Natural bond orbital approach to the transmission of substituent effect through the fulvene and benzene ring systems

Electronic structure of 22 monosubstituted derivatives of benzene and exocyclically substituted fulvene with substituents: B(OH)₂, BH₂, CCH, CF₃, CH₃, CHCH₂, CHO, Cl, CMe₃, CN, COCH₃, CONH₂, COOH, F, NH₂, NMe₂, NO, NO₂, OCH₃, OH, SiH₃, SiMe₃ were studied theoretically by means of Natural Bond Orbital analysis. It is shown, that sum of π-electron population of carbon atoms of the fulvene and benzene rings, pEDA(F) and pEDA(B), respectively correlate well with Hammett substituent constants s_p⁺ \sigma_{\rm{p}}^{+} and aromaticity index NICS. The substituent effect acting on pi-electron occupation at carbon atoms of the fulvene ring is significantly stronger than in the case of benzene. Electron occupations of ring carbon atoms (except C1) in fulvene plotted against each other give linear regressions with high correlation coefficients. The same is true for ortho- and para-carbon atoms in benzene. Positive slopes of the regressions indicate similar for fulvene and benzene kind of substituent effect – mostly resonance in nature. Only the regressions of occupation at the carbon atom in meta- position of benzene against ortho- and para-positions gives negative slopes and low correlation coefficients.     

Synthesis and application of the first planar chiral strong Brønsted acid organocatalysts

The synthesis of planar chiral strong Brønsted acid organocatalysts derived from [2.2]paracyclophane is described. Resolution was accomplished according to a modified protocol involving pseudo‐ortho‐substituted [2.2]paracyclophane‐based sulfoxides for the synthesis of three new sulfonic acids. The first planar chiral phosphoric acid diester was obtained from the corresponding phenyl‐substituted diol derived from enantiopure 4‐bromo‐12‐hydroxy [2.2]paracyclophane. These new classes of catalysts were tested in an enantioselective Friedel–Crafts reaction as well as in a direct asymmetric Mannich reaction and gave yields of up to 93% and ee‐values of up to 38%. Chirality, 2012. © 2012 Wiley Periodicals, Inc.     

How lithium atoms affect the first hyperpolarizability of BN edge-doped graphene

How do lithium atoms affect the first hyperpolarizability (β₀) of boron–nitrogen (BN) edge-doped graphene. In this work, using pentacene as graphene model, Li_n@BN-1 edge-doped pentacene and Li_n@BN-2 edge-doped pentacene (n?=?1, 5) were designed to study this problem. First, two models (BN-1 edge-doped pentacene, and BN-2 edge-doped pentacene ) were formed by doping the BN into the pentacene with different order, and then Li@BN-1 edge-doped pentacene and Li@ BN-2 edge-doped pentacene were obtained by substituting the H atom in BN edge-doped pentacene with a Li atom. The results show that the first hyperpolarizabilities of BN-1 edge-doped pentacene and Li@BN-1 edge-doped pentacene were 4059 a.u. and 6249 a.u., respectively; the first hyperpolarizabilities of BN-2 edge-doped pentacene and Li@BN-2 edge-doped pentacene were 2491 a.u. and 4265 a.u., respectively. The results indicate that the effect of Li substitution is to greatly increase the β₀ value. To further enhance the first hyperpolarizability, Li₅@ BN-1 edge-doped pentacene and Li₅@BN-2 edge-doped pentacene were designed, and were found to exhibit considerably larger first hyperpolarizabilities (β₀) (12,112 a.u. and 7921a.u., respectively). This work may inspire further study of the nonlinear properties of BN edge-doped graphene.     

First hyperpolarizability of cyclooctatetraene modulated by alkali and alkaline earth metals

In the present investigation, the first hyperpolarizability of alkali and alkaline earth metal derivatives of cyclooctatetraene (COT) has been calculated using BHHLYP and CAM-B3LYP functional for 6-311++G(d,p), 6-311++G(3df,3pd), and aug-pc 2 basis sets. Introduction of Na/K atoms at the axial position of COT and Li, Na, K/Be, Mg, Ca metal atoms and cyanide groups at the equatorial sites leads to lager enhancement of first hyperpolarizability. The ring charge density can account for the variation of first hyperpolarizability. The two state model has been invoked to explain the variation of first hyperpolarizability.     

Noble gas inserted compounds of borazine and its derivative B<Subscript>3</Subscript>N<Subscript>3</Subscript>R<Subscript>6</Subscript>: structures and bonding

Quantum chemistry computations were performed at the MP2 and B3LYP levels of theory using the basis sets aug-cc-pVDZ and def2-TZVPPD to study the noble gas (Ng) compounds formed by insertion of a Ng atom (Kr, Xe, Rn) into the B–H/F and N–H/F bonds of inorganic benzene B₃N₃H₆ and its fluorine derivative B₃N₃F₆. The geometrical structures were optimized and vibrational analysis was carried out to demonstrate these structures being local minima on the potential energy surface. The thermodynamic properties of the formation process of Ng compounds were calculated. A series of theoretical methods based on the wavefunction analysis, including NBO, AIM and ELF methods and energy decomposition analysis, was used to investigate the bonding nature of the noble gas atoms and the properties of the Ng compounds. The N–Ng bond was found to be stronger than the B–Ng bond, but the B–Ng bond is of typical covalent character and σ-donation from the Ng atom to the ring B atom makes the predominant contribution towards stability of the B-Ng bond. NICS calculation shows that these Ng-containing compounds are of weak π-aromaticity.     

Syntheses and crystal structures of mononuclear [2.2]paracyclophane complexes of rhodium and iridium supported by the pentamethylcyclopentadienyl ligand [M(η-pcp)(η-C5Me5)](BF4)2 (M=Rh and Ir)

Mononuclear [2.2]paracyclophane complexes of Rh and Ir, [M(η⁶-pcp)(η⁵-C₅Me₅)](BF₄)₂ (M=Rh (1) and Ir (2); pcp=[2.2]paracyclophane) were crystallized and their structures were first characterized crystallographically. On both pcp complexes the metal atom is bonded to the benzene ring on one side of the pcp ligand in the η⁶-coordination mode. The metal atom is also supported by the η⁵-C₅Me₅ ligand to afford a triple-decker sandwich structure. In Rh pcp complex 1 the average RhC(pcp) and RhC(C₅Me₅) distances are 2.284(2) and 2.161(2) Å, respectively. The average C(pcp)C(pcp) distance of 1.407(4) Å with the Rh atom is longer than that (1.388(4) Å) without a Rh atom. Similarly, the average IrC(pcp) and IrC(C₅Me₅) distances in Ir pcp complex 2 are 2.275(3) and 2.174(3) Å, respectively. The average C(pcp)C(pcp) distance of 1.410(4) Å with the Ir atom is longer than that (1.388(4) Å) without an Ir atom. It is interesting that the average interannular distances of 2.97 Å for 1 and 2 between two decks of the pcp ligand are shorter than that (3.09 Å) of the metal-free pcp ligand, indicative of the decrease of the repulsive π-interaction between benzene rings. The Rh pcp complex gave the well-resolved ¹H NMR signals of [Rh(η⁶-pcp)(η⁵-C₅Me₅)]²⁺, whereas the Ir pcp complex exhibited two kinds of ¹H NMR signals which were assigned as [Ir(η⁶-pcp)(η⁵-C₅Me₅)]²⁺ and [Ir₂(η⁶-pcp)(η⁵-C₅Me₅)₂]⁴⁺ in (CD₃)₂CO at 23 °C.     

Aromaticity of the completely annelated tetraphenylenes: NICS and GIMIC characterization

A series of heterocyclic and hydrocarbon [8]circulenes (also named completely annelated tetraphenylenes) were studied by the NICS and GIMIC methods in order to describe their aromatic properties from the magnetic criterion point of view. According to calculations all the hetero[8]circulene molecules demonstrate the bifacial aromatic/antiaromatic nature. The inner octatetraene core of the studied [8]circulenes is characterized by the presence of paratropic (“antiaromatic”) ring currents, whereas the outer macrocycle constructed from the five- and six-membered rings possesses the magnetically-induced diatropic (“aromatic”) ring current. The hydrocarbon [8]circulenes studied in this work consist of a similar planar cyclooctatetraene core but they exhibit a rather different balance of magnetically-induced ring currents.

Aromaticity of the completely annelated tetraphenylenes

     

Synthesis of enantiopure planar chiral bis‐(para)‐pseudo‐meta‐type [2.2]paracyclophanes

A new type of planar chiral (R_p)‐ and (S_p)‐4,7,12,15‐tetrasubstituted [2.2]paracyclophanes was prepared from racemic 4,7,12,15‐tetrabromo[2.2]paracyclophane as the starting substrate. Regioselective lithiation and transformations afforded racemic bis‐(para)‐pseudo‐meta‐type [2.2]paracyclophane (4,15‐dibromo‐7,12‐dihydroxy[2.2]paracyclophane). Its optical resolution was performed by the diastereomer method using a chiral camphanoyl group as the chiral auxiliary. The diastereoisomers were readily isolated by simple silica gel column chromatography, and the successive hydrolysis afforded (R_p)‐ and (S_p)‐bis‐(para)‐pseudo‐meta‐type [2.2]paracyclophanes ((R_p)‐ and (S_p)‐4,15‐dibromo‐7,12‐dihydroxy[2.2]paracyclophanes). They can be used as pseudo‐meta‐substituted chiral building blocks.     

Natural polyprenylated benzophenone: keto-enol tautomerism from density functional calculations and the AIM theory

The quantum theory of atoms in molecules (QTAIM) and density functional theory (DFT) calculations were employed to investigate the structure and tautomeric equilibrium of epiclusianone, a polyisoprenylated benzophenone with interesting biological activities. Two different exchange-correlation functionals were employed, namely ωB97x-D and M06-2x, including implicit solvent models (benzene and DMSO). Our results for the thermodynamic properties show that the isomer in which the H atom is bonded to the oxygen away from the benzene ring is the most stable tautomer form of the epiclusianone, thus confirming previous charge density analysis from X-ray diffraction data (Martins et al. J Braz Chem Soc 18(8):1515–1523, 22).     

Nucleus-independent chemical shift criterion for aromaticity in π-extended tetraoxa[8]circulenes

Recently synthesized π-extended symmetrical tetraoxa[8]circulenes that exhibit electroluminescent properties were calculated at the density functional theory (DFT) level using the quantum theory of atoms in molecules (QTAIM) approach to electron density distribution analysis. Nucleus-independent chemical shift (NICS) indices were used to characterize the aromaticity of the studied molecules. The tetraoxa[8]circulene molecules were found to consist of two antiaromatic perimeters (according to the Hückel “4n” antiaromaticity rule) that include 8 and 24 π-electrons. Conversely, NICS calculations demonstrated the existence of a common π-extended system (distributed like a flat ribbon) in the studied tetraoxa[8]circulene molecules. Thus, these symmetrical tetraoxa[8]circulene molecules provide examples of diatropic systems characterized by the presence of induced diatropic ring currents.

Tetrathiafulvalene‐[2.2]paracyclophanes: Synthesis,crystal structures,and chiroptical properties

Two racemic tetrathiafulvalene‐[2.2]paracyclophane electron donors EDT‐TTF‐[2.2]paracyclophane 1 and (COOMe)₂‐TTF‐[2.2]paracyclophane 2 have been synthesized via the phosphite mediated cross coupling strategy. Chiral HPLC allowed the optical resolution of the (R_P) and (S_P) enantiomers for both compounds. Solid‐state structures of (R_P)‐ 1 and (rac)‐ 2 have been determined by single crystal X‐ray analysis. Intermolecular π‐π and S???S interactions are disclosed in the packing. Single crystal X‐ray analysis of (R_P)‐ 1 combined with experimental and theoretical circular dichroism spectra allowed the assignment of the absolute configuration of the enantiomers of 1 and 2 .     

Aromatic character of heptafulvene and its complexes with halogen atoms

Geometry optimization of heptafulvene-halogen complexes (halogens: F, Cl, Br, I, and At) carried out at the B3LYP/6-311+G(d,p) level of theory allowed us to estimate the geometry-based aromaticity index HOMA, the magnetism-based indices NICS, NICS(1), and NICS(1)(ZZ), as well as the energy of complex formation. Application of the NBO method allowed us to estimate the pEDA characteristics of the π-electron distribution in complexes (i.e., the electron excess/deficiency of the π-electron system in the ring). All of the characteristics of the complexes were found to be mutually interrelated, exhibiting good or at least acceptable correlation coefficients. It was also noted that halogen atoms with greater radii yielded weaker complexes and lower aromaticities, as shown by the HOMA, NICS, and pEDA indices. The energy of complex formation was observed to be linearly correlated with the degree of aromatization of the heptafulvene ring, as expressed by these indices.     

(Super)alkali atoms interacting with the σ electron cloud: a novel interaction mode triggers large nonlinear optical response of M@P4 and M@C3H6 (M=Li, Na, K and Li3O)

Under high-level ab initio calculations, the geometrical structures and nonlinear optical properties of M@P₄ (M=Li, Na, K and Li₃O) and M@C₃H₆ (M=Li and Li₃O) were investigated; all were found to exhibit considerable first hyperpolarizabilities (18110, 1440, 22490, 50487, 2757 and 31776 au, respectively). The computational results revealed that when doping the (super)alkali atom M into the tetrahedral P₄ molecule, the original dual spherical aromaticity of the P₄ moiety is broken and new σ electron cloud is formed on the face of P₄ part interacting with the M atom. It was found that interaction of the (super)alkali atom with the σ electron cloud is a novel mode to produce diffuse excess electrons effectively to achieve a considerable β ₀ value. Further, beyond the alkali atom, employing the superalkali unit can be a more effective approach to significantly enhance the first hyperpolarizability of the systems, due to the much lower vertical ionization potential. These results were further supported by the case of the (super)alkali atom interacting with the cyclopropane C₃H₆ molecule with its typical σ aromatic electron cloud. Moreover, the β ₀ values of the M@P₄ series are nonmonotonic dependent on alkali atomic number, namely, 1440 au (M?=?Na)?<?18110 au (Li)?<?22490 au (K), inferring that the distance between the alkali atom and the interacting surface with the σ electron cloud in P₄ is a crucial geometrical factor in determining their first hyperpolarizabilities. These intriguing findings will be advantageous for promoting the design of novel high-performance nonlinear optical materials.

Synthesis and structure determination of [8(-13)C]guanosine 5'-diphosphate

A combined chemical and enzymatic synthesis of [8(-13)C]guanosine 5'-diphosphate (GDP) from H13COOH is described. About 35 mg nucleotide was obtained from 500 mg H13COOH. Analysis of the [8(-13)C]GDP by negative ion fast atom bombardment mass spectrometry and by 13C NMR confirmed that one atom of 13C was incorporated at the 8-position of the guanine ring at 90 +/- 10% enrichment. The chemical shift of the C(8) was 140.2 ppm downfield from internal trimethylsilylpropionate at neutral pH and room temperature, with a spin-spin coupling 1J(13C(8)-H(8] of 217 Hz and a 3J(13C(8)-H(1'] of 3.9 Hz.     

Photochemical synthesis of benzoyl spiro[2.2]pentanes.

In the present study, we describe the photochemical behaviour of 2-mesyloxy phenyl ketones 8 and 12 bearing a cyclopropane moiety in the side-chain. Irradiation of 8 and 12 leads to the corresponding benzoyl spiro[2.2]pentanes as a consequence of an initial gamma-H-shift, subsequent elimination of MsOH (accompanied by a spin-center shift) and cyclization of the resulting 1,3-diradicals. In contrast, a corresponding phenyl ketone without a mesyloxy group in the 2-position, and thus a potential reactant of the "classical" Norrish-Yang reaction, shows no photochemical reaction. By means of quantum chemical calculations we discovered that in the presence of a mesyloxy group the activation barrier for the photochemical gamma-H-shift is substantially decreased. Furthermore, a photoinduced skeletal rearrangement of benzoyl spiro[2.2]pentane to 2-cyclobutylidene-acetophenone could be observed. Compared to the common methods used to synthesize spiro[2.2]pentanes, the photochemical preparation of benzoyl spiro[2.2]pentane presented herein is the first example where a bond between the spiro atom and an adjacent atom is formed.     

Significant Effect of Fluorination on Simultaneously Improving Work Function and Transparency of Anode Interlayer for Organic Solar Cells

Since the highest occupied molecular orbital (HOMO) level of donors in organic solar cells (OSCs) is being constantly downshifted for achieving high open‐circuit voltage (V_oc), a further enhancement of the anode work function (WF) is required. Herein, an effective approach of fluorination is demonstrated to simultaneously improve the WF and transparency for anode interlayer (AIL) material. By fluorination, in combination with the dialysis treatment in LiCl solution, the WF of PCP‐2F‐Li could be significantly enhanced from 4.86 to 5.0 eV, as compared to PCP‐Na. Meanwhile, the transparency of the polymer is also improved. As a result, PCP‐2F‐Li can be used to modify efficient active layers consisting of polymer donors with deep HOMO levels, such as PBDB‐T‐2F:IT‐4F, and an outstanding power conversion efficiency (PCE) of 12.7% is achieved in the corresponding device with a high V_oc of 0.84 V. This result represents the highest efficiency for the OSCs using a solution‐processed pH‐neutral AIL, which is beneficial to the low‐cost fabrication of high‐performance OSCs with improved stability. More importantly, PCP‐2F‐Li could be processed by blade coating for making large‐area device of 1 cm², and a PCE of 10.6% is achieved, bringing a promising prospect for the large‐area device fabrication.     

Hydroxylation of p-substituted phenols by tyrosinase: further insight into the mechanism of tyrosinase activity

A study of the monophenolase activity of tyrosinase by measuring the steady state rate with a group of p-substituted monophenols provides the following kinetic information: k(cat)(m) and the Michaelis constant, K(M)(m). Analysis of these data taking into account chemical shifts of the carbon atom supporting the hydroxyl group (δ) and σ(p)(+), enables a mechanism to be proposed for the transformation of monophenols into o-diphenols, in which the first step is a nucleophilic attack on the copper atom on the form E(ox) (attack of the oxygen of the hydroxyl group of C-1 on the copper atom) followed by an electrophilic attack (attack of the hydroperoxide group on the ortho position with respect to the hydroxyl group of the benzene ring, electrophilic aromatic substitution with a reaction constant ρ of -1.75). These steps show the same dependency on the electronic effect of the substituent groups in C-4. Furthermore, a study of a solvent deuterium isotope effect on the oxidation of monophenols by tyrosinase points to an appreciable isotopic effect. In a proton inventory study with a series of p-substituted phenols, the representation of [Formula: see text] / [Formula: see text] against n (atom fractions of deuterium), where [Formula: see text] is the catalytic constant for a molar fraction of deuterium (n) and [Formula: see text] is the corresponding kinetic parameter in a water solution, was linear for all substrates. These results indicate that only one of the proton transfer processes from the hydroxyl groups involved the catalytic cycle is responsible for the isotope effects. We suggest that this step is the proton transfer from the hydroxyl group of C-1 to the peroxide of the oxytyrosinase form (E(ox)). After the nucleophilic attack, the incorporation of the oxygen in the benzene ring occurs by means of an electrophilic aromatic substitution mechanism in which there is no isotopic effect.     

Solid-phase synthesis of chiral stationary phases based on 2,4,5,6-tetrachloro-1,3-dicyanobenzene derivatives spaced from N-3,5-dinitrobenzoyl alpha-amino acids: comparative study of their resolution efficacy

Two new chiral stationary phases, 3-[5-chloro-1,3-dicyano-2,4-[2'-(N'-1,3-dinitrobenzoyl-D-phenylglycinyl) aminoethyl]aminophen-1-yl] aminopropyl silica (CSP-1) and 3-[5-chloro-1,3-dicyano-2,4-[2'-(N'-1,3-dinitrobenzoyl-L-leucinyl) aminoethyl] aminophen-1-yl] aminopropyl silica (CSP-2), were prepared by solid-phase synthesis. They comprise chiral unit, 3,5-dinitrobenzoyl derivative of the amino acid, D-PhGly or L-Leu, bound via spacer 1,2-diaminoethane to 2,4-positions of the persubstituted benzene ring, derived from compound 1, and possess pseudo-C2 symmetry. Preparation of model compounds 6 and 7 confirmed the structure of chiral selectors, which comprise pi-donor persubsituted aromatic ring and two strong pi-acceptor 3,5-dinitrobenzoyl amido units. CD spectra of model selectors 6 and 7, run in DMSO above 250 nm, exhibit negative exciton coupling (EC) between pi-acceptor and pi-donor chromophores, C(1) symmetric model compound 8 exhibited much weaker EC and 9, devoid of pi-donor unit, does not exhibit any significant CD. Combined pi-donor and pi-acceptor properties enable the new CSPs to separate a broad range of racemates. The columns with CSP-1 and CSP-2 were tested for the separation of 22 racemates by HPLC with two different mobile phase systems and the results are compared with those obtained by using a structurally related commercial column.     

A study of the aromaticity of heteroannelated cyclooctatetraene derivatives

The aromaticity of the rings of thiophene, pyrrole, furan, and benzene annelated cyclooctatetraene (COT) derivatives and of their double charged ions was studied using the graph-theoretical theory of aromaticity. On the basis of topological resonance energy, it was found that the global aromaticity is dependent upon on the arrangement of heteroatoms in the given molecule. Relative stability of these molecules when in different charged states can been explained in terms of the topological charge stabilization rule. We expect that fusing the COT ring with an increasing number of aromatic rings will lead to an increase in the aromaticity of the molecule. According to the bond resonance energy (BRE) and circuit resonance energy (CRE) indices, local antiaromaticity of the COT ring is weakened as the number of fused rings increases, and these changes play a significant role in the global aromaticity of the molecule. For some compounds, our BRE and CRE indices do not predict the same order of magnitude of the local aromatic character of certain rings that the nucleus independent chemical shift (NICS(0) and (NICS(1)) methods predict. Finally, for the available compounds, correlations between the diatropic and paratropic chemical shifts of the protons and our ring current results were analyzed and good agreement was found.     

8-Phosphorus substituted isosteres of purine and deazapurines.

Synthesis of 8-phosphorus substituted isosteres of purine [pyrimidino (4,5-d)-1,3,2-diazaphosphole], 1-deazapurine [pyridino (2,3-d)-1,3,2-diazaphosphole] and 3-deazapurine [pyridino (4,5-d)-1,3,2-diazaphosphole] has been achieved by the reaction of equimolar amounts of triphenylphosphite and 4,5-diaminopyrimidine, 2,3-diaminopyridine and 3,4-diaminopyridine, respectively. These compounds hydrolyzed (cleavage of the phosphorus-nitrogen bounds) in aqueous solutions to provide the corresponding diaminopyrimidine or diaminopyridines. These three new basic ring systems constitute the first reported synthesis of purines in which ring carbon atom is substituted with a phosphorus atom. 8-Phosphorus substituted purine at a concentration of 4 X 10(-4)M caused a 50% inhibition in the growth of leukemia L1210 cells in culture. The biochemical rationale for the synthesis of these compounds is discussed.