选择方向强化学习的神经网络模型

提出了神经网络模型的一种选择方向强化学习规则,定义并导出了新模型与Hopfield模型两种不同的筛选曲线,由此表明新模型对相关图样的分辨力优于Hopfield模型。在微机上模拟了由100个神经元构成的网络,结果显示新模型具有重复记忆这一神经生理学特点。定义并分行了记忆强度因子,模拟结果表明记忆强度因子愈大的记忆态,联想性能愈好,学习周期愈短。     

主动联想记忆神经网络模型

在信息编码能提高联想记忆的存贮能力和脑内存在主动活动机制的启发下,提出一个主动联想记忆模型。模型包括两个神经网络,其一为输入和输出网络,另一个为在学习时期能自主产生兴奋模式的主动网络。两个网络的神经元之间有突触联系。由于自主产生的兴奋模式与输入无关,并可能接近于相互正交,因此,本模型有较高的存贮能力。初步分析和计算机仿真证明：本模型确有比通常联想记忆模型高的存贮能力,特别是在输入模式间有高度相关情况下、最后,对提出的模型与双向自联想记忆和光学全息存贮机制的关系作了讨论。     

不同图样间联想的神经网络模型

本文讨论了Hopfield模型和其恢复特性。提出了不同图样间联想模型,推导了主态和辅态为初态时该模型的演化结果。对于30个随机图样、400个神经元组成的神经网络,给出了计算机模拟计算结果。并且讨论了不同情况下Hopfield模型和图样间联想模型的计算结果。     

一个仿真突触超微结构的三阶神经网络模型

神经系统内突触类型的多样性是与其机能的复杂性密切相关的.考虑到这一特性.本文用一个三阶神经网络模型仿真突触超微结构中的复合型连续性突触结构.作出了该模型的理论推导和分析.对由40个单元组成的网络系统作了计算机仿真、所得结果表明其存储容量可达680个图样.对其吸引盆也进行了仿真分析,对新模型与传统的Hebb学习律下的Hopfield模型进行了对比仿真.发现新模型具有比后者快得多的演化速率.     

注意机制在嗅球学习过程中的作用

神经生物实验表明, 气味信息在嗅球中是多通道并行处理的, 并且是可学习的, 学习结果依赖于学习时的认知环境. 对于不同类型的突触, 其突触前脉冲作用于突触后的有效时间不同. 按嗅球的生理结构, 构建了一个嗅球模型, 其中神经元间的不同类型的突触连接具有不同的脉冲有效时间. 模拟结果表明这一模型实现了嗅球中信息的多通道处理. 在此基础上, 进一步研究了认知环境对气味学习的影响, 并以不同的反馈频率来表征不同的注意状态. 为满足嗅球中多通道信息编码方式对学习律的要求, 提出了一个兼顾脉冲定时和平均发放速率的反对称的Hebb学习律. 模拟结果表明, 气味在嗅球中的敏感化和习惯化, 可能是在统一的学习律指导下的学习在不同注意状态下产生的结果.     

Izhikevich神经元网络的同步与联想记忆

联想记忆是人脑的一项重要功能。以Izhikevich神经元模型为节点,构建神经网络,神经元之间采用全连结的方式;以神经元群体的时空编码（spatio-temporal coding）理论研究所构建神经网络的联想记忆功能。在加入高斯白噪声的情况下,调节网络中神经元之间的连接强度的大小,当连接强度和噪声强度达到一个阈值时网络中部分神经元同步放电,实现了存储模式的联想记忆与恢复。仿真结果表明,神经元之间的连接强度在联想记忆的过程中发挥了重要的作用,噪声可以促使神经元间的同步放电,有助于神经网络实现存储模式的联想记忆与恢复。     

具有时滞的双向联想记忆神经网络的全局渐近稳定性

双向联想记忆模型是两层异联想网络,本文讨论了具有轴突信号传输时滞的双向联想记忆神经网络的全局渐近稳定性,得出了保证神经网络平衡点稳定的几个充分条件,所得到的结论对于具有时滞的连续双向联想记忆神经网络的设计和应用都是很有意义的。     

噪声对大鼠学习记忆的影响

噪声污染已无可争议地成为城市的主要环境公害之一。在噪声对学习、记忆影响程度的研究方面,国内外多数学者认为噪声主要影响学习能力和短时性记忆,而对长时性记忆没有影响或影响较小,故研究工作多集中于短时记忆功能上。目前有关噪声对学习记忆影响程度的大小、作用途径和机理仍很不清楚。本研究以噪声作用下动物电击回避反应为模型,     

条件联想神经网络研究

在人脑的某些功能和神经系统中的突前抑制机制启发下,本文提出一个新型的神经网络模型——条件联想神经网络.模型是一个有突触前抑制的联想记忆神经网络.通过初步分析和计算机模拟,证明本模型具有一般联想记忆模型所未有的一些新的特性,如可以在不同条件下,对同一输入有不同的反应.对同一输入,在不同的条件下,又可以有相同的反应.这些特点将有助于人们对神经系统中信息处理过程的了解.此外,文中也指出可能实现本模型的神经结构.     

综述: 学习和记忆的跨代遗传：果蝇能告诉我们真相吗？

学习记忆是一个获取、储存和再巩固新知识的过程,并以行为作为输出信号.学习记忆是高等生物适应动态环境不可或缺的。学习和记忆能力缺陷会导致精神类疾病,如精神分裂症、抑郁症和阿尔兹海默病等.近年来,有研究发现这些精神类疾病能够遗传给后代,所以以动物模型来研究学习和记忆的跨代遗传机制已经开始.在这篇综述里,首先简要概括了目前有关学习和记忆的分子机制、神经环路和跨代遗传的可能机制;然后,讨论了利用果蝇模型来研究学习和记忆跨代遗传的可能性.最后,我们提供了可能的策略用以揭示果蝇学习和记忆跨代遗传的表观遗传机制.     

Functional linear models for region-based association analysis

Regional association analysis is one of the most powerful tools for gene mapping because instead analysis of individual variants it simultaneously considers all variants in the region. Recent development of the models for regional association analysis involves functional data analysis approach. In the framework of this approach, genotypes of variants within region as well as their effects are described by continuous functions. Such approach allows us to use information about both linkage and linkage disequilibrium and reduce the influence of noise and/or observation errors. Here we define a functional linear mixed model to test association on independent and structured samples. We demonstrate how to test fixed and random effects of a set of genetic variants in the region on quantitative trait. Estimation of statistical properties of new methods shows that type I errors are in accordance with declared values and power is high especially for models with fixed effects of genotypes. We suppose that new functional regression linear models facilitate identification of rare genetic variants controlling complex human and animal traits. New methods are implemented in computer software FREGAT which is available for free download at http://mga.bionet.nsc.ru/soft/FREGAT/.     

The Interplay of Intrinsic and Extrinsic Bounded Noises in Biomolecular Networks

After being considered as a nuisance to be filtered out, it became recently clear that biochemical noise plays a complex role, often fully functional, for a biomolecular network. The influence of intrinsic and extrinsic noises on biomolecular networks has intensively been investigated in last ten years, though contributions on the co-presence of both are sparse. Extrinsic noise is usually modeled as an unbounded white or colored gaussian stochastic process, even though realistic stochastic perturbations are clearly bounded. In this paper we consider Gillespie-like stochastic models of nonlinear networks, i.e. the intrinsic noise, where the model jump rates are affected by colored bounded extrinsic noises synthesized by a suitable biochemical state-dependent Langevin system. These systems are described by a master equation, and a simulation algorithm to analyze them is derived. This new modeling paradigm should enlarge the class of systems amenable at modeling. We investigated the influence of both amplitude and autocorrelation time of a extrinsic Sine-Wiener noise on: the Michaelis-Menten approximation of noisy enzymatic reactions, which we show to be applicable also in co-presence of both intrinsic and extrinsic noise, a model of enzymatic futile cycle and a genetic toggle switch. In and we show that the presence of a bounded extrinsic noise induces qualitative modifications in the probability densities of the involved chemicals, where new modes emerge, thus suggesting the possible functional role of bounded noises.     

Traffic Noise and Inequality in the Twin Cities,Minnesota

It is widely known that prolonged exposure to high levels of traffic noise has several health effects. While scholarship in environmental justice has explored the environmental equity hypothesis in a wide range of areas, whether the spatial distribution of traffic noise is equitable among different racial and socioeconomic groups has rarely been explored, especially in the United States. This article addresses this lacuna by examining this relationship in the Twin Cities Metro Region, Minnesota. Traffic data from the Minnesota Department of Transportation were used to model the propagation of traffic noise over the study area and aircraft noise contour lines were added to account for aircraft noise. Inequities associated with exposure to chronic traffic noise were investigated using selected demographic and socioeconomic variables from the U.S. Census 2000. Statistical analysis was based on a regression model that addressed spatial autocorrelation. Results indicate that there is an association between noise levels and household income, median household value, the percentage of non-white residents, and the percentage of the population less than 18 years of age.     

Residential Exposure to Road and Railway Noise and Risk of Prostate Cancer: A Prospective Cohort Study

Background

Few modifiable risk factors for prostate cancer are known. Recently, disruption of the circadian system has been proposed to affect risk, as it entails an inhibited melatonin production, and melatonin has demonstrated beneficial effects on cancer inhibition. This suggests a potential role of traffic noise in prostate cancer.

Methods

Road traffic and railway noise was calculated for all present and historical addresses from 1987–2010 for a cohort of 24,473 middle-aged, Danish men. During follow-up, 1,457 prostate cancer cases were identified. We used Cox Proportional Hazards Models to calculate the association between noise exposure and incident prostate cancer. Incidence Rate Ratios (IRR) were calculated as crude and adjusted for smoking status, education, socioeconomic position, BMI, waist circumference, physical activity, calendar year, and traffic noise from other sources than the one investigated.

Results

There was no association between residential road traffic noise and risk of prostate cancer for any of the three exposure windows: 1, 5 or 10-year mean noise exposure before prostate cancer diagnosis. This result persisted when stratifying cases by aggressiveness. For railway noise, there was no association with overall prostate cancer. There was no statistically significant effect modification by age, education, smoking status, waist circumference or railway noise, on the association between road traffic noise and prostate cancer, although there seemed to be a suggestion of an association among never smokers (IRR: 1.16; 95% CI: 1.00–1.36).

Conclusion

The present study does not support an overall association between either railway or road traffic noise and overall prostate cancer.     

Stochastic search variable selection based on two mixture components and continuous‐scale weighting

Stochastic search variable selection (SSVS) is a Bayesian variable selection method that employs covariate‐specific discrete indicator variables to select which covariates (e.g., molecular markers) are included in or excluded from the model. We present a new variant of SSVS where, instead of discrete indicator variables, we use continuous‐scale weighting variables (which take also values between zero and one) to select covariates into the model. The improved model performance is shown and compared to standard SSVS using simulated and real quantitative trait locus mapping datasets. The decision making to decide phenotype‐genotype associations in our SSVS variant is based on median of posterior distribution or using Bayes factors. We also show here that by using continuous‐scale weighting variables it is possible to improve mixing properties of Markov chain Monte Carlo sampling substantially compared to standard SSVS. Also, the separation of association signals and nonsignals (control of noise level) seems to be more efficient compared to the standard SSVS. Thus, the novel method provides efficient new framework for SSVS analysis that additionally provides whole posterior distribution for pseudo‐indicators which means more information and may help in decision making.     

Noise enhances subthreshold oscillations in injured primary sensory neurons

Noise can play a constructive role in the detection of weak signals in various kinds of peripheral receptors and neurons. What the mechanism underlying the effect of noise is remains unclear. Here, the perforated patch-clamp technique was used on isolated cells from chronic compression of the dorsal root ganglion (DRG) model. Our data provided new insight indicating that, under conditions without external signals, noise can enhance subthreshold oscillations, which was observed in a certain type of neurons with high-frequency (20-100 Hz) intrinsic resonance from injured DRG neurons. The occurrence of subthreshold oscillation considerably decreased the threshold potential for generating repetitive firing. The above effects of noise can be abolished by blocking the persistent sodium current (I(Na, P)). Utilizing a mathematical neuron model we further simulated the effect of noise on subthreshold oscillation and firing, and also found that noise can enhance the electrical activity through autonomous stochastic resonance. Accordingly, we propose a new concept of the effects of noise on neural intrinsic activity, which suggests that noise may be an important factor for modulating the excitability of neurons and generation of chronic pain signals.     

Analysis of self-associating proteins by singular value decomposition of solution scattering data

We describe a method by which a single experiment can reveal both association model (pathway and constants) and low-resolution structures of a self-associating system. Small-angle scattering data are collected from solutions at a range of concentrations. These scattering data curves are mass-weighted linear combinations of the scattering from each oligomer. Singular value decomposition of the data yields a set of basis vectors from which the scattering curve for each oligomer is reconstructed using coefficients that depend on the association model. A search identifies the association pathway and constants that provide the best agreement between reconstructed and observed data. Using simulated data with realistic noise, our method finds the correct pathway and association constants. Depending on the simulation parameters, reconstructed curves for each oligomer differ from the ideal by 0.05-0.99% in median absolute relative deviation. The reconstructed scattering curves are fundamental to further analysis, including interatomic distance distribution calculation and low-resolution ab initio shape reconstruction of each oligomer in solution. This method can be applied to x-ray or neutron scattering data from small angles to moderate (or higher) resolution. Data can be taken under physiological conditions, or particular conditions (e.g., temperature) can be varied to extract fundamental association parameters (ΔH_ass, ΔS_ass).     

Diffusion of transcription factors can drastically enhance the noise in gene expression

We study by Green's Function Reaction Dynamics the effect of the diffusive motion of repressor molecules on the noise in mRNA and protein levels for a gene that is under the control of a repressor. We find that spatial fluctuations due to diffusion can drastically enhance the noise in gene expression. After dissociation from the operator, a repressor can rapidly rebind to the DNA. Our results show that the rebinding trajectories are so short that, on this timescale, the RNA polymerase (RNAP) cannot effectively compete with the repressor for binding to the promoter. As a result, a dissociated repressor molecule will on average rebind many times, before it eventually diffuses away. These rebindings thus lower the effective dissociation rate, and this increases the noise in gene expression. Another consequence of the timescale separation between repressor rebinding and RNAP association is that the effect of spatial fluctuations can be described by a well-stirred, zero-dimensional, model by renormalizing the reaction rates for repressor-DNA (un) binding. Our results thus support the use of well-stirred, zero-dimensional models for describing noise in gene expression. We also show that for a fixed repressor strength, the noise due to diffusion can be minimized by increasing the number of repressors or by decreasing the rate of the open complex formation. Lastly, our results emphasize that power spectra are a highly useful tool for studying the propagation of noise through the different stages of gene expression.     

Redefining the maximum sustainable yield for the Schaefer population model including multiplicative environmental noise

The focus of this article is to investigate the biological reference points, such as the maximum sustainable yield (MSY), in a common Schaefer (logistic) surplus production model in the presence of a multiplicative environmental noise. This type of model is used in fisheries stock assessment as a first-hand tool for biomass modelling. Under the assumption that catches are proportional to the biomass, we derive new conditions on the environmental noise distribution such that stationarity exists and extinction is avoided. We then get new explicit results about the stationary behavior of the biomass distribution for a particular specification of the noise, namely the biomass distribution itself and a redefinition of the MSY and related quantities that now depend on the value of the variance of the noise. Consequently, we obtain a more precise vision of how less optimistic the stochastic version of the MSY can be than the traditionally used (deterministic) MSY. In addition, we give empirical conditions on the error variance to approximate our specific noise by a lognormal noise, the latter being more natural and leading to easier inference in this context. These conditions are mild enough to make the explicit results of this paper valid in a number of practical applications. The outcomes of two case-studies about northwest Atlantic haddock [Spencer, P.D., Collie, J.S., 1997. Effect of nonlinear predation rates on rebuilding the Georges Bank haddock (Melanogrammus aeglefinus) stock. Can. J. Fish. Aquat. Sci. 54, 2920-2929] and South Atlantic albacore tuna [Millar, R.B., Meyer, R., 2000. Non-linear state space modelling of fisheries biomass dynamics by using Metropolis-Hastings within-Gibbs sampling. Appl. Stat. 49, 327-342] are used to illustrate the impact of our results in bioeconomic terms.