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1.
健康儿童与发育不佳儿童肠道菌群结构的比较研究 总被引:4,自引:0,他引:4
目的对健康儿童与发育不佳(FTT)儿童肠道中微生物区系的ERIC-PCR指纹图谱异同进行研究。方法根据美国疾病预防控制中心(CDC)对儿童生长发育的评价指标对某幼儿园200例4~6岁儿童进行评价,筛选出16例健康儿童和13例FTT儿童,每周1次连续3周跟踪取样,提取粪便样品中细菌总DNA,获得其ERIC-PCR指纹图谱,再将其中一个样品的ERIC-PCR产物作为混合探针通过杂交对指纹图谱上DNA条带序列的异同进一步比较。结果同一个体的肠道菌群结构在取样期间稳定性较好;虽然健康儿童间的肠道菌群结构也有一定差异,但它们却有着共同的结构特征;而健康儿童与FTT儿童的肠道菌群结构差异较大。结论儿童发育状况与肠道菌群结构有一定的关系。 相似文献
2.
Orthogonal array design in optimizing ERIC-PCR system for fingerprinting rat's intestinal microflora
AIMS: The aim of the present study was to rapidly optimize enterobacterial repetitive intergenic consensus (ERIC)-PCR amplification systems for fingerprinting rat's intestinal microflora. METHODS AND RESULTS: Orthogonal array design and statistic analysis methods were attempted to rapidly optimize ERIC-PCR reaction system for fingerprinting intestinal microflora. The results showed that variations of the four factors (Mg(2+), dNTP, primer and HotstarTaq polymerase concentrations) changed the fingerprinting patterns significantly. The order of effects of those factors on fingerprinting patterns was primers (F = 274.000, P = 0.000), Hotstar Taq polymerase (F = 197.000, P = 0.001), Mg(2+) (F = 181.000, P = 0.001) and dNTP (F = 27.000, P = 0.011). The optimal ERIC-PCR condition was containing 200 micromol l(-1) dNTP, 2.5 mmol l(-1) Mg(2+), 0.4 micromol l(-1) primer, 1 U HotstarTaq DNA polymerase namely 25 microl reaction system, which is proved to be a simple, fast and reliable method suitable for fingerprinting rat's intestinal microflora. CONCLUSIONS: The results suggest that Mg(2+), dNTP, primer and HotstarTaq polymerase concentrations play important roles on ERIC-PCR fingerprinting patterns. Orthogonal array design is a considerable method to optimize ERIC-PCR reaction system for its rapidness, simplicity, potential to investigate mutual effects of parameters. SIGNIFICANCE AND IMPACT OF THE STUDY: It is the first report on optimization of ERIC-PCR amplification systems for fingerprinting intestinal microflora using orthogonal array design or statistic analysis methods and systematically observing the effects of variables of reaction conditions. 相似文献
3.
目的比较不同方法提取鸡肠道菌群总DNA的差异,为分子方法分析肠道菌群组成提供质量较高的DNA模板。方法采用反复冻融法、酶裂解法和试剂盒法(E.N.Z.A Stool DNA Kit)来提取鸡肠道菌群的总DNA,并根据DNA浓度及纯度、16S DNA扩增产物和ERIC-PCR产物所反映的片段多态性4个指标,对这3种方法提取的DNA质量进行比较。结果3种方法均能提取DNA,所得DNA都可以用于16S DNA的扩增,但后2种方法所得DNA的ERIC-PCR结果能反映出更高的菌群多样性。结论试剂盒法和酶裂解法所提取的DNA质量好,适合用于肠道菌群的分子生态研究。 相似文献
4.
大熊猫和小熊猫粪便DNA提取的简易方法 总被引:29,自引:0,他引:29
采集了大熊猫和小熊猫的新鲜粪便样品 ,使用 1 0 0 %乙醇保存。通过重复离心富集研究动物的肠道脱落细胞 ,并使用乙醇和双蒸水洗涤以除去抑制物。用 1 %的SDS快速裂解细胞 ,离心除去残渣后 ,向裂解液中加入蛋白酶进行消化。消化结束后使用等体积的酚 /氯仿抽提 ,乙醇沉淀DNA。用双蒸水溶解粪便DNA后 ,使用PCR产物纯化试剂盒对粪便DNA进行纯化。电泳检测结果显示 ,从乙醇保存的大、小熊猫粪便样品中抽提到高质量的粪便DNA。对线粒体控制区、细胞色素b基因、 1 2SrRNA基因的PCR扩增反应以及测序结果也证实了样品保存方法和DNA抽提方法可靠而高效。此方法使用实验室内常用的分子生物学试剂 ,不仅克服了分子粪便学研究中常见的抑制物粪便DNA微量降解严重等障碍 ,与商业化的粪便抽提试剂盒 (QIAampDNAStoolMiniKit,Qiagen)相比还是一种经济的试验方法 (抽提反应成本为试剂盒的 1 / 5 )。文中还对粪便DNA内细菌基因组等背景DNA可能对分子粪便学试验结果的影响进行了探讨。在基于PCR技术的遗传学研究中 ,对于植食性动物而言 ,粪便内的背景DNA对目标动物DNA片断的扩增和序列测定未见影响 ;但对于肉食性动物 ,则必须考虑被捕食者基因组对试验可能产生的影响 ,应谨慎对待 相似文献
5.
用SD大鼠检测正常肠道肠球菌、肠杆菌、双歧杆菌、乳酸杆菌和类杆菌的细菌易位的变化,采用多指标测试的实验方法以进行分析。通过上述指标检测,为大鼠有关肠道菌群和细菌易位提供一些参考数据. 相似文献
6.
Wei He Ling Lin Fujun Shen Wenping Zhang Zhihe Zhang Emily King Bisong Yue 《Conservation Genetics》2008,9(6):1541-1546
Genetic variations in the giant panda populations in Wanglang and Baoxing Nature Reserves were evaluated in this study. Panda
feces were collected from these two reserves and DNA samples extracted from the feces were genotyped at 13 microsatellite
loci. A total of 130 alleles were identified from the 13 microsatellite loci in 63 giant pandas, including 35 private alleles
in Wanglang, 53 private alleles in Baoxing, and 42 alleles shared between the two populations. The mean observed heterozygosity,
average number of alleles, average number of allelic richness, and average polymorphism information content were 0.488, 6.2,
3.302, and 0.612, respectively for the Wanglang population and 0.553, 7.6, 4.050, and 0.747 for the Baoxing population. A
moderate degree of genetic differentiation (F
st = 0.26) and no gene flow were found between these two populations.
W. He and L. Lin contributed equally to this work. 相似文献
7.
肠道菌群及内毒素在多器官功能不全综合征时的变化 总被引:1,自引:0,他引:1
目的 探讨肠道菌群及内毒素在多器官功能不全综合征( MODS)时的变化。方法 取SD大鼠,腹腔注射无菌酵母多糖A制备MODS模型,检测大鼠肠道菌群、外周血和门静脉血中的内毒素以及肠道游离内毒素含量,并进行定量分析。结果 模型组大鼠肠道专性厌氧菌的数量明显减少,革兰阴性杆菌和双歧杆菌的比例倒置,内毒素含量明显增加,与对照组比差异有显著性( P<0 .0 5 )。结论 MODS时肠道细菌微生态发生明显改变,肠道内毒素池与肠道革兰阴性杆菌的变化密切相关 相似文献
8.
食物过敏婴儿和健康儿肠道菌群分析 总被引:4,自引:1,他引:4
目的检测食物过敏婴儿与健康婴儿的大便菌群,为食物过敏与肠道菌群关系的研究提供依据。方法以在重庆儿童医院体检的52例食物过敏婴儿和年龄、性别匹配的100例健康婴儿为研究对象,收集所有对象的新鲜粪便,采用直接快速涂片法分析肠道菌群。结果食物过敏婴儿革兰阳性杆菌比例降低,革兰阴性杆菌、革兰阳性球菌比例增高[(71.43±8.70)%vs(78.91±9.25)%,(15.69±6.26)%vs(11.85±6.66)%,(11.67±4.02)%vs(7.60±4.27)%,P均<0.001]。不同喂养方式下,食物过敏婴儿的大便菌群比例显示不同的改变,但革兰阳性杆菌比例降低是其共同的特点(P均<0.05)。结论食物过敏婴儿肠道菌群与健康婴儿的肠道菌群差异存在显著性。不同喂养方式的婴儿显示不同的大便菌群组成。肠道正常菌群的改变可能在食物过敏的发生中起一定作用。 相似文献
9.
目的通过对断奶日龄不同的SD大鼠肠道菌群和肠道形态学指标变化的观察研究,为临床上研究肠道相关性疾病提供参考数据。方法选取断奶日龄为21 d的SD大鼠60只,雌雄各半,分别在断奶后第0、7、14、21、28天测定4种肠道正常菌群及肠道黏膜形态变化。结果SD大鼠断奶后不同时间点,不同肠段内大肠杆菌、双歧杆菌、乳酸杆菌和葡萄球菌呈现不同的变化规律,且断奶后第7天肠道细菌移位率明显提高,同时断奶后不同时间点,大鼠不同肠段黏膜厚度、肌层厚度、绒毛长度和宽度都呈现上升趋势。结论断奶后第7天和14天,SD大鼠肠道菌群和肠道形态学变化明显,且易发生肠道细菌移位。 相似文献
10.
Khanal T Kim HG Hwang YP Kong MJ Kang MJ Yeo HK Kim DH Jeong TC Jeong HG 《Biochemical and biophysical research communications》2011,413(2):318-324
A possible role for metabolism by the human intestinal microflora in arbutin-induced cytotoxicity was investigated using human hepatoma HepG2 cells. When the cytotoxic effects of arbutin and hydroquinone (HQ), a deglycosylated metabolite of arbutin, were compared, HQ was more toxic than arbutin. Incubation of arbutin with a human fecal preparation could produce HQ. Following incubation of arbutin with a human fecal preparation for metabolic activation, the reaction mixture was filter-sterilized to test its toxic effects on HepG2 cells. The mixture induced cytotoxicity in HepG2 cells in a concentration-dependent manner. In addition, the mixture considerably inhibited expression of Bcl-2 together with an increase in Bax expression. Likewise, activation stimulated cleavage of caspase-3 and production of reactive oxygen species in HepG2 cell cultures. Furthermore, induction of apoptosis by the intestinal microflora reaction mixture was confirmed by the terminal deoxynucleotidyltransferase-mediated dUTP-biotin nick-end labeling assay. Taken together, these findings suggest that the human intestinal microflora is capable of metabolizing arbutin to HQ, which can induce apoptosis in mammalian cells. 相似文献