sampling, such as for monitoring purposes, can lead to severely biased estimates of zooplankton abundance due to the interfering effects of hydrophysical processes like internal waves. 5. Backscattering strengths measured by a simultaneously deployed Acoustic Doppler Current Profiler (600 kHz) were found to be correlated with estimated zooplankton abundances based on plankton samples.     

Phorbol esters as probes of the modulatory site on protein kinase G–an overview

Phorbol esters as probes of the modulatory site on protein kinase C–an overview. The phorbol esters, diterpene derivatives produced by members of the family Euphorbiaceae, are of major scientific importance as tumour promoters. Their primary site of action is protein kinase C, an enzyme involved in the message transduction pathway for a large class of hormones which cause enhanced phosphatidylinositol turnover. Heterogeneity in the response of biological systems to the phorbol esters may be explained in part by heterogeneity in the phospholipids associated with protein kinase C, in its subcellular localization, and by proteolytic processing, as well as by isoforms of the enzyme. Development of other classes of activators of protein kinase C through computer modelling and natural product isolation suggests possible new approaches for intervention in the pathway.