薄罗藓科和羽藓科某些属分类位置的探讨

利用垂直板型聚丙烯酰胺凝胶电泳技术,对羊角藓,短肋羽藓,多疣麻羽藓,皱叶牛舌藓,暗绿多枝藓,多毛藓,薄罗藓,细叶小羽藓、小粗疣藓和狭叶小羽藓１０种植物进行过氧化物酶酯酶酯,酯酶,苹果酸脱氢酶,谷草转氨酶和乳酸脱氢酶分析。结果表明将多枝藓属,牛舌藓属,羊角藓属合并独立成为牛舌藓科是合理的;小羽藓属和麻羽藓属宜归入薄罗藓科。同时表明同工酶技术和数值分类方法可用来澄清某些苔藓植物不同科、属之间的亲缘关系     

丝瓜藓属(Pohlia Hedw.)的系统位置及属内种间关系探讨

丝瓜藓属的系统地位及属内种间关系存在争议。本研究首次利用核糖体DNA内转录间区(ITS)序列数据对丝瓜藓属及相关科属植物进行系统发育分析。最大简约法,最大似然法及贝叶斯推论法构建的系统树均表明,ITS序列数据不支持将丝瓜藓属划归提灯藓科。丝瓜藓属植物与缺齿藓属植物构成一个单系分支。Brotherus(1903),Ochi(1959),Shaw(1984)及Hill等(2006)等学者提出的丝瓜藓属属下分类均不是单系类群。     

福建漳浦中中新世几种藓类植物研究北大核心

亚洲新生代藓类植物化石非常稀少,漳浦琥珀是目前已知的我国低纬度地区唯一含苔藓植物化石的新生代琥珀矿床。漳浦琥珀源自中中新世气候适宜期(~14-17 Ma)的龙脑香树脂,温暖潮湿的热带季雨林气候和广泛分布的龙脑香科植物,为藓类植物的生长、多样性演化和三维立体保存提供了条件。本研究共报道了漳浦县中中新世藓类植物化石3个属种,包括:白发藓属Leucobryum Hampe、牛舌藓属Anomodon Hook.et Taylor和扁枝藓属Homalia(Brid.)B.S.G.。首次利用三维X射线断层扫描技术(Micro-CT)研究了白发藓属化石,发现其与现生种短枝白发藓Leucobryum humillimum Cardot非常相似,因此将其命名为短枝白发藓(相似种)Leucobryum cf.humillimum。此外,当前牛舌藓属Anomodon和扁枝藓属Homalia化石是东亚地区的首例记录。漳浦琥珀中的藓类植物化石揭示了中中新世时期苔藓植物的多样性,丰富了东亚低纬度地区新生代苔藓植物的化石记录。     

应用ITS序列分析新疆濒危植物盐桦的系统发育

目的:依据ITS序列分析新疆濒危植物盐桦的系统发育.方法:运用PCR直接测序法,对珍稀濒危植物盐桦(Betulahalophila)的nrDNA的ITS区(包括ITS-1,5.8SrDNA和ITS-2)进行序列测定,并与GenBank中提取的17种桦木科桦木属植物的ITS区序列进行了组合分析.结果:盐桦的ITS序列和已公布的17种桦木科桦木属植物的ITS区序列差别不大,同源性在99.67%～99.01%之间.采用clustalx软件对盐桦和17种桦木属植物的ITS区序列进行系统发育分析,构建了桦木属植物的ITS分子系统树,18种桦木科桦木属植物形成三个分支,盐桦与Betula alnoides、Betula populifolia、Betula pubescens同为一支.结论:盐桦在桦木科桦木属内有独特的分类地位.     

基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置

在前人对列当科系统发育研究的基础上,追加了肉苁蓉属(Cistanche)的基因序列数据,运用最大简约法、最大似然法和贝叶斯推断方法探讨了其在列当科中的系统位置及列当科中属间关系.基于rps16基因序列及rps16+ ITS联合序列建立了列当科系统发育树,结果显示,肉苁蓉属、列当属(Orobanche)以及草苁蓉属(Boschniakia)聚在同一进化枝内,肉苁蓉属和列当属表现出最近亲缘关系;列当科中的全寄生类群、半寄生类群和非寄生类群分属在3个不同分支中.     

基于ITS与 trn L-F序列探讨槭树科的系统发育

报道了槭树科41种(其中槭属39种)植物的 trn L-F和ITS序列(其中部分种的ITS序列为重新测定),以期通过分子手段对槭树科内部尤其是复杂的槭属的系统发育关系进行重建.以无患子科和七叶树科为外类群,基于对57个种单独的ITS序列(包括从GenBank下载的16种的序列)、41种 trn L-F序列及41种两者序列的联合数据,分别采用最大简约法(Maximum Parsimony Method)和邻接法(Neighbor-Joining Method)对槭树科的系统发育进行了分析.结果显示,整个槭树科为一单系类群;金钱槭位于槭树科的基部;但由于云南金钱槭( Dipteronia dyerana )聚在了槭属内部,认为金钱槭属和槭属均可能是非单系类群;槭属内组间关系的支持率普遍较低,但多数组的组内关系得到了较好的支持.将两个片段结合比单独的ITS或 trn L-F分析能更好地解决槭属内部的系统关系,其中sect.Palmata 和sect.Microcarpa ,sect.Platanoidea 、sect.Lithocarpa 和sect.Macrophylla ,sect.Integrifolia 、sect.Trifoliata 和sect.Pentaphylla ,以及sect.Acer 、sect.Goniocarpa 和sect.Saccharina (sensu Ogata)的组间亲缘关系得到了一定的支持,但对其中部分组的划分可能应做进一步调整.重新评价了徐廷志系统中对sect.Rubra 和sect.Saccharodendron 的处理.     

中国羽藓科植物修订

中国羽藓科植物自19世纪起即有报道,但迄今才进行首次全面校订,现知中国有17属和71种 (包括1亚种)。本文主要就其中7个属：薄羽藓属、牛舌藓属、小羽藓属、麻羽藓属、毛羽藓属、沼羽藓属及锦丝藓属中的一些种属名称作修订和新增补。文内涉及1新种、3新异名(含1属的新异名和2个种的新异名)和1新中文名。     

基于叶绿体rps16基因和核基因ITS片段研究肉苁蓉属系统位置

在前人对列当科系统发育研究的基础上,追加了肉苁蓉属(Cistanche)的基因序列数据,运用最大简约法、最大似然法和贝叶斯推断方法探讨了其在列当科中的系统位置及列当科中属间关系。基于rps16基因序列及rps16+ITS联合序列建立了列当科系统发育树,结果显示,肉苁蓉属、列当属(Orobanche)以及草苁蓉属(Boschniakia)聚在同一进化枝内,肉苁蓉属和列当属表现出最近亲缘关系;列当科中的全寄生类群、半寄生类群和非寄生类群分属在3个不同分支中。     

基于ITS和trnL-F以及rps4基因片段的 粗疣藓属分类学地位研究

选择粗疣藓属及相关属样本作为内群,油藓属样本作为外群,选取核基因ITS片段以及叶绿体基因trnL-F和rps4片段进行PCR扩增、测序,运用贝叶斯推论(BI)、最大似然法(ML)和最大简约法(MP)构建分子系统发育树,以明确粗疣藓属的分类学地位。结果表明:(1)用于分子系统分析的基因序列共有1 744个位点,其中747个位点属于核基因片段,997个位点属于叶绿体基因片段。(2)3种系统发育树拓扑结构基本一致,都显示粗疣藓属与毛锦藓科成员聚成一支,支持粗疣藓属应隶属于毛锦藓科的观点。(3)小粗疣藓和粗疣藓的种间界限模糊。(4)小鼠尾藓属的3个种与棉藓属成员聚成一支,支持将其归入棉藓科的观点。     

基于质体基因组学方法研究广义玄参科的系统发育

该研究利用GenBank数据库已公开发表的玄参科及相关类群的107属129个物种的质体基因组数据对广义玄参科的系统发育关系进行了分析。该文利用蛋白质编码基因构建了矩阵，并采用最大似然法及贝叶斯推断重建系统发育树。基于两种分析方法获得的系统发育树的拓扑结构完全一致且分辨率及支持率较高。在ML树中，总分支数为129个，其中支持率≥70%的分支数目为123个。结果表明：(1)广义玄参科不是一个单系类群，隶属于广义玄参科的51个物种(37属)分散于列当科、泡桐科、美丽桐科、通泉草科、母草科、狭义玄参科和车前科。(2)狭义玄参科为单系类群，除原隶属于广义玄参科的Bontia、Calamphoreus、Diocirea、Eremophila、Glycocystis、Leucophyllum、玄参属和毛蕊花属外，还包括了原隶属于马钱科的醉鱼草属和原隶属于苦槛蓝科的苦槛蓝属。(3)唇形目为一个单系，目下共形成了14个支持率高的单系分支，对应于14个科(其中美丽桐科和胡麻科仅包括一个物种，不包括在内),科间关系得到较好的解决，木犀科为最早分化出来的类群，其余的类群共同组成核心唇形目。在核心唇形目中，类群...     

A revision of Chinese Thuidiaceae (s. l., Musci)

The study on Chinese Thuidiaceae was started in 19th century. However the present paper deals with the first revision of the family in China. There are 17 genera and 71 species in total including one subspecies. In this paper, several nomenclatural problems are treated, mainly involving 7 genera: Leptocladium Broth., Anomodon Hook. et Tayl., Haplocladium ( C. Muell. ) C. Muell., Claopodium (Lesq. et Jam. ) Ren. et Card., Bryonoguchia Iwatsuki et Inoue, Helodium (Sull.)Warnst. and Actinothuidium (Besch.)Broth. One new species, 3 new synonyms, includingone generic synonym and two specific synonyms, and one Chinese new name are reported.     

The monophyly and rapid evolution of Gentiana sect. Chondrophyllae Bunge s.l. (Gentianaceae): evidence from the nucleotide sequences of the internal transcribed spacers of nuclear ribosomal DNA

The nucleotide sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA of 24 representative species of sect. Chondrophyllae s.l. have been determined and analysed phylogenetically, together with some species of other sections of the genus Gentiana. The ITS sequences strongly support the monophyly of the sect. Chondrophyllae s.l. as a whole complex including various different dysploid cytotypes. Species, such as G. boryi and G. pyrenaica , that had been split into distinct genera by some cytotaxonomists have been proven to be closely related. However, the ITS sequences do not provide sufficient information to make a robust estimation of the phylogenetic relationships among the closely related species and dysploid cytotypes of the complex, beyond recognizing their monophyly and rapid evolution.     

A plastid gene phylogeny of the non-photosynthetic parasitic <Emphasis Type="Italic">Orobanche</Emphasis> (Orobanchaceae) and related genera

The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera.     

用叶绿体ndhF和核核糖体ITS序列推断李属(蔷薇科)的系统发育

Sequences of the chloroplast ndhF gene and the nuclear ribosomal ITS regions are employed to reconstruct the phylogeny of Prunus (Rosaceae), and evaluate the classification schemes of this genus. The two data sets are congruent in that the genera Prunus s.l. and Maddenia form a monophyletic group, with Maddenia nested within Prunus. However, the ndhF data set is incongruent with the ITS data supporting two major groups within Prunus one consisting of subgenera Laurocerasus (including Pygeum) and Padus as well as the genus Maddenia and another of subgenera Amygdalus, Cerasus, and Prunus. The ITS data, on the other hand, support a clade composed of subgenera Amygdalus and Prunus and Prunus sect. Microcerasus in addition to a paraphyletic grade of subgenera Laurocerasus and Padus (and the genus Maddenia) taxa. In general, the subgeneric classifications of Prunus s.l. are not supported. The ITS and ndhF phylogenies differ mainly in interspecific relationships and the relative position of the Padus/Laurocerasus group. Both ITS and ndhF data sets suggest that the formerly recognized genus Pygeum is polyphyletic and that the distinction of the subgenera Padus and Laurocerasus is not supported. The biogeographic interactions of the temperate and tropical members in the Padus/Laurocera- sus/Maddenia alliance including Pygeum are shown to be highly dynamic and complex.     

对翼蓼(蓼科)属级位置的重新探讨

通过对翼蓼Pteroxygonum giraldii Damm. &; Diels及相关属(蓼属Polygonum、何首乌属Fallopia、虎杖属Reynoutria、荞麦属Fagopyrum和金线草属Antenoron)的形态观察、果实解剖学观察、花被片脉序观察、花粉形态、核型分析, 以及ITS序列的分析确定了翼蓼和荞麦F. esculentum Moench较远的亲缘关系。其中我们发现翼蓼果实基部有三个角状物明显不同于其他属果实的形态特征。翼蓼外果皮明显加厚, 并有零星散布的波状内腔, 而荞麦的外果皮很薄, 细胞不等径, 中果皮极厚。以上证据证明了翼蓼与荞麦属亲缘关系较远。在观察荞麦属和翼蓼的花被片脉络时发现了两种不同的脉序类型, 符合将荞麦属分为两个组的划分。翼蓼花被片脉序为三出状, 支持将翼蓼归为Persicarieae族。对翼蓼及荞麦属植物的花粉进行比较后, 发现荞麦属植物的花粉网孔有明显的内凹穿孔而翼蓼却没有, 结果表明二者亲缘关系较远。通过对nrDNA ITS区域序列分析得出翼蓼及相关属为一个单系类群, 含有两个稳定的分支: 第一个分支由蓼属(萹蓄组sect. Avicularia)、何首乌属、虎杖属的植物组成, 第二个分支由蓼属(刺蓼组sect. Echinocaulon、蓼组sect. Polygonum、分叉蓼组sect. Aconogonon、拳参组sect. Bistorta、翼蓼和荞麦属植物组成。同时第二个分支又分成了两个亚分支, 蓼属(刺蓼组、蓼组、分叉蓼组、拳参组)和翼蓼属Pteroxygonum植物属于第一个亚支而荞麦属植物属于第二个亚支。结果支持翼蓼不属于荞麦属的范畴。实验结果显示翼蓼是个单型属, 属于Persicarieae族。     

Pollinators underestimated: a molecular phylogeny reveals widespread floral convergence in oil-secreting orchids (sub-tribe Coryciinae) of the Cape of South Africa

The oil-secreting orchids of southern Africa belong to the sub-tribe Coryciinae within Diseae. A phylogeny of Diseae is inferred using sequence data from all genera in the tribe, with an emphasis on resolving generic classifications within Coryciinae. Nuclear (ITS) and plastid (trnLF and matK) gene region sequences were analysed for 79 ingroup taxa and three outgroup taxa. Coryciinae is confirmed to be diphyletic, with Disperis and Coryciinae sensu stricto (s.s.) forming separate monophyletic clades. The current genera Corycium and Pterygodium are not monophyletic according to our analysis and we propose a subdivision of Coryciinae s.s. into 10 monophyletic clades including three monotypic groups. Previous generic classifications of Coryciinae s.s. have been hampered by convergent evolution of floral parts, a consequence of few pollinator species and limited pollinia attachment sites in the oil-bee pollination system common to this group.     

Systematic Rearrangement of Korean <Emphasis Type="Italic">Scirpus</Emphasis> L. s.l. (Cyperaceae) as Inferred from Nuclear ITS and Chloroplast <Emphasis Type="Italic">rbcL</Emphasis> Sequences

The genus Scirpus L. s.l. (Cyperaceae) has been accepted as a polyphyletic taxon by most plant taxonomists. This genus was separated into different genera by several different authors: Scirpus s. str., Trichophorum Pers., Bolboschoenus (Asch.) Palla, Schoenoplectus (Rchb.) Palla, and Schoenoplectiella Lye. The heterogeneity of Korean Scirpus s.l. has not yet been studied. We examined 17 taxa of Korean Scirpus s.l. by morphological characters and phylogenetic analyses based on nuclear ITS and chloroplast rbcL sequences. Phylogenetic analyses using maximum parsimony, maximum likelihood, and Bayesian method provided sufficient resolution. The phylogeny revealed the polyphyly of Korean Scirpus s.l. with five distinct clades. These clades correspond to Bolboschoenus, Schoenoplectus s.str., and Schoenoplectiella, Scirpus s.str., and Trichophorum, respectively. These five genera were delimited in terms of the morphology of tuber, bract, and inflorescence. By virtue of our findings, we suggest that the 17 taxa of Korean Scirpus s.l. should be placed into five genera as follows: Bolboschoenus (two species), Schoenoplectus (three species), Schoenoplectiella (six species), Scirpus s.str. (five species), and Trichophorum (one species).