Tree mycorrhizal type predicts within‐site variability in the storage and distribution of soil organic matter

Forest soils store large amounts of carbon (C) and nitrogen (N), yet how predicted shifts in forest composition will impact long‐term C and N persistence remains poorly understood. A recent hypothesis predicts that soils under trees associated with arbuscular mycorrhizas (AM) store less C than soils dominated by trees associated with ectomycorrhizas (ECM), due to slower decomposition in ECM‐dominated forests. However, an incipient hypothesis predicts that systems with rapid decomposition—e.g. most AM‐dominated forests—enhance soil organic matter (SOM) stabilization by accelerating the production of microbial residues. To address these contrasting predictions, we quantified soil C and N to 1 m depth across gradients of ECM‐dominance in three temperate forests. By focusing on sites where AM‐ and ECM‐plants co‐occur, our analysis controls for climatic factors that covary with mycorrhizal dominance across broad scales. We found that while ECM stands contain more SOM in topsoil, AM stands contain more SOM when subsoil to 1 m depth is included. Biomarkers and soil fractionations reveal that these patterns are driven by an accumulation of microbial residues in AM‐dominated soils. Collectively, our results support emerging theory on SOM formation, demonstrate the importance of subsurface soils in mediating plant effects on soil C and N, and indicate that shifts in the mycorrhizal composition of temperate forests may alter the stabilization of SOM.     

Anthropogenic N deposition increases soil organic matter accumulation without altering its biochemical composition

Accumulating evidence indicates that future rates of atmospheric N deposition have the potential to increase soil C storage by reducing the decay of plant litter and soil organic matter (SOM). Although the microbial mechanism underlying this response is not well understood, a decline in decay could alter the amount, as well as biochemical composition of SOM. Here, we used size‐density fractionation and solid‐state ¹³C‐NMR spectroscopy to explore the extent to which declines in microbial decay in a long‐term (ca. 20 yrs.) N deposition experiment have altered the biochemical composition of forest floor, bulk mineral soil, as well as free and occluded particulate organic matter. Significant amounts of organic matter have accumulated in occluded particulate organic matter (~20%; oPOM); however, experimental N deposition had not altered the abundance of carboxyl, aryl, alkyl, or O/N‐alkyl C in forest floor, bulk mineral soil, or any soil fraction. These observations suggest that biochemically equivalent organic matter has accumulated in oPOM at a greater rate under experimental N deposition, relative to the ambient treatment. Although we do not understand the process by which experimental N deposition has fostered the occlusion of organic matter by mineral soil particles, our results highlight the importance of interactions among the products of microbial decay and the chemical and physical properties of silt and clay particles that occlude organic matter from microbial attack. Because oPOM can reside in soils for decades to centuries, organic matter accumulating under future rates of anthropogenic N deposition could remain in soil for long periods of time. If temperate forest soils in the Northern Hemisphere respond like those in our experiment, then unabated deposition of anthropogenic N from the atmosphere has the potential to foster greater soil C storage, especially in fine‐texture forest soils.     

Disentangling the long‐term effects of disturbance on soil biogeochemistry in a wet tropical forest ecosystem

Climate change is increasing the intensity of severe tropical storms and cyclones (also referred to as hurricanes or typhoons), with major implications for tropical forest structure and function. These changes in disturbance regime are likely to play an important role in regulating ecosystem carbon (C) and nutrient dynamics in tropical and subtropical forests. Canopy opening and debris deposition resulting from severe storms have complex and interacting effects on ecosystem biogeochemistry. Disentangling these complex effects will be critical to better understand the long‐term implications of climate change on ecosystem C and nutrient dynamics. In this study, we used a well‐replicated, long‐term (10 years) canopy and debris manipulation experiment in a wet tropical forest to determine the separate and combined effects of canopy opening and debris deposition on soil C and nutrients throughout the soil profile (1 m). Debris deposition alone resulted in higher soil C and N concentrations, both at the surface (0–10 cm) and at depth (50–80 cm). Concentrations of NaOH‐organic P also increased significantly in the debris deposition only treatment (20–90 cm depth), as did NaOH‐total P (20–50 cm depth). Canopy opening, both with and without debris deposition, significantly increased NaOH‐inorganic P concentrations from 70 to 90 cm depth. Soil iron concentrations were a strong predictor of both C and P patterns throughout the soil profile. Our results demonstrate that both surface‐ and subsoils have the potential to significantly increase C and nutrient storage a decade after the sudden deposition of disturbance‐related organic debris. Our results also show that these effects may be partially offset by rapid decomposition and decreases in litterfall associated with canopy opening. The significant effects of debris deposition on soil C and nutrient concentrations at depth (>50 cm), suggest that deep soils are more dynamic than previously believed, and can serve as sinks of C and nutrients derived from disturbance‐induced pulses of organic matter inputs.     

Litter type control on soil C and N stabilization dynamics in a temperate forest

While plant litters are the main source of soil organic matter (SOM) in forests, the controllers and pathways to stable SOM formation remain unclear. Here, we address how litter type (¹³C/¹⁵N‐labeled needles vs. fine roots) and placement‐depth (O vs. A horizon) affect in situ C and N dynamics in a temperate forest soil after 5 years. Litter type rather than placement‐depth controlled soil C and N retention after 5 years in situ, with belowground fine root inputs greatly enhancing soil C (x1.4) and N (x1.2) retention compared with aboveground needles. While the proportions of added needle and fine root‐derived C and N recovered into stable SOM fractions were similar, they followed different transformation pathways into stable SOM fractions: fine root transfer was slower than for needles, but proportionally more of the remaining needle‐derived C and N was transferred into stable SOM fractions. The stoichiometry of litter‐derived C vs. N within individual SOM fractions revealed the presence at least two pools of different turnover times (per SOM fraction) and emphasized the role of N‐rich compounds for long‐term persistence. Finally, a regression approach suggested that models may underestimate soil C retention from litter with fast decomposition rates.     

Soil carbon stocks and changes after oil palm introduction in the Brazilian Amazon

As oil palm has been considered one of the most favorable oilseeds for biodiesel production in Brazil, it is important to understand how cultivation of this perennial crop will affect the dynamics of soil organic carbon (SOC) in the long term. The aim of this study was to evaluate the changes in soil C stocks after the conversion of forest and pasture into oil palm production in the Amazon Region. Soil samples were collected in March 2008 and September 2009 in five areas: native forest (NARF), pasture cultivated for 55 years (PAST), and oil palm cultivated for 4 (OP‐4), 8 (OP‐8) and 25 years (OP‐25), respectively. Soils were sampled in March 2008 to evaluate the spatial variability of SOC and nitrogen (N) contents in relation to the spacing between trees. In September 2009, soils were sampled to evaluate the soil C stocks in the avenues (inter rows) and frond piles, and to compare the total C stocks with natural forest and pasture system. Soil C contents were 22–38% higher in the area nearest the oil palm base (0.6 m) than the average across the inter row (0–4.5 m from the tree), indicating that the increment in soil organic matter (SOM) must have been largely derived from root material. The soil C stocks under palm frond piles were 9–26% higher than in the inter rows, due to inputs of SOM by pruned palm fronds. The soil carbon stocks in oil palm areas, after adjustments for differences in bulk density and clay content across treatments, were 35–46% lower than pasture soil C stocks, but were 0–18% higher than the native forest soil C content. The results found here may be used to improve the life cycle assessment of biodiesel derived from palm oil.     

Long‐term changes in forest carbon under temperature and nitrogen amendments in a temperate northern hardwood forest

Currently, forests in the northeastern United States are net sinks of atmospheric carbon. Under future climate change scenarios, the combined effects of climate change and nitrogen deposition on soil decomposition, aboveground processes, and the forest carbon balance remain unclear. We applied carbon stock, flux, and isotope data from field studies at the Harvard forest, Massachusetts, to the ForCent model, which integrates above‐ and belowground processes. The model was able to represent decadal‐scale measurements in soil C stocks, mean residence times, fluxes, and responses to a warming and N addition experiment. The calibrated model then simulated the longer term impacts of warming and N deposition on the distribution of forest carbon stocks. For simulation to 2030, soil warming resulted in a loss of soil organic matter (SOM), decreased allocation to belowground biomass, and gain of aboveground carbon, primarily in large wood, with an overall small gain in total system carbon. Simulated nitrogen addition resulted in a small increase in belowground carbon pools, but a large increase in aboveground large wood pools, resulting in a substantial increase in total system carbon. Combined warming and nitrogen addition simulations showed a net gain in total system carbon, predominately in the aboveground carbon pools, but offset somewhat by losses in SOM. Hence, the impact of continuation of anthropogenic N deposition on the hardwood forests of the northeastern United States may exceed the impact of warming in terms of total ecosystem carbon stocks. However, it should be cautioned that these simulations do not include some climate‐related processes, different responses from changing tree species composition. Despite uncertainties, this effort is among the first to use decadal‐scale observations of soil carbon dynamics and results of multifactor manipulations to calibrate a model that can project integrated aboveground and belowground responses to nitrogen and climate changes for subsequent decades.     

Successional and seasonal variations in soil and litter microbial community structure and function during tropical postagricultural forest regeneration: a multiyear study

Soil microorganisms regulate fundamental biochemical processes in plant litter decomposition and soil organic matter (SOM) transformations. Understanding how microbial communities respond to changes in vegetation is critical for improving predictions of how land‐cover change affects belowground carbon storage and nutrient availability. We measured intra‐ and interannual variability in soil and forest litter microbial community composition and activity via phospholipid fatty acid analysis (PLFA) and extracellular enzyme activity across a well‐replicated, long‐term chronosequence of secondary forests growing on abandoned pastures in the wet subtropical forest life zone of Puerto Rico. Microbial community PLFA structure differed between young secondary forests and older secondary and primary forests, following successional shifts in tree species composition. These successional patterns held across seasons, but the microbial groups driving these patterns differed over time. Microbial community composition from the forest litter differed greatly from those in the soil, but did not show the same successional trends. Extracellular enzyme activity did not differ with forest succession, but varied by season with greater rates of potential activity in the dry seasons. We found few robust significant relationships among microbial community parameters and soil pH, moisture, carbon, and nitrogen concentrations. Observed inter‐ and intrannual variability in microbial community structure and activity reveal the importance of a multiple, temporal sampling strategy when investigating microbial community dynamics with land‐use change. Successional control over microbial composition with forest recovery suggests strong links between above and belowground communities.     

Microbial soil respiration and its dependency on carbon inputs, soil temperature and moisture

This experiment was designed to study three determinant factors in decomposition patterns of soil organic matter (SOM): temperature, water and carbon (C) inputs. The study combined field measurements with soil lab incubations and ends with a modelling framework based on the results obtained. Soil respiration was periodically measured at an oak savanna woodland and a ponderosa pine plantation. Intact soils cores were collected at both ecosystems, including soils with most labile C burnt off, soils with some labile C gone and soils with fresh inputs of labile C. Two treatments, dry‐field condition and field capacity, were applied to an incubation that lasted 111 days. Short‐term temperature changes were applied to the soils periodically to quantify temperature responses. This was done to prevent confounding results associated with different pools of C that would result by exposing treatments chronically to different temperature regimes. This paper discusses the role of the above‐defined environmental factors on the variability of soil C dynamics. At the seasonal scale, temperature and water were, respectively, the main limiting factors controlling soil CO₂ efflux for the ponderosa pine and the oak savanna ecosystems. Spatial and seasonal variations in plant activity (root respiration and exudates production) exerted a strong influence over the seasonal and spatial variation of soil metabolic activity. Mean residence times of bulk SOM were significantly lower at the Nitrogen (N)‐rich deciduous savanna than at the N‐limited evergreen dominated pine ecosystem. At shorter time scales (daily), SOM decomposition was controlled primarily by temperature during wet periods and by the combined effect of water and temperature during dry periods. Secondary control was provided by the presence/absence of plant derived C inputs (exudation). Further analyses of SOM decomposition suggest that factors such as changes in the decomposer community, stress‐induced changes in the metabolic activity of decomposers or SOM stabilization patterns remain unresolved, but should also be considered in future SOM decomposition studies. Observations and confounding factors associated with SOM decomposition patterns and its temperature sensitivity are summarized in the modeling framework.     

Soil organic carbon content and composition of 130-year crop, pasture and forest land-use managements

Conversion of former agricultural land to grassland and forest ecosystems is a suggested option for mitigation of increased atmospheric CO₂. A Sharpsburg prairie loess soil (fine, smectitic, mesic Typic Argiudoll) provided treatments to study the impact of long‐term land use on soil organic carbon (SOC) content and composition for a 130‐year‐old cropped, pasture and forest comparison. The forest and pasture land use significantly retained more SOC, 46% and 25%, respectively, compared with cropped land use, and forest land use increased soil C content by 29% compared with the pasture. Organic C retained in the soils was a function of the soil N content (r=0.98, P<0.001) and the soil carbohydrate (CH) concentration (r=0.96, P<0.001). Statistical analyses found that soil aggregation processes increased as organic C content increased in the forest and pasture soils, but not in the cropped soil. SOC was composed of similar percentages of CHs (49%, 42% and 51%), amino acids (22%, 15% and 18%), lipids (2.3%, 2.3% and 2.9%) and unidentified C (21%, 29% and 27%), but differed for phenolic acids (PAs) (5.7%, 11.6% and 1.0%) for the pasture, forest and cropped soils, respectively. The results suggested that the majority of the surface soil C sequestered in the long‐term pasture and forest soils was identified as C of plant origin through the use of CH and PA biomarkers, although the increase in amino sugar concentration of microbial origin indicates a greater increase in microbial inputs in the three subsoils. The practice of permanent pastures and afforestation of agricultural land showed long‐term potential for potential mitigation of atmospheric CO₂.     

An invasive wetland grass primes deep soil carbon pools

Understanding the processes that control deep soil carbon (C) dynamics and accumulation is of key importance, given the relevance of soil organic matter (SOM) as a vast C pool and climate change buffer. Methodological constraints of measuring SOM decomposition in the field prevent the addressing of real‐time rhizosphere effects that regulate nutrient cycling and SOM decomposition. An invasive lineage of Phragmites australis roots deeper than native vegetation (Schoenoplectus americanus and Spartina patens) in coastal marshes of North America and has potential to dramatically alter C cycling and accumulation in these ecosystems. To evaluate the effect of deep rooting on SOM decomposition we designed a mesocosm experiment that differentiates between plant‐derived, surface SOM‐derived (0–40 cm, active root zone of native marsh vegetation), and deep SOM‐derived mineralization (40–80 cm, below active root zone of native vegetation). We found invasive P. australis allocated the highest proportion of roots in deeper soils, differing significantly from the native vegetation in root : shoot ratio and belowground biomass allocation. About half of the CO₂ produced came from plant tissue mineralization in invasive and native communities; the rest of the CO₂ was produced from SOM mineralization (priming). Under P. australis, 35% of the CO₂ was produced from deep SOM priming and 9% from surface SOM. In the native community, 9% was produced from deep SOM priming and 44% from surface SOM. SOM priming in the native community was proportional to belowground biomass, while P. australis showed much higher priming with less belowground biomass. If P. australis deep rooting favors the decomposition of deep‐buried SOM accumulated under native vegetation, P. australis invasion into a wetland could fundamentally change SOM dynamics and lead to the loss of the C pool that was previously sequestered at depth under the native vegetation, thereby altering the function of a wetland as a long‐term C sink.     

Half a century of Scots pine forest ecosystem monitoring reveals long‐term effects of atmospheric deposition and climate change

At two forest sites in Germany (Pfaffenwinkel, Pustert) stocked with mature Scots pine (Pinus sylvestris L.), we investigated changes of topsoil chemistry during the recent 40 years by soil inventories conducted on replicated control plots of fertilization experiments, allowing a statistical analysis. Additionally, we monitored the nutritional status of both stands from 1964 until 2019 and quantified stand growth during the monitoring period by repeated stand inventories. Moreover, we monitored climate variables (air temperature and precipitation) and calculated annual climatic water balances from 1991 to 2019. Atmospheric nitrogen (N) and sulfur (S) deposition between 1964 and 2019 was estimated for the period 1969–2019 by combining annual deposition measurements conducted in 1985–1987 and 2004 with long‐term deposition records from long‐term forest monitoring stations. We investigated interrelations between topsoil chemistry, stand nutrition, stand growth, deposition, and climate trends. At both sites, the onset of the new millennium was a turning point of important biogeochemical processes. Topsoil acidification turned into re‐alkalinization, soil organic matter (SOM) accumulation stopped, and likely turned into SOM depletion. In the new millennium, topsoil stocks of S and plant‐available phosphorus (P) as well as S and P concentrations in Scots pine foliage decreased substantially; yet, age‐referenced stand growth remained at levels far above those expected from yield table data. Tree P and S nutrition as well as climate change (increased temperature and drought stress) have replaced soil acidification as major future challenges for both forests. Understanding of P and S cycling and water fluxes in forest ecosystems, and consideration of these issues in forest management is important for successfully tackling the new challenges. Our study illustrates the importance of long‐term forest monitoring to identify slow, but substantial changes of forest biogeochemistry driven by natural and anthropogenic global change.     

Impact of Agricultural Land-use Change on Carbon Storage in Boreal Alaska

Climate warming is most pronounced at high latitudes, which could result in the intensification of the extensively cultivated areas in the boreal zone and could further enhance rates of forest clearing in the coming decades. Using paired forest‐field sampling and a chronosequence approach, we investigated the effect of conversion of boreal forest to agriculture on carbon (C) and nitrogen (N) dynamics in interior Alaska. Chronosequences showed large soil C losses during the first two decades following deforestation, with mean C stocks in agricultural soils being 44% or 8.3 kg m^?2 lower than C stocks in original forest soils. This suggests that soil C losses from land‐use change in the boreal region may be greater than those in other biomes. Analyses of changes in stable C isotopes and in quality of soil organic matter showed that organic C was lost from soils by combustion of cleared forest material, decomposition of organic matter and possibly erosion. Chronosequences indicated an increase in C storage during later decades after forest clearing, with 60‐year‐old grassland showing net ecosystem C gain of 2.1 kg m^?2 over the original forest. This increase in C stock resulted probably from a combination of large C inputs from belowground biomass and low C losses due to a small original forest soil C stock and low tillage frequency. Reductions in soil N stocks caused by land‐use change were smaller than reductions in C stocks (34% or 0.31 kg m^?2), resulting in lower C/N ratios in field compared with forest mineral soils, despite the occasional incorporation of high‐C forest‐floor material into field soils. Carbon mineralization per unit of mineralized N was considerably higher in forests than in fields, which could indicate that decomposition rates are more sensitive in forest soils than in field soils to inorganic N addition (e.g. by increased N deposition from the atmosphere). If forest conversion to agriculture becomes more widespread in the boreal region, the resulting C losses (51% or 11.2 kg m^?2 at the ecosystem level in this study) will induce a positive feedback to climatic warming and additional land‐use change. However, by selecting relatively C‐poor soils and by implementing management practices that preserve C, losses of C from soils can be reduced.     

Soil carbon and nitrogen cycling and storage throughout the soil profile in a sweetgum plantation after 11 years of CO2‐enrichment

Increased partitioning of carbon (C) to fine roots under elevated [CO₂], especially deep in the soil profile, could alter soil C and nitrogen (N) cycling in forests. After more than 11 years of free‐air CO₂ enrichment in a Liquidambar styraciflua L. (sweetgum) plantation in Oak Ridge, TN, USA, greater inputs of fine roots resulted in the incorporation of new C (i.e., C with a depleted δ¹³C) into root‐derived particulate organic matter (POM) pools to 90‐cm depth. Even though production in the sweetgum stand was limited by soil N availability, soil C and N contents were greater throughout the soil profile under elevated [CO₂] at the conclusion of the experiment. Greater C inputs from fine‐root detritus under elevated [CO₂] did not result in increased net N immobilization or C mineralization rates in long‐term laboratory incubations, possibly because microbial biomass was lower in the CO₂‐enriched plots. Furthermore, the δ¹³CO₂ of the C mineralized from the incubated soil closely tracked the δ¹³C of the labile POM pool in the elevated [CO₂] treatment, especially in shallower soil, and did not indicate significant priming of the decomposition of pre‐experiment soil organic matter (SOM). Although potential C mineralization rates were positively and linearly related to total SOM C content in the top 30 cm of soil, this relationship did not hold in deeper soil. Taken together with an increased mean residence time of C in deeper soil pools, these findings indicate that C inputs from relatively deep roots under elevated [CO₂] may increase the potential for long‐term soil C storage. However, C in deeper soil is likely to take many years to accrue to a significant fraction of total soil C given relatively smaller root inputs at depth. Expanded representation of biogeochemical cycling throughout the soil profile may improve model projections of future forest responses to rising atmospheric [CO₂].     

Soil functional resistance and stability are linked to different ecosystem properties

The functional resistance and resilience of soils from across the South Island of New Zealand were assessed. Soils were collected from under varying land‐uses (pasture, pine forest, native forest) at each of four different locations (Hokitika, Craigieburn, Eyrewell, Orton Bradley Park). Soil function was measured using carbon utilization profiles (MicroResp technique), and responses to freeze‐thaw disturbance assessed in a multivariate approach. Resistance was defined as the amount of change in functional profiles (multivariate distance) before, and then 10 h after, disturbance. Resilience was defined as the stability in ecosystem function over time (6 sample points spanning 17 days after initial freeze‐thaw disturbance). The functional resistance of soils was not linked to land‐use nor sampling location (permanova P > 0.05) but was negatively correlated with soil Olsen‐P levels (biological‐environmental matching (BIO‐ENV test); ρ = 0.604, P = 0.04). Secondary factors associated with soil organic matter status were associated with functional resistance in soil of low Olsen‐P. This was explicitly tested by repeating the experiment in soils collected from a long‐term P fertilizer management trial; functional resistance remained linked to the underlying P status of the soils (P = 0.002). The functional stability of soil (post‐disturbance) was associated with long‐term rainfall (canonical analysis on principal coordinates – CAP analysis; P = 0.039); soils from high rainfall sites were more stable after disturbance. The results show that variables linked to functional resistance and resilience in soils are different. Furthermore, resilience was not correlated with resistance, or with measures of functional diversity (e.g. evenness of substrate mineralization). Alteration of the P status of soils is likely to impact on the capacity of soils to rapidly respond to disturbance, whereas drivers of climate, such as global warming, may impact soil functional resilience.     

Deep ploughing increases agricultural soil organic matter stocks

Subsoils play an important role within the global C cycle, since they have high soil organic carbon (SOC) storage capacity due to generally low SOC concentrations. However, measures for enhancing SOC storage commonly focus on topsoils. This study assessed the long‐term storage and stability of SOC in topsoils buried in arable subsoils by deep ploughing, a globally applied method for breaking up hard pans and improving soil structure to optimize crop growing conditions. One effect of deep ploughing is translocation of SOC formed near the surface into the subsoil, with concomitant mixing of SOC‐poor subsoil material into the ‘new’ topsoil. Deep‐ploughed croplands represent unique long‐term in situ incubations of SOC‐rich material in subsoils. In this study, we sampled five loamy and five sandy soils that were ploughed to 55–90 cm depth 35–50 years ago. Adjacent, similarly managed but conventionally ploughed subplots were sampled as reference. The deep‐ploughed soils contained on average 42 ± 13% more SOC than the reference subplots. On average, 45 years after deep ploughing, the ‘new’ topsoil still contained 15% less SOC than the reference topsoil, indicating long‐term SOC accumulation potential in the topsoil. In vitro incubation experiments on the buried sandy soils revealed 63 ± 6% lower potential SOC mineralisation rates and also 67 ± 2% lower SOC mineralisation per unit SOC in the buried topsoils than in the reference topsoils. Wider C/N ratio in the buried sandy topsoils than in the reference topsoils indicates that deep ploughing preserved SOC. The SOC mineralisation per unit SOC in the buried loamy topsoils was not significantly different from that in the reference topsoils. However, 56 ± 4% of the initial SOC was preserved in the buried topsoils. It can be concluded that deep ploughing contributes to SOC sequestration by enlarging the storage space for SOC‐rich material.     

Long-term impacts of anthropogenic perturbations on dynamics and speciation of organic carbon in tropical forest and subtropical grassland ecosystems

Anthropogenic perturbations have profoundly modified the Earth's biogeochemical cycles, the most prominent of these changes being manifested by global carbon (C) cycling. We investigated long‐term effects of human‐induced land‐use and land‐cover changes from native tropical forest (Kenya) and subtropical grassland (South Africa) ecosystems to agriculture on the dynamics and structural composition of soil organic C (SOC) using elemental analysis and integrated ¹³C nuclear magnetic resonance (NMR), near‐edge X‐ray absorption fine structure (NEXAFS) and synchrotron‐based Fourier transform infrared‐attenuated total reflectance (Sr‐FTIR‐ATR) spectroscopy. Anthropogenic interventions led to the depletion of 76%, 86% and 67% of the total SOC; and 77%, 85% and 66% of the N concentrations from the surface soils of Nandi, Kakamega and the South African sites, respectively, over a period of up to 100 years. Significant proportions of the total SOC (46–73%) and N (37–73%) losses occurred during the first 4 years of conversion indicating that these forest‐ and grassland‐derived soils contain large amounts of labile soil organic matter (SOM), potentially vulnerable to degradation upon human‐induced land‐use and land‐cover changes. Anthropogenic perturbations altered not only the C sink capacity of these soils, but also the functional group composition and dynamics of SOC with time, rendering structural composition of the resultant organic matter in the agricultural soils to be considerably different from the SOM under natural forest and grassland ecosystems. These molecular level compositional changes were manifested: (i) by the continued degradation of O‐alkyl and acetal‐C structures found in carbohydrate and holocellulose biomolecules, some labile aliphatic‐C functionalities, (ii) by side‐chain oxidation of phenylpropane units of lignin and (iii) by the continued aromatization and aliphatization of the humic fractions possibly through selective accumulation of recalcitrant H and C substituted aryl‐C and aliphatic‐C components such as (poly)‐methylene units, respectively. These changes appeared as early as the fourth year after transition, and their intensity increased with duration of cultivation until a new quasi‐equilibrium of SOC was approached at about 20 years after conversion. However, subtle but persistent changes in molecular structures of the resultant SOM continued long after (up to 100 years) a steady state for SOC was approached. These molecular level changes in the inherent structural composition of SOC may exert considerable influence on biogeochemical cycling of C and bioavailability of essential nutrients present in association with SOM, and may significantly affect the sustainability of agriculture as well as potentials of the soils to sequester C in these tropical and subtropical highland agroecosystems.     

Accumulation of nitrogen and microbial residues during 2000 years of rice paddy and non‐paddy soil development in the Yangtze River Delta,China

Lowland rice paddy soils may accumulate significant amounts of organic matter. Our aim was to investigate the role of prolonged paddy management on the nitrogen (N) status of the soils, and to elucidate the contribution of bacteria and fungi to long‐term N accumulation processes. For this purpose, we sampled a chronosequence of 0–2000 years of rice cropping with adjacent non‐paddy systems in the Bay of Hangzhou, China. The samples were analyzed for bulk density, total, mineral and microbial N (N_mic), and amino sugars as markers for microbial residues. The results showed that during the first 100 years of land embankment, both paddy and non‐paddy soils accumulated N at a rate of up to 61 and 77 kg ha^?1 per annum, reaching steady‐state conditions after 110–172 years, respectively. Final N stocks in paddy fields exceeded those of the non‐paddies by a factor of 1.3. The contribution of amino sugars to total N increased to a maximum of 34 g N kg^?1 N in both land‐use systems, highlighting a significant accumulation of N in microbial residues of the surface soils. Correspondingly, the ratio of N_mic to microbial residue‐N decreased to a constant value. In the paddy subsoils, we found that bacterial residues particularly contributed to the pool of microbial residue‐N. Nevertheless, the absolute contents of amino sugars in paddy subsoils decreased during the last 1700 years of the chronosequence. We conclude that under paddy cultivation, soil microorganisms may accumulate parts of this N in their residues despite low overall N availability. However, this N accumulation is limited to initial stages of paddy soil development and restricted to the surface horizons, thus challenging its sustainability with future land‐use changes.     

Roots and fungi accelerate carbon and nitrogen cycling in forests exposed to elevated CO2

A common finding in multiple CO(2) enrichment experiments in forests is the lack of soil carbon (C) accumulation owing to microbial priming of 'old' soil organic matter (SOM). However, soil C losses may also result from the accelerated turnover of 'young' microbial tissues that are rich in nitrogen (N) relative to bulk SOM. We measured root-induced changes in soil C dynamics in a pine forest exposed to elevated CO(2) and N enrichment by combining stable isotope analyses, molecular characterisations of SOM and microbial assays. We find strong evidence that the accelerated turnover of root-derived C under elevated CO(2) is sufficient in magnitude to offset increased belowground inputs. In addition, the C losses were associated with accelerated N cycling, suggesting that trees exposed to elevated CO(2) not only enhance N availability by stimulating microbial decomposition of SOM via priming but also increase the rate at which N cycles through microbial pools.     

Shifts in priming partly explain impacts of long‐term nitrogen input in different chemical forms on soil organic carbon storage

Input of labile organic carbon can enhance decomposition of extant soil organic carbon (SOC) through priming. We hypothesized that long‐term nitrogen (N) input in different chemical forms alters SOC pools by altering priming effects associated with N‐mediated changes in plants and soil microbes. The hypothesis was tested by integrating field experimental data of plants, soil microbes and two incubation experiments with soils that had experienced 10 years of N enrichment with three chemical forms (ammonium, nitrate and both ammonium and nitrate) in an alpine meadow on the Tibetan Plateau. Incubations with glucose–¹³C addition at three rates were used to quantify effects of exogenous organic carbon input on the priming of SOC. Incubations with microbial inocula extracted from soils that had experienced different long‐term N treatments were conducted to detect effects of N‐mediated changes in soil microbes on priming effects. We found strong evidence and a mechanistic explanation for alteration of SOC pools following 10 years of N enrichment with different chemical forms. We detected significant negative priming effects both in soils collected from ammonium‐addition plots and in sterilized soils inoculated with soil microbes extracted from ammonium‐addition plots. In contrast, significant positive priming effects were found both in soils collected from nitrate‐addition plots and in sterilized soils inoculated with soil microbes extracted from nitrate‐addition plots. Meanwhile, the abundance and richness of graminoids were higher and the abundance of soil microbes was lower in ammonium‐addition than in nitrate‐addition plots. Our findings provide evidence that shifts toward higher graminoid abundance and changes in soil microbial abundance mediated by N chemical forms are key drivers for priming effects and SOC pool changes, thereby linking human interference with the N cycle to climate change.     

Conventional intensive logging promotes loss of organic carbon from the mineral soil

There are few data, but diametrically opposed opinions, about the impacts of forest logging on soil organic carbon (SOC). Reviews and research articles conclude either that there is no effect, or show contradictory effects. Given that SOC is a substantial store of potential greenhouse gasses and forest logging and harvesting is routine, resolution is important. We review forest logging SOC studies and provide an overarching conceptual explanation for their findings. The literature can be separated into short‐term empirical studies, longer‐term empirical studies and long‐term modelling. All modelling that includes major aboveground and belowground biomass pools shows a long‐term (i.e. ≥300 years) decrease in SOC when a primary forest is logged and then subjected to harvesting cycles. The empirical longer‐term studies indicate likewise. With successive harvests the net emission accumulates but is only statistically perceptible after centuries. Short‐term SOC flux varies around zero. The long‐term drop in SOC in the mineral soil is driven by the biomass drop from the primary forest level but takes time to adjust to the new temporal average biomass. We show agreement between secondary forest SOC stocks derived purely from biomass information and stocks derived from complex forest harvest modelling. Thus, conclusions that conventional harvests do not deplete SOC in the mineral soil have been a function of their short time frames. Forest managers, climate change modellers and environmental policymakers need to assume a long‐term net transfer of SOC from the mineral soil to the atmosphere when primary forests are logged and then undergo harvest cycles. However, from a greenhouse accounting perspective, forest SOC is not the entire story. Forest wood products that ultimately reach landfill, and some portion of which produces some soil‐like material there rather than in the forest, could possibly help attenuate the forest SOC emission by adding to a carbon pool in landfill.