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1.
用晶体学方法分别研究了TCS与AMP ,Ado ,tub ,CMP的相互作用 .确证了TCS专一性识别Ade,嘧啶环不识别 ,而用TCS与单核苷酸作用 ,磷酸根存在与否并不重要 ;R1 6 3胍基的H+被Ade的N3共享 ,而不是N7接受质子 .丰富了TCS与AMP相互作用的N 糖苷酶作用机制模型 .此模型也应该适用于RIPs与AMP的相互作用 ,反映了RIP与rRNA作用的基本模式 ,但是 ,RIP与rRNA的作用会更复杂 ,要全面了解RIPs对rRNA的识别与催化 ,还应该探索RIP与rRNA中包括GAGA茎环区底物类似物复合物的三维结构 .  相似文献   

2.
An isoform of trichosanthin(TCS), neo-trichosanthin(n-TCS), as well as its site-directed mutant-Y70A neo-trichosanthin, has been cloned and expressed as recombinant protein. Crystals of n-TCS and Y70A n-TCS were grown by handing drop vapor diffusion technique. X-ray diffraction data were collected to 0.20 nm and 0.205 nm separately on a Mar Research IP. The structures were determined by the difference Fourier method. The final R factor are 0.183 and 0.185 respectively. The r.m.s. deviations of bond length are 0.0016 nm and 0.0014 nm, the r.m.s. deviations of bond angle are 2.930° and 2.732° respectively, Although there are 11 amino acids difference between n-TCS and TCS, all those residues are not situated in the active pocket. In addition, most of those amino acid replacements are conservative substitutions. In comparison with the structure of TCS, the hydrogen bonds form between the main chains of those 11 residues in n-TCS and their neighboring residues at the same positions of TCS 11 residues within the secondary structures remain unaltered. Therefore the overall structure of n-TCS is very similar to TCS. The crystal of Y70A n-TCS was allowed to soak in buffer containing 5'-adenosine monophosphate (5'AMP) (10g/l) prior to data collection. No electron density corresponding to adenine can be detected around the active pocket. Furthermore, no adenine can be detected after incubation of Y70A n-TCS with 5'AMP. Those results suggest that Tyr70 is crucial to n-TCS and TCS for substrate recognition, binding and perhaps hydrolysis of N-glycoside bond.  相似文献   

3.
【背景】MIO(Methylidene-imidazol-5-one)依赖型酶中,催化因子Tyr所在Loop(Tyr78-loop)的灵活性显著影响酶学性质。【目的】探讨Tyr78-loop对鱼腥藻来源苯丙氨酸脱氨酶酶活的影响,以提高其反应活性。【方法】将该酶的Tyr78-loop进行分子改造,筛选出酶活提高的突变体,并对突变体的酶学性质进行研究。【结果】突变体S73N、E95V、E95K和S73N/E95K在37°C、pH 8.5下比活分别比原酶提高了34%、30%、18%和35%。蛋白三维结构模拟推测在突变体S73N、E95V和E95K中,位于α螺旋与Tyr78-loop交界处的Asn73、Val95和Lys95与附近氨基酸的氢键作用力数目减少,一定程度上增加了Tyr78-loop的柔性。【结论】Ser73位和Glu95位氨基酸的突变增加了Tyr78-loop的灵活性,提高了苯丙氨酸脱氨酶的酶活。  相似文献   

4.
培养了R2 2LTCS的单晶 ,在SIEMENSX 2 0 0B面探测器系统上收集了一套 0 .1 91nm分辨率的X射线衍射数据 .数据处理用XENGEN程序系统完成 ,数据使用到 0 .2 2 0nm .用同晶差值Fourier法解析了突变体的晶体结构 ,经XPLOR程序修正得到了R2 2LTCS的分子结构 ,并找到了 6 1个水分子 ,最后R因子为 0 .1 82 ,键长和键角RMS偏差分别为 0 .0 0 1 3nm和 2 .770°.在R2 2LTCS分子中 ,与A1 6 1 ,A1 6 2主链氧成氢键的 2 2位精氨酸被亮氨酸取代后形成的空穴被水分子 2 91和 2 96所占据 ,与 2 2位Arg形成盐键相互作用的 1 6 8位Glu的侧链与TCS相比 ,转动了大约 5 0° ,羧基折向相反方向 ,并通过水分子 2 93与 1 6 5位的Lys侧链氨基桥连 .这些水参与的氢键网络部分代替了原R2 2的作用 .还讨论了二级结构间的保守氢键和盐键对活性口袋构象的影响  相似文献   

5.
以~(32)P(Tyr)-Poly Glu,Tyr(4:1)为底物,用于研究小鼠再生肝胞浆磷酸酪氨酸蛋白磷酸酶(PTPP)的分离纯化和性质。再生肝胞浆经60%饱和度硫酸铵盐析,二次DEAE纤维素层析,Sephadex G-200柱层析和Poly Glu,Tyr-Sepha-rose 4B亲和层析后,得到的PTPP分子量为67000,纯度提高1123倍,活性回收率为28%,对~(32)P(Tyr)-Poly Glu,Tyr有很高的活力,对~(32)P(Ser/Thr)-Casein(酪蛋白)和PNPP(对硝基苯酚磷酸盐)没有作用,其最适pH为6.8~7.1,对热不稳定。EDTA对酶有激活作用,Zn~(2+)、PNPP、P-Tyr、多胺化合物、焦磷酸根、钼酸根、柠檬酸根对酶有明显的抑制作用。酶对Na_3VO_4不敏感。碱性蛋白质组蛋白、鱼精蛋白对酶活力有抑制作用,酸性蛋白质酪蛋白和酸性多糖物质肝素对酶活力有激活作用,且后者能减弱前者的抑制作用。  相似文献   

6.
用悬滴汽相扩散法得到了R163H n-TCS和R613Q n-TCS的晶体, 在Mar-Research面探测器系统上分别收集了0.200和0.205nm分辨率的X-射线衍射数据。采用同晶差值傅立叶法解析结构, 用X-PLOR软件包进行修正, 最后的晶体学R因子分别为0.184和0.185, 键长偏差分别为0.0013nm和0.0014nm, 键角偏差分别为2.590°和2.815°。结构测定显示R163H n-TCS和R163Q n-TCS与n-TCS的主链结构无较大变化, 活性口袋区的结构和氢键体系发生了明显变化。生化分析表明R163H n-TCS具有糖苷酶活性,R163Q n-TCS没有糖苷酶活性。这说明,第163位侧链的H+对n-TCS发挥N-糖苷酶活性至关重要。  相似文献   

7.
A型肉毒神经毒素的轻链(BoNT/A LC)是一种锌依赖性的金属内肽酶.通过X射线分析其结构并结合一些文献报道表明,轻链上的Arg362和Tyr365直接参与了酶的催化作用,而Glu350则处于其活性位点的中心位置.采用定点突变技术,对编码这3个关键性的氨基酸位点的碱基进行突变(Arg362Ala、Tyr365Phe、Glu350Ala),获得了BoNT/A LC突变体.突变体蛋白与BoNT/A的底物蛋白SNAP-25进行切割反应,结果表明,未经突变的BoNT/A轻链蛋白能够特异性地识别SNAP-25蛋白上的Q197-R198位点,而突变体蛋白则完全无法识别该位点,不具有金属内肽酶活性,成功地去除了肉毒神经毒素的毒力,为下一步的全长肉毒神经毒素重组疫苗的研究打下了基础.  相似文献   

8.
目的测定睡眠剥夺大鼠脑组织氨基酸类神经递质的含量。方法复制药物诱导失眠动物模型、平台水环境诱导失眠动物模型、刺激诱导失眠动物模型,以Agilent 1100荧光检测器高效液相系统为检测工具,Agilent ZORBAX SB-Aq(250 mm×4.6 mm,5μm)为色谱柱,柱温25℃,激发波长λex=357 nm,发射波长λem=455 nm,甲醇-50 mmoL/L醋酸钠缓冲液(pH=6.5)为流动相,采取梯度洗脱,测定正常组及模型组大鼠脑组织中谷氨酸(Glu)、甘氨酸(Gly)、γ-氨基丁酸(γ-GABA)、牛磺酸(Tau)的含量。结果谷氨酸、甘氨酸、γ-氨基丁酸、牛磺酸分别在10.06~0.0503、10.13~0.0506、10.05~0.0502、10.03~0.0501μg/mL范围内,其浓度与峰面积呈良好的线性关系(r分别为0.99995、0.99995、0.99985、0.99990)。测得药物诱导失眠大鼠脑组织中Glu、Gly、Tau、γ-GABA的含量为(0.2042±0.0145)、(0.0086±0.0005)、(0.0919±0.0024)、(0.0421±0.0011)μg;平台水环境诱导失眠大鼠脑组织中Glu、Gly、Tau、γ-GABA的含量为(0.2144±0.0159)、(0.0085±0.0004)、(0.0966±0.0035)、(0.0433±0.0012)μg;刺激诱导失眠大鼠脑组织中Glu、Gly、Tau、γ-GABA的含量为(0.1818±0.0043)、(0.0084±0.0005)、(0.0824±0.0033)、(0.0414±0.0018)μg;正常大鼠脑组织中Glu、Gly、Tau、γ-GABA的含量为(0.1744±0.0038)、(0.0085±0.0004)、(0.0791±0.0022)、(0.0406±0.0012)μg。结论本实验建立的方法能满足同时测定大鼠脑组织中谷氨酸、甘氨酸、γ-氨基丁酸、牛磺酸的含量测定的需要,Glu、Tau、γ-GABA与失眠可能存在一定的量效关系,三种失眠动物模型均能较好的反映出脑内氨基酸类神经递质的变化。  相似文献   

9.
将人胰岛素原突变体(A4Glu→Leu)基因重组到pBV220表达载体上,在E.coli系统中得到高效表达,表达产物经SephadexG-50柱层析分离以及胰蛋白酶和羧肽酶B的酶促转化等步骤,可得到纯的人胰岛素突变体(A4Glu→Leu),其氨基酸组成与预期值相符,其受体结合活性及生物活性与标准猪胰岛素的基本相同.  相似文献   

10.
苯丙酮尿症(PKU)患者血清的氨基酸定量分析(英文)   总被引:1,自引:0,他引:1  
目的 PKU患者血清中游离氨基酸组成及定量分析。方法 应用日立835-50型氨基酸自动分析仪进行测定。结果 七例PKU患者血清中Phe患者血清中Phe (1.5480.080) 和Glu (0.4680.098) 的含量分别为正常组Phe (0.1070.014) 和Glu (0.1330.046) 的15倍和3.5倍,差异非常显著 (p<0.001)。Arg (0.0330.046) 为正常组 (0.1130.025) 的1/4 (p<0.001)。但患者血清中Tyr (0.0500.016) 与正常值 (0.0470.008) 相比则无显著性差异 (p>0.05)。结论 用氨基酸分析方法可准确测定PKU血清中各种氨基酸含量,为PKU诊断提供了可靠的数据: 并发现除Phe外,还有Arg的异常降低及Glu的异常升高,其发生机理及临床意义有待进一步研究。  相似文献   

11.
用浸泡法得到了(E160A)天花粉蛋白(trichosanthin, TCS),(E160D)TCS与Ade 和(E160A)TCS与FMP复合物的晶体.在Mar Research 面探测器系统上分别收集了0.20 nm ,0.19nm 和0.205 nm 分辨率的X 射线衍射数据,数据处理用Mar Scale 程序系统完成.用同晶差值Fourier法解析了(E160A)TCS-Ade,(E160D)TCS-Ade 和(E160A)TCS-FMP的晶体结构,结构修正利用X-PLOR程序,修正结果,晶体学R因子分别为0.166,0.176,0.179.键长和键角的RMS偏差分别为0.0010 nm 和2.503°,0.0013 nm 和2.665°,0.0012 nm 和2.676°.在这三个结构中均未见到Glu189侧链方向的改变.Ade 或FMP仍结合在N-糖苷酶活性口袋之中,它夹在Tyr70和Tyr111两个侧链环之间,与Tyr70环近乎平行.这一结果表明:TCS中的Glu160分别突变成Ala 和Asp,仍能与AMP发生N-糖苷酶反应,但是活性降低了一些.可见Glu160对TCS与AMP的作用是重要的,但不是必要的.  相似文献   

12.
(E160A)和(E160D)天花粉蛋白两种突变体晶体结构研究   总被引:1,自引:1,他引:0  
培养了(E160A)TCS和(E160D)TCS的单晶。在MARResearch面探测器系统上分别收集了0.193nm和0.20nm分辨率的X射线衍射数据。数据处理用MARSCALE程序系统完成。用同晶差值Fourier法解析了突变体的晶体结构,结构修正利用X-PLOR程序。修正结果,晶体学R因子分别为0.175,0.179,键长和键角的RMS偏差分别为0.0011nm和2.457°,0.0013nm和2.675°。在这两个突变体的结构中均未见到Glu189侧链方向的改变。通过对(E160A)TCS和(E160D)TCS的结构比较,说明(E160D)TCS活性低于(E160A)TCS的原因:这可能是由于在(E160D)TCS中Tyr111和Tyr70的侧链都具有较大的运动性,使它们与腺嘌呤碱基的芳香堆垛作用减弱,从而导致活性的降低  相似文献   

13.
Guo Q  Zhou W  Too HM  Li J  Liu Y  Bartlam M  Dong Y  Wong KB  Shaw PC  Rao Z 《Protein engineering》2003,16(6):391-396
Trichosanthin (TCS) is a type I ribosome-inactivating protein (RIP) which possesses rRNA N-glycosidase activity. In recent years, its immunomodulatory, anti-tumor and anti-HIV properties have been revealed. Here we report the crystal structures of several E85 mutant TCS complexes with adenosine-5'-monophosphate (AMP) and adenine. In E85Q TCS/AMP and E85A TCS/AMP, near the active site of the molecule and parallel to the aromatic ring of Tyr70, an AMP molecule is bound to the mutant without being hydrolyzed. In the E85R TCS/adenine complex, the hydrolyzed product adenine is located in the active pocket where it occupies a position similar to that in the TCS/NADPH complex. Significantly, AMP is bound in a position different to that of adenine. In comparison with these structures, we suggest that there are at least two subsites in the active site of TCS, one for initial substrate recognition as revealed by the AMP site and another for catalysis as represented by the NADPH site. Based on these complex structures, the function of residue 85 and the mechanism of catalysis are proposed.  相似文献   

14.
Prolyl aminopeptidase from Serratia marcescens hydrolyzed x-beta-naphthylamides (x=prolyl, alanyl, sarcosinyl, L-alpha-aminobutylyl, and norvalyl), which suggested that the enzyme has a pocket for a five-member ring. Based on the substrate specificity, novel inhibitors of Pro, Ala, and Sar having 2-tert-butyl-[1,3,4]oxadiazole (TBODA) were synthesized. The K(i) value of Pro-TBODA, Ala-TBODA, and Sar-TBODA was 0.5 microM, 1.6 microM, and 12mM, respectively. The crystal structure of enzyme-Pro-TBODA complex was determined. Pro-TBODA was located at the active site. Four electrostatic interactions were located between the enzyme and the amino group of Pro inhibitors (Glu204:0E1-N:Inh, Glu204:0E2-N:Inh, Glu232:0E1-N:Inh, and Gly46:O-N:Inh), and the residue of the inhibitors was inserted into the hydrophobic pocket composed of Phe139, Leu141, Leu146, Tyr149, Tyr150, and Phe236. The roles of Phe139, Tyr149, and Phe236 in the hydrophobic pocket and Glu204 and Glu232 in the electrostatic interactions were confirmed by site-directed mutagenesis, which indicated that the molecular recognition of proline is achieved through four electrostatic interactions and an insertion in the hydrophobic pocket of the enzyme.  相似文献   

15.
To select residues in coagulation factor XIa (FXIa) potentially important for substrate and inhibitor interactions, we examined the crystal structure of the complex between the catalytic domain of FXIa and the Kunitz protease inhibitor (KPI) domain of a physiologically relevant FXIa inhibitor, protease nexin 2 (PN2). Six FXIa catalytic domain residues (Glu(98), Tyr(143), Ile(151), Arg(3704), Lys(192), and Tyr(5901)) were subjected to mutational analysis to investigate the molecular interactions between FXIa and the small synthetic substrate (S-2366), the macromolecular substrate (factor IX (FIX)) and inhibitor PN2KPI. Analysis of all six Ala mutants demonstrated normal K(m) values for S-2366 hydrolysis, indicating normal substrate binding compared with plasma FXIa; however, all except E98A and K192A had impaired values of k(cat) for S-2366 hydrolysis. All six Ala mutants displayed deficient k(cat) values for FIX hydrolysis, and all were inhibited by PN2KPI with normal values of K(i) except for K192A, and Y5901A, which displayed increased values of K(i). The integrity of the S1 binding site residue, Asp(189), utilizing p-aminobenzamidine, was intact for all FXIa mutants. Thus, whereas all six residues are essential for catalysis of the macromolecular substrate (FIX), only four (Tyr(143), Ile(151), Arg(3704), and Tyr(5901)) are important for S-2366 hydrolysis; Glu(98) and Lys(192) are essential for FIX but not S-2366 hydrolysis; and Lys(192) and Tyr(5901) are required for both inhibitor and macromolecular substrate interactions.  相似文献   

16.
The IRS-1 PH and PTB domains are essential for insulin-stimulated IRS-1 Tyr phosphorylation and insulin signaling, while Ser/Thr phosphorylation of IRS-1 disrupts these signaling events. To investigate consensus PKC phosphorylation sites in the PH-PTB domains of human IRS-1, we changed Ser24, Ser58, and Thr191 to Ala (3A) or Glu (3E), to block or mimic phosphorylation, respectively. The 3A mutant abrogated the inhibitory effect of PKCdelta on insulin-stimulated IRS-1 Tyr phosphorylation, while reductions in insulin-stimulated IRS-1 Tyr phosphorylation, cellular proliferation, and Akt activation were observed with the 3E mutant. When single Glu mutants were tested, the Ser24 to Glu mutant had the greatest inhibitory effect on insulin-stimulated IRS-1 Tyr phosphorylation. PKCdelta-mediated IRS-1 Ser24 phosphorylation was confirmed in cells with PKCdelta catalytic domain mutants and by an RNAi method. Mechanistic studies revealed that IRS-1 with Ala and Glu point mutations at Ser24 impaired phosphatidylinositol-4,5-bisphosphate binding. In summary, our data are consistent with the hypothesis that Ser24 is a negative regulatory phosphorylation site in IRS-1.  相似文献   

17.
The amino terminal domain of enzyme I (residues 1-258 + Arg; EIN) and full length enzyme I (575 residues; EI) harboring active-site mutations (H189E, expected to have properties of phosphorylated forms, and H189A) have been produced by protein bioengineering. Differential scanning calorimetry (DSC) and temperature-induced changes in ellipticity at 222 nm for monomeric wild-type and mutant EIN proteins indicate two-state unfolding. For EIN proteins in 10 mM K-phosphate (and 100 mM KCl) at pH 7.5, deltaH approximately 140 +/- 10 (160) kcal mol(-1) and deltaCp approximately 2.7 (3.3) kcal K(-1) mol(-1). Transition temperatures (Tm) are 57 (59), 55 (58), and 53 (56) degrees C for wild-type, H189A, and H189E forms of EIN, respectively. The order of conformational stability for dephospho-His189, phospho-His189, and H189 substitutions of EIN at pH 7.5 is: His > Ala > Glu > His-PO3(2-) due to differences in conformational entropy. Although H189E mutants have decreased Tm values for overall unfolding the amino terminal domain, a small segment of structure (3 to 12%) is stabilized (Tm approximately 66-68 degrees C). This possibly arises from an ion pair interaction between the gamma-carboxyl of Glu189 and the epsilon-amino group of Lys69 in the docking region for the histidine-containing phosphocarrier protein HPr. However, the binding of HPr to wild-type and active-site mutants of EIN and EI is temperature-independent (entropically controlled) with about the same affinity constant at pH 7.5: K(A)' = 3 +/- 1 x 10(5) M(-1) for EIN and approximately 1.2 x 10(5) M(-1) for EI.  相似文献   

18.
Synthetic copolymers containing tyrosine residues were used to characterize the substrate specificity of the insulin receptor kinase and compare it to tyrosine kinases stimulated by epidermal growth factor, insulin-like growth factor-1 and phorbol ester. In partially purified receptor preparations from eight different tissues insulin best stimulated (highest V) phosphorylation of a random copolymer composed of glutamic and tyrosine residues at a 4:1 ratio (Glu/Tyr, 4:1). The insulin-stimulated phosphorylation of this polymer was highly significant also in receptor preparations from fresh human monocytes, where insulin binding and autophosphorylation were difficult to detect. Other tyrosine-containing polymers Ala/Glu/Lys/Tyr (6:2:5:1) and Glu/Ala/Tyr (6:3:1) were also phosphorylated by the insulin-stimulated kinase but to a lower extent. A tyrosine kinase stimulated by insulin-like growth factor-1, and one stimulated by phorbol ester also best phosphorylated the polymer Glu/Tyr (4:1). The three kinases differed only in their capability to phosphorylate Glu/Ala/Tyr (6:3:1) or Ala/Glu/Lys/Tyr (6:2:5:1). Glu/Tyr (4:1) was a poor substrate for the epidermal growth factor receptor kinase which best phosphorylated the polymer Glu/Ala/Tyr (6:3:1). Three additional polymers: Glu/Tyr (1:1), Glu/Ala/Tyr (1:1:1), and Lys/Tyr (1:1) failed to serve as substrates for all four tyrosine kinases tested. Taken together these findings suggest that. Hormone-sensitive tyrosine kinases have similar yet distinct substrate specificity and are likely to phosphorylate their native substrates on tyrosines adjacent to acidic (glutamic) residues. Tyrosine-containing polymer substrates are highly sensitive and convenient tools to study (hormone-sensitive) tyrosine kinases whose native substrates are unknown or present at low concentrations.  相似文献   

19.
天花粉蛋白(Trichosanthin,TCS)的一个亚型,neoTrichosanthin(n-TCS),及其突变体Y70An-TCS被克隆和表达为重组蛋白。用悬滴汽相扩散法得到n-TCS和Y70An-TCS的晶体。在MarResearch面探测器系统上分别收集了0.20nm和0.205nm分辨率的X射线衍射数据。用同晶差值傅立叶法解析了结构。最后晶体学R因子分别为0.183和0.184。键长的  相似文献   

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