共查询到20条相似文献,搜索用时 546 毫秒
1.
Background
The most fundamental task using gene expression data in clinical oncology is to classify tissue samples according to their gene expression levels. Compared with traditional pattern classifications, gene expression-based data classification is typically characterized by high dimensionality and small sample size, which make the task quite challenging. 相似文献2.
Russell L Legg Jessica R Tolman Cameron T Lovinger Edwin D Lephart Kenneth DR Setchell Merrill J Christensen 《Reproductive biology and endocrinology : RB&E》2008,6(1):57
Background
High dietary intake of selenium or soybean isoflavones reduces prostate cancer risk. These components each affect androgen-regulated gene expression. The objective of this work was to determine the combined effects of selenium and isoflavones on androgen-regulated gene expression in rat prostate. 相似文献3.
4.
Background
The paper of Liu, Gaido and Wolfinger on gene expression during the division cycle of HeLa cells using the data of Whitfield et al. are discussed in order to see whether their analysis is related to gene expression during the division cycle. 相似文献5.
Background
Survival time is an important clinical trait for many disease studies. Previous works have shown certain relationship between patients' gene expression profiles and survival time. However, due to the censoring effects of survival time and the high dimensionality of gene expression data, effective and unbiased selection of a gene expression signature to predict survival probabilities requires further study. 相似文献6.
Panayiotis Tsaparas Leonardo Mari?o-Ramírez Olivier Bodenreider Eugene V Koonin I King Jordan 《BMC evolutionary biology》2006,6(1):70
Background
A genome-wide comparative analysis of human and mouse gene expression patterns was performed in order to evaluate the evolutionary divergence of mammalian gene expression. Tissue-specific expression profiles were analyzed for 9,105 human-mouse orthologous gene pairs across 28 tissues. Expression profiles were resolved into species-specific coexpression networks, and the topological properties of the networks were compared between species. 相似文献7.
Harri T Kiiveri 《BMC bioinformatics》2011,12(1):42
Background
Typical analysis of microarray data ignores the correlation between gene expression values. In this paper we present a model for microarray data which specifically allows for correlation between genes. As a result we combine gene network ideas with linear models and differential expression. 相似文献8.
Dagmar M Kube Cemile D Savci-Heijink Anne-Françoise Lamblin Farhad Kosari George Vasmatzis John C Cheville Donald P Connelly George G Klee 《BMC molecular biology》2007,8(1):25
Background
To discover prostate cancer biomarkers, we profiled gene expression in benign and malignant cells laser capture microdissected (LCM) from prostate tissues and metastatic prostatic adenocarcinomas. Here we present methods developed, optimized, and validated to obtain high quality gene expression data. 相似文献9.
Background
The objectives of this study were to develop an easy and rapid method for measuring gene expression in a small number of cells by real-time PCR without RNA extraction and purification, and to use this method to determine more precisely IGF-I gene expression in the cumulus cells surrounding oocytes. 相似文献11.
Background
Microarrays are widely used for the study of gene expression; however deciding on whether observed differences in expression are significant remains a challenge. 相似文献12.
Teschendorff AE Naderi A Barbosa-Morais NL Pinder SE Ellis IO Aparicio S Brenton JD Caldas C 《Genome biology》2006,7(10):R101-13
Background
A consensus prognostic gene expression classifier is still elusive in heterogeneous diseases such as breast cancer. 相似文献13.
Lopez F Rougemont J Loriod B Bourgeois A Loï L Bertucci F Hingamp P Houlgatte R Granjeaud S 《BMC genomics》2004,5(1):38-14
Background
High-density DNA microarrays require automatic feature extraction methodologies and softwares. These can be a potential source of non-reproducibility of gene expression measurements. Variation in feature location or in signal integration methodology may be a significant contribution to the observed variance in gene expression levels. 相似文献14.
Stéphanie Jaubert-Possamai Gaël Le Trionnaire Joël Bonhomme Georges K Christophides Claude Rispe Denis Tagu 《BMC biotechnology》2007,7(1):63
Background
RNA interference (RNAi) is a powerful method to inhibit gene expression in a sequence specific manner. 相似文献15.
Background
Genome wide microarray studies have the potential to unveil novel disease entities. Clinically homogeneous groups of patients can have diverse gene expression profiles. The definition of novel subclasses based on gene expression is a difficult problem not addressed systematically by currently available software tools. 相似文献16.
Ting Gong Jianhua Xuan Li Chen Rebecca B Riggins Huai Li Eric P Hoffman Robert Clarke Yue Wang 《BMC bioinformatics》2011,12(1):82
Background
Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for example, gene clustering is a popular method for grouping genes with similar gene expression patterns. However, traditional gene clustering often yields unsatisfactory results for regulatory module identification because the resulting gene clusters are co-expressed but not necessarily co-regulated. 相似文献17.
The monosaccharide transporter gene family in land plants is ancient and shows differential subfamily expression and expansion across lineages 总被引:1,自引:0,他引:1
Background
In plants, tandem, segmental and whole-genome duplications are prevalent, resulting in large numbers of duplicate loci. Recent studies suggest that duplicate genes diverge predominantly through the partitioning of expression and that breadth of gene expression is related to the rate of gene duplication and protein sequence evolution. 相似文献18.
Pei-Chang Sun Ching Tzao Ban-Hen Chen Chen-Wei Liu Cheng-Ping Yu Jong-Shiaw Jin 《Journal of biomedical science》2010,17(1):76
Background
Histone deacetylases and histone acetyl transferases covalently modify histone proteins, consequentially altering chromatin architecture and gene expression. 相似文献19.
20.
Yanping Han Jingfu Qiu Zhaobiao Guo He Gao Yajun Song Dongsheng Zhou Ruifu Yang 《BMC microbiology》2007,7(1):96