Integral role of the I′-helix in the function of the “inactive” C-terminal domain of catalase–peroxidase (KatG)

Catalase–peroxidases (KatGs) have two peroxidase-like domains. The N-terminal domain contains the heme-dependent, bifunctional active site. Though the C-terminal domain lacks the ability to bind heme or directly catalyze any reaction, it has been proposed to serve as a platform to direct the folding of the N-terminal domain. Toward such a purpose, its I′-helix is highly conserved and appears at the interface between the two domains. Single and multiple substitution variants targeting highly conserved residues of the I′-helix were generated for intact KatG as well as the stand-alone C-terminal domain (KatG^C). Single variants of intact KatG produced only subtle variations in spectroscopic and catalytic properties of the enzyme. However, the double and quadruple variants showed substantial increases in hexa-coordinate low-spin heme and diminished enzyme activity, similar to that observed for the N-terminal domain on its own (KatG^N). The analogous variants of KatG^C showed a much more profound loss of function as evaluated by their ability to return KatG^N to its active conformation. All of the single variants showed a substantial decrease in the rate and extent of KatG^N reactivation, but with two substitutions, KatG^C completely lost its capacity for the reactivation of KatG^N. These results suggest that the I′-helix is central to direct structural adjustments in the adjacent N-terminal domain and supports the hypothesis that the C-terminal domain serves as a platform to direct N-terminal domain conformation and bifunctionality.     

Cryptohelops menaticus – a new genus and species of the tribe Helopini (Coleoptera: Tenebrionidae) from the Palaeocene of Menat (France)

A new genus and species, Cryptohelops menaticus gen. et sp. n., are described from the Palaeocene of Menat (France). The new genus belongs to the subtribe Helopina of the tribe Helopini (subfamily Tenebrioninae of Tenebrionidae) based on the coarse and dense punctation of the hypomera, shape of the prosternum and metepisterna, a similar appearance to the native genera Helops and Stenohelops and the structure of the epipleura. The new genus also resembles Raiboscelis and Entomogonus by having the protibiae excised along the base of the inner side. The new genus is the oldest representative of the tribe Helopini. Four species of Helops sensu lato previously described from the Oligocene (H. wetteravicus K. Heyden et L. Heyden, 1865) and Miocene (H. atticus Redtenbacher in Ungern, 1867; H. meissneri Heer, 1847 and H. molassicus Heer, 1883) lack important diagnostic characters and should be regarded as members of the tribe Helopini with uncertain generic attribution.     

External morphology of the male and female of Sphyrion lumpi (Krøyer,1845) (Copepoda; Siphonostomatoida; Sphyriidae)

Sphyrion lumpi is a sexually dimorphic, parasitic copepod which causes significant losses in fisheries in the North Atlantic. Studies involving both light and scanning electron microscopy revealed important details of the external morphology of both sexes that are discussed in relation to other members of the family Sphyriidae. Conclusions are drawn regarding the life cycle of S. lumpi. The present finding of this parasite on Urophycis tenuis constitutes a new host record.     

A revision of the genus Planinasus Cresson (Diptera,?Periscelididae)

The genus Planinasus Cresson is revised and includes 18 extant and one fossil species. We clarify the status of the three previously described species and describe 15 new species as follows (type locality in parenthesis): Planinasus aenigmaticus (Colombia. Bogota: Bogota (04°35.8''N, 74°08.8''W)), Planinasus neotropicus (Panama. Canal Zone: Barro Colorado Island (09°09.1''N, 79°50.8''W)), Planinasus kotrbae (Ecuador. Orellana: Rio Tiputini Biodiversity Station (0°38.2''S, 76°08.9''W)), Planinasus miradorus (Brazil. Maranhão: Parque Estadual Mirador, Base da Geraldina (06°22.2''S, 44°21.8''W)), Planinasus tobagoensis (Trinidad and Tobago. Tobago. St. John: Parlatuvier (11°17.9''N, 60°39''W)), Planinasus xanthops (Ecuador. Orellana: Rio Tiputini Biodiversity Station (0°38.2''S, 76°8.9''W)), Planinasus argentifacies (Peru. Madre de Dios: Río Manu, Pakitza (11°56.6''S, 71°16.9''W; 250 m)), Planinasus insulanus (Dominican Republic. La Vega: near Jarabacoa, Salto Guasara (19°04.4''N, 70°42.1''W, 680 m)), Planinasus nigritarsus (Guyana. Conservation of Ecological Interactions and Biotic Associations (CEIBA; ca. 40 km S Georgetown; 06°29.9''N, 58°13.1''W)), Planinasus atriclypeus (Brazil. Rio de Janeiro: Rio de Janeiro, Floresta da Tijuca (22°57.6''S, 43°16.4''W)), Planinasus atrifrons (Bolivia. Santa Cruz: Ichilo, Buena Vista (4-6 km SSE; Hotel Flora y Fauna; 17°29.95''S, 63°33.15''W; 4-500 m)), P. flavicoxalis (West Indies. Dominica. St. David: 1.6 km N of junction of roads to Rosalie and Castle Bruce (15°23.8''N, 61°18.6''W)), Planinasus mcalpineorum (Mexico. Chiapas: Cacahoatan (7 km N; 15°04.1''N, 92°07.4''W)), Planinasus nigrifacies (Brazil. São Paulo: Mogi das Cruzes, Serra do Itapeti (23°31.5''S, 46°11.2''W)), Planinasus obscuripennis (Peru. Madre de Dios: Río Manu, Erika (near Salvación; 12°50.7''S, 71°23.3''W; 550 m)). In addition to external characters, we also describe and illustrate structures of the male terminalia and for Planinasus kotrbae sp. n., the internal female reproductive organs. Detailed locality data and distribution maps for all species are provided. For perspective and to facilitate genus-group and species-group recognition, the family Periscelididae and subfamily Stenomicrinae are diagnosed and for the latter, a key to included genera is provided.     

Induction of androgenetic development of the brook charr (Salvelinus fontinalis) × Arctic charr (Salvelinus alpinus) hybrids in eggs derived from the parental species

Failure of interspecific androgenesis between brook charr (Salvelinus fontinalis, Mitchill 1814) and Arctic charr (Salvelinus alpinus, L.) has been attributed to the conflict between the egg cytoplasm of one species and the sperm nucleus of the other species. To overcome this incompatibility, sperm derived from the brook charr × Arctic charr hybrid male was used to induce androgenetic development in eggs originating from the parental species as well as their hybrids. The eggs were subjected to 420 Gy of X-radiation to damage the maternal nuclear DNA and inseminated with untreated sperm. Haploid zygotes were exposed to high hydrostatic pressure shock (7000 psi for 4 min), which was applied 420 min after insemination to inhibit the first cell cleavage and recover the diploid state of the zygote. The androgenetic diploid offspring that hatched from the brook charr, the Arctic charr and the hybrids eggs had survival rates of 4.7 ± 0.6%, 1.2 ± 0.4% and 16.8 ± 0.5%, respectively. Drastic mortality among the hatched androgenetic individuals was observed within the first five months of rearing. Cytogenetic analysis of the androgenetic progenies exhibited residues of the irradiated maternal nuclear genome in the form of radiation-induced chromosome fragments in 47% of the specimens that were examined. Interactions between the egg cytoplasm and the sperm nucleus, the low quality of the gametes, the expression of homozygous paternal lethal alleles and the incomplete inactivation of the maternal chromosomes were identified as factors responsible for the large mortality among androgenetic embryos and hatchlings.     

Organization of the lamina ganglionaris of the optic lobe of the butterfly Pararge aegeria (Linné) (Lepidoptera : Satyridae)

The present work reports on a neuroanatomical study of the butterfly Pararge aegeria (Lepidoptera : Satyridae) focusing on the lamina ganglionaris underlying two different regions of the retina of the compound eye: the dorsal rim area and the large dorsal region. No differences between both lamina regions, concerning the structure of the cartridges and the morphology of the identified neurons, could be detected. After passing the basement membrane, the visual cell axons are organized in retinotopic bundles (pseudocartridges), in which the axons of the 9 visual cells (V1 and 5, D2, 4, 6, 8, H3 and 7, B9) are arranged in the same way as in the retina. In the pseudocartridge there are no synaptic contacts. Before entering the lamina cartridge, the bundles rotate 90 °. The cartridges are joined by the fibres of 4 monopolar cells (L1, L2, L3 and L4), which could be identified and located inside the lamina cartridges in serial EM-sections. Golgi impregnations revealed the morphology of these fibres. Thus, the regional specialization of the retina (dorsal rim area and large dorsal region) does not seem to be reflected at the level of the first visual neuropil. Additionally, the cartridges of both lamina regions were investigated qualitatively for synaptic contacts among fibres. In addition to monadic chemical synapses and multiple contact synapses with presynaptic ribbons, cell contacts are also facilitated by invaginations and bridges. These cellular interactions and their functional implications are discussed.     

Genetic variation of <Emphasis Type="Italic">Ulva (Enteromorpha) prolifera</Emphasis> (Ulvales,Chlorophyta)—the causative species of the green tides in the Yellow Sea,China

Ulva (Enteromorpha) prolifera, widely distributed from the intertidal to the upper subtidal zones around the world, was the dominant species of the massive green tides in the Yellow Sea in the summers of 2007, 2008, and 2009. However, little is known about its intra-species genetic diversity. In this study, six attached and seven floating U. prolifera samples collected from different sites distributed from the north of the Yellow Sea to the south of the East China Sea were taken in inter-simple sequence repeat (ISSR) analysis. Based on the results of the 90 polymorphic bands from four ISSR primers, the genetic diversity level of the floating samples (H = 0.1663, I = 0.2608) was found to be lower than that of the attached samples (H = 0.2105, I = 0.3346). Unweighted pair-group mean analysis (UPGMA) and principal coordinate analysis (PCoA) suggested that floating U. prolifera samples in the Yellow Sea from 2007 to 2009 had a close genetic relationship, and the floating samples were separated from the attached samples. Genetic differentiation and limited gene flow among attached U. prolifera populations were indicated by analysis of molecular variance.     

Food spectra of the farm juveniles of the Chum Salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> (Salmoniformes,Salmonidae) in the Ryazanovka River (Southern Primor’e)

Qualitative data are presented on the diet of juvenile chum salmon Oncorhynchus keta released from the Ryazanovka experimental fish hatchery farm situated in the south of Primor’e Territory. The stomach fullness, frequency of occurrence of food items, their average weight value, and selectivity are estimated. Food spectra of chum salmon juveniles during downstream migration comprised representatives of 51 taxa of bottom freshwater invertebrates and terrestrial insects. The bulk of the diet consisted of larvae of aquatic insects—chironomids, other Diptera, and mayflies. Their diversity increased with the growth of fry. Fry of chum salmon had a wide spectrum of feeding preference, favorite food items were larvae and pupae of chironomids.     

Phylogeny of the Alismatales (Monocotyledons) and the relationship of Acorus (Acorales?)

A phylogenetic analysis of the early branching lineages of the monocotyledons is performed using data from two plastid genes (rbcL and matK), five mitochondrial genes (atp1, ccmB, cob, mttB and nad5) and morphology. The complete matrix includes 93 terminals representing Acorus, the 14 families currently recognized within Alismatales, and numerous lineages of monocotyledons and other angiosperms. Total evidence analysis results in an almost completely resolved strict consensus tree, but all data partitions, genomic as well as morphological, are incongruent. The effects of RNA editing and potentially processed paralogous sequences are explored and discussed. Despite a decrease in incongruence length differences after exclusion of edited sites, the major data partitions remain significantly incongruent. The 14 families of Alismatales are all found to be monophyletic, but Acorus is found to be included in Alismatales rather than being the sister group to all other monocotyledons. The placement is strongly supported by the mitochondrial data, atp1 in particular, but it cannot be explained as an artifact caused by patterns of editing or by sampling of processed paralogues.     

Synchronous phenology of hawkmoths (Sphingidae) and <Emphasis Type="Italic">Inga</Emphasis> species (Fabaceae–Mimosoideae): implications for the restoration of the Atlantic forest of northeastern Brazil

Biotic and abiotic factors such as resource availability and rainfall may exert influence on the life cycle of several organisms. In this study, we investigated correlations between the phenology of hawkmoths, flowering phenology of Inga Mill. species (Fabaceae–Mimosoideae–Ingeae) and rainfall in one of the largest remnants of Atlantic forest in northeastern Brazil (Coimbra forest with ca. 3500 ha). We carried out monthly hawkmoth inventories and phenological observations of the five most abundant Inga species in Coimbra forest from October 2005 to August 2007. Altogether 39 hawkmoth individuals were collected with light trap or butterfly net, which were ascribed to nine genera and 14 species. With the present study Pachygonidia caliginosa Boisduval (Bombycoidea–Sphingidae–Dilophonotina) is registered for the second time in Brazil, since the species had been previously collected only in the Amazon. The tribe Dilophonotina was the most represented with five species. Animals with short proboscises (14.7–35.0 mm) represented over 69.7% of the sample. Most individuals were collected during the months of low rainfall, the same period of the highest flower abundance of five Inga species. The flowering of Inga vera, I. striata and I. ingoides was positively correlated with hawkmoth abundance. The synchrony of the activity period of these animals in adult phase with certain nectar sources, and the relationship between morphological parameters of hawkmoths and Inga flowers suggest a narrow pollination mutualistic relationship at the study site. Considering the hotspot status of the Atlantic forest due to high fragmentation and habitat loss, as well as the previous local extinction of hawkmoth species in smaller fragments of the studied landscape, our results are relevant for restoration plans not only for the Brazilian Atlantic forest, but for neotropical forests in general, where Inga is native.     

First records of the genus <Emphasis Type="Italic">Mirovia</Emphasis> Reymanówna (Miroviaceae,Coniferales) from the Lower Jurassic of Western Kazakhstan (Mangyshlak)

Two new species, Mirovia asiatica sp. nov. and Mirovia kazachstanica sp. nov., are described from the Lower Jurassic of Mangyshlak (western Kazakhstan). Representatives of Mirovia Reymanówna are for the first time found in the Lower Jurassic and for the first time in Central Asia. A new combination, M. eximia (Gordenko), comb. nov., is proposed. The morphology of stomatal guard cells is described in detail, based on examination of cross sections of leaves.     

New Remains of the Multituberculate Mammal <Emphasis Type="Italic">Barbatodon</Emphasis> from the Upper Cretaceous of the Hațeg Basin (Romania)

The so-called “Ha?eg Island” (Transylvania, Romania) is well known for its rich and peculiar Late Cretaceous vertebrate assemblages, including dwarf dinosaurs, first reported at the end of the 19th century. Besides dinosaurs, other important members of the “Ha?eg Island” terrestrial ecosystems were the multituberculate mammals. Late Cretaceous (Maastrichtian) multituberculates are extremely rare in Europe, being known exclusively from the “Ha?eg Island.” Two genera are reported from this area: Kogaionon, with the single species K. ungureanui, and Barbatodon, with two species: B. transylvanicus and B. oardaensis. Both genera belong to the European endemic family Kogaionidae. We report herein new remains of B. transylvanicus from the Maastrichtian locality of Pui (Hunedoara District) in the Ha?eg Basin, including the most complete dentaries found to date with complete cheek teeth rows. Intraspecific variability of this species in dentary shape, tooth morphology, and size difference is highlighted.     

On the species of the genus <Emphasis Type="Italic">Diplocheila</Emphasis> Brullé (Coleoptera: Carabidae) of the Far East of Russia,with a brief review of the East Asian species

A taxonomic review of seven species of Diplocheila of the Far East of Russia and adjacent lands is given. Three species are known from the Russian Far East, two of which, D. zeelandica Redt. and D. minima Jedl., are recorded from Russia for the first time. A key to the East Asian species is presented. Composition and diagnoses of subgenera are discussed. The subgenus Submera Habu is restored.     

Effect of the alkaline cations on the stability of the model polynucleotide poly(dG-dC)·poly(dG-dC)

When the model polynucleotide poly(dG-dC)?poly(dG-dC) [polyGC] is titrated with a strong acid (HCl) in unbuffered aqueous solutions containing the chlorides of the alkali metals in the concentration range 0.010?M-0.600?M, two transitions in the absorbance vs. pH plots are evidenced, characterized by the constants pK(a(?)) and pK(a(?)). The limiting values at infinite saline concentrations of these two constants, namely pK(∞)(a(?)) and pK(∞)(a(?)) obtained making use of the "one site saturation constant" equation or, in turn, of the double logarithmic plot: pK(a) vs. log([salt]?1), exhibit a clear dependence on the nature of the cations. The effects of the different alkali cations on the pK(∞)(a) values follow the Hofmeister series. In fact, the pK(∞)(a(?)) and the pK(∞)(a(?)) values are smaller for Li+ and Na+ than for Rb+ and Cs+, with K+ at the border between the two, showing that the transitions require higher concentrations of protons to occur in the presence of high concentrations of the cosmotropic ions.     

Microsatellite assessment of the genetic diversity in indigenous populations of curimba (<Emphasis Type="Italic">Prochilodus argenteus</Emphasis>) in the São Francisco river (Brazil)

The freshwater fish curimba (Prochilodus argenteus) is an endemic species of the São Francisco River basin, with great aquaculture potential. The construction of several hydroelectric power dams along the river, and the pulsed releases of water from these dams altered and degraded the native fish habitats, which led to the development of a hatchery-reared fingerling restocking program. A comprehensive genetic baseline evaluation of the indigenous populations of curimba and of a hatchery stock was done using microsatellite markers. Pairwise F _ST values, Bayesian analysis and the number of migrants per generation were used to illustrate the genetic structure of the curimba populations along almost 3000 km of the river, suggesting the existence of three units of conservation: one in the Upper, a second in the Middle and a third including part of the Middle, Submiddle and Lower stretches. We have analyzed the genetic contribution of hatchery stock releases in two stretches of the river using individual admixture coefficients; and the results showed that admixture makes a negligible contribution to indigenous recruitment. We discussed about supplementation programs for this river from the perspective of three units of conservation and the risks associated with using domesticated fish.