Inter‐specific gene flow dynamics during the Pleistocene‐dated speciation of forest‐dependent mosquitoes in Southeast Asia

Tropical forests have undergone repeated fragmentation and expansion during Pleistocene glacial and interglacial periods, respectively. The effects of this repeated forest fragmentation in driving vicariance in tropical taxa have been well studied. However, relatively little is known about how often this process results in allopatric speciation, since it may be inhibited by recurrent gene flow during repeated secondary contact, or to what extent Pleistocene‐dated speciation results from ecological specialization in the face of gene flow. Here, divergence times and gene flow between three closely‐related mosquito species of the Anopheles dirus species complex endemic to the forests of Southeast Asia, are inferred using coalescent based Bayesian analysis. An Isolation with Migration model is applied to sequences of two mitochondrial and three nuclear genes, and 11 microsatellites. The divergence of An. scanloni has occurred despite unidirectional nuclear gene flow from this species into An. dirus. The inferred asymmetric gene flow may result from the unique evolutionary adaptation of An. scanloni to limestone karst habitat, and therefore the fitness advantage of this species over An. dirus in regions of sympatry. Mitochondrial introgression has led to the complete replacement of An. dirus haplotypes with those of An. baimaii through a recent (～62 kya) selective sweep. Speciation of An. baimaii and An. dirus is inferred to have involved allopatric divergence throughout much of the Pleistocene. Secondary contact and bidirectional gene flow has occurred only within the last 100 000 years, by which time the process of allopatric speciation seems to have been largely completed.     

Does constrained oviposition influence offspring sex ratio in the solitary parasitoid wasp Venturia canescens?

Abstract.  1. In haplodiploid organisms, virgin or sperm-depleted females can reproduce but are constrained to produce only male progeny. According to Godfray's constrained model, when p , the proportion of females constrained to produce only male progeny, is not null in a panmictic population, unconstrained females should bias their sex allocation towards females to compensate for the excess of males. These unconstrained females should be able to adjust the sex ratio in response to local variation of p .
2. In this paper an experimental approach is used to test the hypotheses of this model in the solitary endoparasitoid Venturia canescens under both field and laboratory conditions. Specifically, it is tested whether unconstrained females use their encounters with conspecifics (either male or female) to estimate p and then adjust their sex ratio accordingly.
3. As assumed by Godfray's model, constrained females actively search for host patches in the field and under laboratory conditions produce the same number of offspring during their lifetime as unconstrained females. As predicted by the model, unconstrained females produce a sex ratio biased towards females both in the laboratory and in the field.
4. The results show that this bias is not a response to encounters with conspecifics previous to oviposition. The hypothesis that the bias is due to differential mortality between sexes during ontogeny is also rejected. The proportions of constrained ovipositions estimated in two natural populations explain only a small fraction of the sex ratio bias observed in V. canescens.     

Identification of virulence genes in Fusarium oxysporum f. sp. lycopersici by large-scale transposon tagging

Forward genetic screens are efficient tools for the dissection of complex biological processes, such as fungal pathogenicity. A transposon tagging system was developed in the vascular wilt fungus Fusarium oxysporum f. sp. lycopersici by inserting the novel modified impala element imp160::gfp upstream of the Aspergillus nidulans niaD gene, followed by transactivation with a constitutively expressed transposase. A collection of 2072 Nia⁺ revertants was obtained from reporter strain T12 and screened for alterations in virulence, using a rapid assay for invasive growth on apple slices. Seven strains exhibited reduced virulence on both apple slices and intact tomato plants. Five of these were true revertants showing the re-insertion of imp160::gfp within or upstream of predicted coding regions, whereas the other two showed either excision without re-insertion or no excision. Linkage between imp160::gfp insertion and virulence phenotype was determined in four transposon-tagged loci using targeted deletion in the wild-type strain. Knockout mutants in one of the genes, FOXG_00016 , displayed significantly reduced virulence, and complementation of the original revertant with the wild-type FOXG_00016 allele fully restored virulence. FOXG_00016 has homology to the velvet gene family of A. nidulans . The high rate of untagged virulence mutations in the T12 reporter strain appears to be associated with increased genetic instability, possibly as a result of the transactivation of endogenous transposable elements by the constitutively expressed transposase.     

Phylogenetic relationships of Combretaceae inferred from nuclear and plastid DNA sequence data: implications for generic classification

The putative complexity of Combretaceae and lack of information on phylogenetic relationships within the family led us to explore relationships between genera of Combretaceae by means of combined analyses of plastid and nuclear sequences. We collected DNA sequence data from the nuclear ribosomal internal transcribed spacer region and plastid rbcL, psaA‐ycf3 spacer and psbA‐trnH spacer for 14 of the 17 genera of Combretaceae. The current classification of the family into two subfamilies, Strephonematoideae and Combretoideae, is corroborated. Within Combretoideae, division into two tribes, Laguncularieae and Combreteae, is strongly supported. Within Combreteae subtribe Terminaliinae, relationships between genera are largely unresolved. Terminalia is not supported as monophyletic and two groups were identified, one containing mainly African species and another of mostly Asian species. Pteleopsis, Buchenavia and Anogeissus are embedded within Terminalia, and we suggest that all genera of Terminaliinae, with the exception of Conocarpus, should be included in an expanded circumscrition of Terminalia. Within subtribe Combretinae, a clade formed by the two monotypic genera Guiera and Calycopteris is sister to the rest of the subtribe. Groupings in Combretinae are consistent with recent results based on morphological data. Combretum is currently divided into three subgenera: Apethalanthum, Cacoucia and Combretum. The last two were included in this study and supported as monophyletic if Quisqualis is included within subgenus Cacoucia. Meiostemon is sister to subgenus Combretum. We recommend that subgenus Combretum should be expanded to include Meiostemon and subgenus Cacoucia to include Quisqualis. The sectional classification within Combretum proposed in earlier morphological studies is confirmed except for the exclusion of C. imberbe from section Hypocrateropsis in a separate and monotypic section and the inclusion of C. zeyheri (section Spathulipetala) in section Macrostigmatea. In order to accommodate C. imberbe, a new section is suggested. The reinstatement of previously recognized sections Grandiflora and Trichopetala, both of which had been sunk into subgenus Cacoucia section Poivrea, is proposed. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2010, 162 , 453–476.     

Classifying the fire‐response traits of plants: How reliable are species‐level classifications?

Plant species in fire‐prone environments possess specific traits which allow them to survive fire. Species are commonly classified according to whether they survive fire and resprout or whether they are killed by fire and regenerate from seed. However, different populations of the same species have been shown to vary in their responses. Therefore, the classification of a species into a single category based on fire‐response traits may not necessarily be representative of every population under every circumstance. This study examined the extent of within‐species variation in fire‐response traits of woody plants in south‐eastern Australia after the 2003 fires. Species were then classified using two approaches: (i) using data from a field survey of fire‐response traits, taking into account within‐species variation; and (ii) using species' fire responses listed in a pre‐existing fire‐response database compiled from a variety of primary sources. Field data showed that the majority of species in the study area resprouted after fire with around one in 10 species variable in their resprouting response. Almost half of all species varied from site to site according to whether they regenerated from seed, either solely or in addition to resprouting. The numbers of species classified as resprouters and seed regenerators varied according to the classification method used. Differences were also found between the classification method when calculating the mean proportion of resprouters and seed regenerators across sites. The fire‐response traits for some species from the database were found to differ from the observed field responses. This study demonstrated that the application of a fire‐response trait, reported in a trait database, to an entire species, may not adequately represent the actual fire responses of the populations of interest. Rather than considering the fire‐response traits of a species, accurate prediction may be better achieved by considering how different populations of plants will respond to fire.     

Carbon isotopic abundances in Mesozoic and Cenozoic fossil plants: Palaeoecological implications

Carbon isotopic abundances have been measured for more than one hundred samples of fossil plants ranging in age from middle Triassic to late Tertiary. Most of the plant fossils were identified at the specific or generic level and were selected as representing a variety of continental environments, including xeric and humid habitats. Material analysed included numerous fragments of flowers, seeds, fruits, leaves and wood, as well as a single amorphous lignite sample. The analyses performed for the plant fragments indicate relatively constant isotopic compositions during this time interval, with plant δ¹³C values ranging between -28 and -20%. These values are within the range for living terrestrial plants with C₃, photosynthesis, although values more positive than -23% are rare in C₃ plants and typically found in plants growing under environmental stress. Lower δ¹³C values might have been expected owing to the much higher CO₂, levels of the Cretaceous atmosphere that have been inferred from marine carbonates. No fossils with values indicating C₄, photosynthesis were discovered. Fossil plants from inferred mesic environments showed δ¹³C values ranging between -26.7 and -24.1%. Highest δ¹³C values in angiosperms (up to -20.1%) were measured for Late Cretaceous combretaceous flowers from Portugal. Some cheirolepidiaceous conifers from the Early Cretaceous also showed high δ¹³C values. Values measured for Pseudofrenelopsis varians and Glenrosa taxensis were -21.9%, and values of gymnosperm wood, probably of cheirolepidiaceous affinity, were -19.0%. These high values are in accordance with inferred ecological conditions for the fossil plants. They may suggest a tendency for C₄,-like photosynthesis, although the data are equivocal. Higher values (-17.3%) clearly falling outside the C₃, range were, however, obtained from a single lignite fragment of Late Cretaceous (Maastrichtian) age. The nature of this plant fragment is unknown, but the result suggests that C₄-like photosynthesis was present at least in some latest Cretaceous vegetation. A hadrosaurian dinosaur with well-preserved collagen-like organic matter from the same deposit showed δ¹³C values around-16%, which also suggests the presence of CAM or even C₄ plants in the latest Cretaceous. □Carbon isotopic abundances, δ¹³C values, dinosaurs, plants, photosynthetic pathways, Mesozoic.     

Effects of landscape features and demographic history on the genetic structure of Testudo marginata populations in the southern Peloponnese and Sardinia

Testudo marginata, the largest European land tortoise, is suffering habitat degradation and destruction. Some populations, in markedly degraded habitats, are characterized by divergent morphotypes. However, the evolutionary significance of these morphotypes is of debate. Using 11 polymorphic microsatellites, we studied: (1) marginated tortoises from Sardinia that display a divergent morphotype – this population was potentially introduced from Greece; and (2) an area in the southern Peloponnese that includes a small and degraded zone in which marginated tortoises are dwarf. Genetic analyses run without any a priori assignment clearly acknowledge the specimens sampled in the territory of the dwarf form as a single group whilst Sardinian specimens are clustered with other specimens from the northern part of the area sampled in Greece. Demographic analyses suggest that Sardinian tortoises originated recently from some of the populations sampled in the northern part of the area sampled in Greece. Over locations sampled in Greece, a landscape‐genetic analysis allowed us to detect potential landscape features that may reduce gene flow between the dwarf form territory and surrounding areas. Our results suggest that the territory of the dwarf form is particularly propitious for marginated tortoises and that conservation regulations in Greece should be reinforced to protect this area from increasing impact of human activities changing from traditional agriculture to mechanization and extensive use of chemicals. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 591–606.     

The visual perception of relative distances in the wood-cricket, Nemobius sylvestris

ABSTRACT. In post-embryonic development, the visual system of the cricket Nemobius sylvestris (Bosc) shows a regular increase in the length and number of the ommatidia and a decrease of inter-ommatidial angle so that the adult's is a third of the value in the first larval instar. Further, a 20° widening of the binocular visual field, in the horizontal plane at least, and a three-fold increase of the inter-ocular distance improve the potential for binocular vision. Behavioural experiments showed that the insect orientates with differing precision depending on the distances to targets of constant angular size. Further, in a choice situation between two such vertical targets, the cricket orientates most strongly towards the closer of the two, even at target distances of 52 and 130 cm from its point of decision. In fixed tethered animals, discrimination between a close and a distant target is still possible, but disappears when the head is waxed to the thorax, so that any relative movement between the animal and the object is prevented. As these capabilities exceed the possibilities of binocular triangulation, the possible role of other mechanisms is discussed, particularly that involving movement parallax using both eyes.     

Experimental climate effect on seasonal variability of polyphenol/phenoloxidase interplay along a narrow fen–bog ecological gradient in Sphagnum fallax

Extracellular phenoloxidase enzymes play an important role in the stability of soil carbon storage by contributing to the cycling of complex recalcitrant phenolic compounds. Climate warming could affect peatland functioning through an alteration of polyphenol/phenoloxidase interplay, which could lead them to becoming weaker sinks of carbon. Here, we assessed the seasonal variability of total phenolics and phenoloxidases subjected to 2–3 °C increase in air temperature using open‐top chambers. The measurements were performed along a narrow fen–bog ecological gradient over one growing season. Climate warming had a weak effect on phenoloxidases, but reduced phenolics in both fen and bog areas. Multivariate analyses revealed a split between the areas and also showed that climate warming exacerbated the seasonal variability of polyphenols, culminating in a destabilization of the carbon cycle. A negative relationship between polyphenols and phenoloxidases was recorded in controls and climate treatments suggesting an inhibitory effect of phenolics on phenoloxidases. Any significant decrease of phenolics through repeatedly elevated temperature would greatly impact the ecosystem functioning and carbon cycle through an alteration of the interaction of polyphenols with microbial communities and the production of extracellular enzymes. Our climate treatments did not have the same impact along the fen–bog gradient and suggested that not all the peatland habitats would respond similarly to climate forcing.